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Conserved domains on  [gi|504372937|ref|WP_014560039|]
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DUF3078 domain-containing protein [Ignavibacterium album]

Protein Classification

DUF3078 domain-containing protein( domain architecture ID 10568065)

DUF3078 domain-containing protein may be a beta-barrel membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3078 pfam11276
Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.
 40-129 3.33e-22

Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.


:

Pssm-ID: 431776  Cd Length: 90  Bit Score: 87.97  E-value: 3.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504372937   40 SQIAFKDWTQGGSNALAYTLFSNFGVIYFDNPWKWRTNLKAAYGRTKLEDQGYRTTDNEFYFESILTRKIGWPVDPYFAL 119
Cdd:pfam11276   1 SQVSFSNWYAGGENSLALLANLNYFANYKKEKFSWDNKLELKYGLNKQKDQKYRKTDDRIRLNSKLGYKASKKWYYSASL 80

                          90
                  ....*....|
gi 504372937  120 TIRSSLTKGY 129
Cdd:pfam11276  81 NFRTQFANGY 90
 
Name Accession Description Interval E-value
DUF3078 pfam11276
Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.
 40-129 3.33e-22

Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.


Pssm-ID: 431776  Cd Length: 90  Bit Score: 87.97  E-value: 3.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504372937   40 SQIAFKDWTQGGSNALAYTLFSNFGVIYFDNPWKWRTNLKAAYGRTKLEDQGYRTTDNEFYFESILTRKIGWPVDPYFAL 119
Cdd:pfam11276   1 SQVSFSNWYAGGENSLALLANLNYFANYKKEKFSWDNKLELKYGLNKQKDQKYRKTDDRIRLNSKLGYKASKKWYYSASL 80

                          90
                  ....*....|
gi 504372937  120 TIRSSLTKGY 129
Cdd:pfam11276  81 NFRTQFANGY 90
 
Name Accession Description Interval E-value
DUF3078 pfam11276
Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.
 40-129 3.33e-22

Protein of unknown function (DUF3078); This bacterial family of proteins has no known function.


Pssm-ID: 431776  Cd Length: 90  Bit Score: 87.97  E-value: 3.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504372937   40 SQIAFKDWTQGGSNALAYTLFSNFGVIYFDNPWKWRTNLKAAYGRTKLEDQGYRTTDNEFYFESILTRKIGWPVDPYFAL 119
Cdd:pfam11276   1 SQVSFSNWYAGGENSLALLANLNYFANYKKEKFSWDNKLELKYGLNKQKDQKYRKTDDRIRLNSKLGYKASKKWYYSASL 80

                          90
                  ....*....|
gi 504372937  120 TIRSSLTKGY 129
Cdd:pfam11276  81 NFRTQFANGY 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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