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Conserved domains on  [gi|504462936|ref|WP_014650038|]
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cytochrome c biogenesis protein CcdC [Paenibacillus mucilaginosus]

Protein Classification

cytochrome c biogenesis protein CcdC( domain architecture ID 10538133)

membrane protein CcdC is involved in cytochrome c biogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1453 pfam07301
CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc ...
 50-148 4.14e-31

CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc is not known.


:

Pssm-ID: 429394  Cd Length: 144  Bit Score: 109.20  E-value: 4.14e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504462936   50 WNPQLHLTLKEVVLSLLFGLLMSVPMILTTNYERReDGRIYPVKSKAFIVVILALIALRLGLRSYLSA-LDPAELAMLFY 128
Cdd:pfam07301  46 VFPPFRLTWLEVLEALLVGALFSIPLIKTSKFEIR-DGLIYLKRSKAFIFILIGLLVIRLVLKSYLSSsIDPGQLSGLFF 124

                          90       100
                  ....*....|....*....|
gi 504462936  129 LIAAAYIVPWRIAGFVKFRR 148
Cdd:pfam07301 125 LLAFGMIVPWRIAMYLKYRR 144
 
Name Accession Description Interval E-value
DUF1453 pfam07301
CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc ...
 50-148 4.14e-31

CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc is not known.


Pssm-ID: 429394  Cd Length: 144  Bit Score: 109.20  E-value: 4.14e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504462936   50 WNPQLHLTLKEVVLSLLFGLLMSVPMILTTNYERReDGRIYPVKSKAFIVVILALIALRLGLRSYLSA-LDPAELAMLFY 128
Cdd:pfam07301  46 VFPPFRLTWLEVLEALLVGALFSIPLIKTSKFEIR-DGLIYLKRSKAFIFILIGLLVIRLVLKSYLSSsIDPGQLSGLFF 124

                          90       100
                  ....*....|....*....|
gi 504462936  129 LIAAAYIVPWRIAGFVKFRR 148
Cdd:pfam07301 125 LLAFGMIVPWRIAMYLKYRR 144
CcdC COG4846
Cytochrome c biogenesis protein CcdC [Energy production and conversion, Posttranslational ...
 51-150 3.54e-26

Cytochrome c biogenesis protein CcdC [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443874  Cd Length: 157  Bit Score: 96.87  E-value: 3.54e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504462936  51 NPQLHLTLKEVVLSLLFGLLMSVPMILTTNYERREDGrIYPVKSKAFIVVILALIALRLGLRSYLS-ALDPAELAMLFYL 129
Cdd:COG4846   50 FPEFRVPWLEALEAFLVGLLFSIPLIKTSKFEVRGDD-IYLKRSKAFIFILIGLLVIRIVLKLYLSgTIDPGELGGMFFL 128

                         90       100
                 ....*....|....*....|.
gi 504462936 130 IAAAYIVPWRIAGFVKFRRIQ 150
Cdd:COG4846  129 LAFGMIVPWRIAMYIKYRKLE 149
 
Name Accession Description Interval E-value
DUF1453 pfam07301
CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc ...
 50-148 4.14e-31

CcdC protein; This family includes protein CcdC from Bacillus subtilis. The function of Ccdc is not known.


Pssm-ID: 429394  Cd Length: 144  Bit Score: 109.20  E-value: 4.14e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504462936   50 WNPQLHLTLKEVVLSLLFGLLMSVPMILTTNYERReDGRIYPVKSKAFIVVILALIALRLGLRSYLSA-LDPAELAMLFY 128
Cdd:pfam07301  46 VFPPFRLTWLEVLEALLVGALFSIPLIKTSKFEIR-DGLIYLKRSKAFIFILIGLLVIRLVLKSYLSSsIDPGQLSGLFF 124

                          90       100
                  ....*....|....*....|
gi 504462936  129 LIAAAYIVPWRIAGFVKFRR 148
Cdd:pfam07301 125 LLAFGMIVPWRIAMYLKYRR 144
CcdC COG4846
Cytochrome c biogenesis protein CcdC [Energy production and conversion, Posttranslational ...
 51-150 3.54e-26

Cytochrome c biogenesis protein CcdC [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443874  Cd Length: 157  Bit Score: 96.87  E-value: 3.54e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504462936  51 NPQLHLTLKEVVLSLLFGLLMSVPMILTTNYERREDGrIYPVKSKAFIVVILALIALRLGLRSYLS-ALDPAELAMLFYL 129
Cdd:COG4846   50 FPEFRVPWLEALEAFLVGLLFSIPLIKTSKFEVRGDD-IYLKRSKAFIFILIGLLVIRIVLKLYLSgTIDPGELGGMFFL 128

                         90       100
                 ....*....|....*....|.
gi 504462936 130 IAAAYIVPWRIAGFVKFRRIQ 150
Cdd:COG4846  129 LAFGMIVPWRIAMYIKYRKLE 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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