|
Name |
Accession |
Description |
Interval |
E-value |
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
10-259 |
1.68e-88 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 263.51 E-value: 1.68e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 10 RLWNTFFNFYGAAMLLFLIVPVLVIVPLSFNAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGV 89
Cdd:COG1177 3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 90 LASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLT 169
Cdd:COG1177 83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 170 RAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVG 249
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLIL 242
|
250
....*....|
gi 504513074 250 AALVLLIVME 259
Cdd:COG1177 243 LSLLLLLLAE 252
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
17-257 |
1.82e-47 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 158.61 E-value: 1.82e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 17 NFYGAAMLLFLIVPVLVIVPLSFNAGSFlSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLV 96
Cdd:PRK09500 7 GGFMTLVYAYLYIPIIILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 97 RGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLG 176
Cdd:PRK09500 86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 177 ASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVGAALVLLI 256
Cdd:PRK09500 166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245
|
.
gi 504513074 257 V 257
Cdd:PRK09500 246 L 246
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
70-255 |
1.40e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.61 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 70 LGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLG 149
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 150 V----PFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLP 225
Cdd:cd06261 81 LlliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 504513074 226 LQMFAGIRENLDPTIAAAATMMVGAALVLL 255
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
21-207 |
3.76e-12 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 65.86 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 21 AAMLLFLIVPVLVIVPLSF--NAGSFLSypLTGFSlrwyrEFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRG 98
Cdd:TIGR03262 12 LALLLFLLLPLLALLTKSVydSDGDFIG--LANFA-----EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 99 EFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL---------GLVLAHAMLGVPFVVITVTAVLKNYDHNLT 169
Cdd:TIGR03262 85 RIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLggfsiygfwGIVIGEVFYTFPHALMILVTALSLADGRLY 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 504513074 170 RAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSF 207
Cdd:TIGR03262 165 EAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
84-260 |
2.17e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.91 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 84 ATVLGVLASVGLVRgefRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKN 163
Cdd:pfam00528 1 GIPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 164 YDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPrqRTLPLQMFAGIRENLDPTIAAA 243
Cdd:pfam00528 78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGP 155
|
170
....*....|....*..
gi 504513074 244 ATMMVGAALVLLIVMEI 260
Cdd:pfam00528 156 VLAAALILLLLNLLVDI 172
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
73-180 |
5.46e-05 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 42.92 E-value: 5.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 73 SLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAK------LSLLNSYLGLVLAHA 146
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80
|
90 100 110
....*....|....*....|....*....|....
gi 504513074 147 MLGVPFVVITVTAVLKNYDHNLTRAAASLGASPL 180
Cdd:NF038017 81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRW 114
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
10-259 |
1.68e-88 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 263.51 E-value: 1.68e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 10 RLWNTFFNFYGAAMLLFLIVPVLVIVPLSFNAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGV 89
Cdd:COG1177 3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 90 LASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLT 169
Cdd:COG1177 83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 170 RAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVG 249
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLIL 242
|
250
....*....|
gi 504513074 250 AALVLLIVME 259
Cdd:COG1177 243 LSLLLLLLAE 252
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
17-257 |
1.82e-47 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 158.61 E-value: 1.82e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 17 NFYGAAMLLFLIVPVLVIVPLSFNAGSFlSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLV 96
Cdd:PRK09500 7 GGFMTLVYAYLYIPIIILIVNSFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 97 RGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLG 176
Cdd:PRK09500 86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 177 ASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVGAALVLLI 256
Cdd:PRK09500 166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245
|
.
gi 504513074 257 V 257
Cdd:PRK09500 246 L 246
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
18-259 |
6.89e-37 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 136.83 E-value: 6.89e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 18 FYGAAMLLFLIVPVLVIVplsfnAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVR 97
Cdd:COG1178 293 LCLLLVLLGLLLPLLALL-----LWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRR 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 98 GEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAK---LSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAAS 174
Cdd:COG1178 368 RRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARS 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 175 LGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVGAALVL 254
Cdd:COG1178 448 LGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLP 527
|
....*
gi 504513074 255 LIVME 259
Cdd:COG1178 528 VLLLE 532
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
19-258 |
2.30e-35 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 127.96 E-value: 2.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 19 YGAAMLLFLIVPVLVIVPLSFNAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRG 98
Cdd:COG1176 18 ALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 99 EFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAK-----------------LSLLNSYLGLVLAHAMLGVPFVVITVTAVL 161
Cdd:COG1176 98 PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRngllnslllalglidepLRLLYTEFAVVIGLVYVYLPFMVLPLYAAL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 162 KNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIA 241
Cdd:COG1176 178 EKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLA 257
|
250
....*....|....*...
