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Conserved domains on  [gi|504427311|ref|WP_014614413|]
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sporulation phosphorelay system protein KapB [Staphylococcus pseudintermedius]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KapB super family cl07425
Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an ...
 7-117 3.79e-51

Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.


The actual alignment was detected with superfamily member pfam08810:

Pssm-ID: 430229  Cd Length: 111  Bit Score: 157.42  E-value: 3.79e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504427311    7 HKTGVYAVEVVEENGDQVLVKVLQVIKHPKQGDLHNPNEVEGVFFHERKALSLYEKRFTSPSRLKPFEGDIEEYTVTLQR 86
Cdd:pfam08810   1 YKTGKYIGEVTEVRPQHYLVKVLAVLKHPTQGDLHNPKQADVPFFHERKALSYREKTNVPKQMVKPYEGEVPDYEESLKQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 504427311   87 AITTLEHQLQEMDTPFAHASLNCLAQLKEDY 117
Cdd:pfam08810  81 ALEKLKEKLQEDDSEWAERSLELLEELEKEY 111
 
Name Accession Description Interval E-value
KapB pfam08810
Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an ...
 7-117 3.79e-51

Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.


Pssm-ID: 430229  Cd Length: 111  Bit Score: 157.42  E-value: 3.79e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504427311    7 HKTGVYAVEVVEENGDQVLVKVLQVIKHPKQGDLHNPNEVEGVFFHERKALSLYEKRFTSPSRLKPFEGDIEEYTVTLQR 86
Cdd:pfam08810   1 YKTGKYIGEVTEVRPQHYLVKVLAVLKHPTQGDLHNPKQADVPFFHERKALSYREKTNVPKQMVKPYEGEVPDYEESLKQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 504427311   87 AITTLEHQLQEMDTPFAHASLNCLAQLKEDY 117
Cdd:pfam08810  81 ALEKLKEKLQEDDSEWAERSLELLEELEKEY 111
 
Name Accession Description Interval E-value
KapB pfam08810
Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an ...
 7-117 3.79e-51

Kinase associated protein B; This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.


Pssm-ID: 430229  Cd Length: 111  Bit Score: 157.42  E-value: 3.79e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504427311    7 HKTGVYAVEVVEENGDQVLVKVLQVIKHPKQGDLHNPNEVEGVFFHERKALSLYEKRFTSPSRLKPFEGDIEEYTVTLQR 86
Cdd:pfam08810   1 YKTGKYIGEVTEVRPQHYLVKVLAVLKHPTQGDLHNPKQADVPFFHERKALSYREKTNVPKQMVKPYEGEVPDYEESLKQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 504427311   87 AITTLEHQLQEMDTPFAHASLNCLAQLKEDY 117
Cdd:pfam08810  81 ALEKLKEKLQEDDSEWAERSLELLEELEKEY 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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