gi 504513074 242 AA-ATMMVGAALVLLIVM 258
Cdd:COG1176 258 AAlAVVLLLIVLLVLLLY 275
|
|
| PRK10592 |
PRK10592 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
26-250 |
4.41e-34 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182574 Cd Length: 281 Bit Score: 124.58 E-value: 4.41e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 26 FLIVPVLVIVPLSFNAgSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVR-GEFRGKS 104
Cdd:PRK10592 22 FLYAPMLMLVIYSFNS-SKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 105 LVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSY------LGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGAS 178
Cdd:PRK10592 101 GFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWpadrgmLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGAT 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504513074 179 PLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAATMMVGA 250
Cdd:PRK10592 181 PLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGV 252
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
10-258 |
5.66e-32 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 119.04 E-value: 5.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 10 RLWNTFFNFYGAAMLLFLIVPVLVIVPLSFN-AGSFLSYPL----TGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLA 84
Cdd:COG0395 11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKpPAEIFSGPPsllpSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 85 TVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNY 164
Cdd:COG0395 91 LLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSI 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 165 DHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTL-FLASPRQRTLP--LQMFAGIRENLDPTIA 241
Cdd:COG0395 171 PRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPvgLASFQGQYGTDWGLLM 250
|
250
....*....|....*..
gi 504513074 242 AAATMMVGAALVLLIVM 258
Cdd:COG0395 251 AAAVIATLPVLILFLFL 267
|
|
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
63-260 |
4.37e-28 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 107.06 E-value: 4.37e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 63 SSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL--- 139
Cdd:COG4149 2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLeel 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 140 ----------GLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDE 209
Cdd:COG4149 82 fgislvftwtGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 504513074 210 VIVTLFLAS---PRQRTLPLQMFAGIrENLDPTIAAA-ATMMVGAALVLLIVMEI 260
Cdd:COG4149 162 FGATLMFAGnipGKTQTLPLAIYDAV-EAGDYAAAHAlSLILLAISFVVLLLLNL 215
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
1-260 |
8.18e-27 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 104.83 E-value: 8.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 1 MRQQGEVGIRLWNTFFNFYgaaMLLFLIVPVLVIVPLSFNAGsflsypLTGFslrwyREFFNSSEWLGALGNSLLIAPLA 80
Cdd:COG0555 1 MSRRVLPGFGLTLGLTLLY---LSLIVLLPLAALVLKAAGLG------WAEF-----WAVLTSPRVLAALKLSLGTALIA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 81 TLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL------------GLVLAHAML 148
Cdd:COG0555 67 ALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLaplgikvaftplGIVLAQTFV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 149 GVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLAS---PRQRTLP 225
Cdd:COG0555 147 SLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGnlpMKTEILP 226
|
250 260 270
....*....|....*....|....*....|....*.
gi 504513074 226 LQMFAGIrENLDPTIAAA-ATMMVGAALVLLIVMEI 260
Cdd:COG0555 227 LLIYLKL-EEGDYAGATAiALVLLLISFLLLLLINL 261
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
21-258 |
5.15e-25 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 103.70 E-value: 5.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 21 AAMLLFLIVPVLVIVPLSFNAGsflsypltgfsLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEF 100
Cdd:COG1178 18 LLLALLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 101 RGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL---------------GLVLAHAMLGVPFVVITVTAVLKNYD 165
Cdd:COG1178 87 PGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLralfgleppdiyglgGIILVLVLFNYPYVYLLLRAALRSID 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 166 HNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLAsPRQRTLPLQMFAGIRENLDPTIAAA-A 244
Cdd:COG1178 167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG-GGYTTLTTAIYQAWLGDFDLGAAAAlA 245
|
250
....*....|....
gi 504513074 245 TMMVGAALVLLIVM 258
Cdd:COG1178 246 LVLLLLVLLLLLLE 259
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
20-247 |
1.25e-23 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 96.76 E-value: 1.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 20 GAAMLLFLIVPVLVIVPLSFNAGSFL--SYPL-TGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLV 96
Cdd:COG3833 22 LIILAIIALFPILWVVSASFNPGGSLysSSLIpENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 97 RGEFRG-KSLVMAVLISPMIaPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASL 175
Cdd:COG3833 102 RFRFKGrKAGLLALLLLQMF-PAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKID 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504513074 176 GASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIV-TLFLASPRQRTLPL---QMFAGIRENLDPTIAAAATMM 247
Cdd:COG3833 181 GASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILaSVLLRSPENYTLAVglySFVSDQRNTNWGVFAAGAVLV 256
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
63-232 |
4.36e-19 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 83.43 E-value: 4.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 63 SSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL--- 139
Cdd:PRK09421 4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLyew 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 140 ----------GLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDE 209
Cdd:PRK09421 84 fgisfafswrGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE 163
|
170 180
....*....|....*....|....*.
gi 504513074 210 VIVTLFLAS--PRQ-RTLPLQMFAGI 232
Cdd:PRK09421 164 FGATITFVSniPGEtQTIPSAMYTLI 189
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
21-257 |
9.32e-18 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 80.95 E-value: 9.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 21 AAMLLFLIVPVLVIVPLSFNAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVgLVRGEF 100
Cdd:COG1175 29 LLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL-LLNRKL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 101 RGKSLVMAVLISPMIAPVVIVAVGMFFFFAK-LSLLNSYLG-------------------LVLAHAMLGVPFVVITVTAV 160
Cdd:COG1175 108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPdYGLLNALLGalglepinwlgdpslalpaVIIVTVWKGTGFNMLIFLAG 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 161 LKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFD--EVIVTLFLASPRQ--RTLPLQMFAGIRENL 236
Cdd:COG1175 188 LQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQvfDLVYVLTGGGPGNstTTLVLYIYQTAFQQF 267
|
250 260
....*....|....*....|.
gi 504513074 237 DPTIAAAATMMVGAALVLLIV 257
Cdd:COG1175 268 DFGYASAIAVVLFLIILVLTL 288
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
9-209 |
6.41e-17 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 77.75 E-value: 6.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 9 IRLWNTFFNFYGAAMLLFLIVPVLVIVPLSFNAGSFLSYPLTGFSLrwyreffnSSEWLGALGNSLLIAPLATLLATVLG 88
Cdd:CHL00187 4 FNFSLKFSSIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKAT--------EPIALSAYSLTLSMALIAALINGFFG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 89 VLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAV------------GMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVIT 156
Cdd:CHL00187 76 LLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLtlatvygdngwiGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRT 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 504513074 157 VTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDE 209
Cdd:CHL00187 156 IQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
21-254 |
9.81e-16 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 75.43 E-value: 9.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 21 AAMLLFLIVPVLVIVPLSFnagsflsYPLT-----------GFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGV 89
Cdd:PRK15050 22 LRPLLWLLLPLLVLAPLVV-------YPLVrvvlqsltgehGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 90 LASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAK------------------LSLLNSYLGLVLAHAMLGVP 151
Cdd:PRK15050 95 LLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSagsvnialqrlfgleappLDFLYSPGGVILAEITFYTP 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 152 FVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAG 231
Cdd:PRK15050 175 FVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSK 254
|
250 260
....*....|....*....|....
gi 504513074 232 IRENLD-PTIAAAATMMVGAALVL 254
Cdd:PRK15050 255 AIVDFDyPTACAIAVVNLALSLGL 278
|
|
| YnjC |
COG4135 |
ABC-type uncharacterized transport system YnjBCD, permease component [General function ... |
20-224 |
8.79e-13 |
|
ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];
Pssm-ID: 443310 [Multi-domain] Cd Length: 564 Bit Score: 67.97 E-value: 8.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 20 GAAMLLFLIVPVLVIVPL---SFnAGSFlSYPL---TGFSLR-WYREFFNsseWLGALGNSLLIAPLATLLATVLGVLAS 92
Cdd:COG4135 306 LALMLLIALLSLLGLALLllwSF-AGRW-RFPDalpSSWTLRfWQRAAPG---LLEPLGNTLLLALASALIALVLVLACL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 93 VGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAA 172
Cdd:COG4135 381 EAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVA 460
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 504513074 173 ASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTL 224
Cdd:COG4135 461 ASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATL 512
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
43-260 |
9.76e-13 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 66.70 E-value: 9.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 43 SFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVA 122
Cdd:PRK10971 33 SALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 123 VGMFFFFAK------------LSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPL 190
Cdd:PRK10971 113 LTLASLFSVngwygewlakfdIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPE 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504513074 191 IAPGVFSGALFAFATSFDEVIVTLFLASP---RQRTLPLQMFAGIRENLDPTIAAAATMMVGAALVLLIVMEI 260
Cdd:PRK10971 193 LSPALLAGVALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINT 265
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
70-255 |
1.40e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.61 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 70 LGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLG 149
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 150 V----PFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLP 225
Cdd:cd06261 81 LlliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 504513074 226 LQMFAGIRENLDPTIAAAATMMVGAALVLL 255
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
21-207 |
3.76e-12 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 65.86 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 21 AAMLLFLIVPVLVIVPLSF--NAGSFLSypLTGFSlrwyrEFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRG 98
Cdd:TIGR03262 12 LALLLFLLLPLLALLTKSVydSDGDFIG--LANFA-----EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 99 EFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL---------GLVLAHAMLGVPFVVITVTAVLKNYDHNLT 169
Cdd:TIGR03262 85 RIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLggfsiygfwGIVIGEVFYTFPHALMILVTALSLADGRLY 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 504513074 170 RAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSF 207
Cdd:TIGR03262 165 EAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
10-229 |
4.36e-07 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 50.60 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 10 RLWNTFFnfYGAAmLLFLIVPVLVIVPLSFNAGSFlsypltgfslrwyREFFNSSEWlGALGNSLLIAPLATLLATVLGV 89
Cdd:PRK09433 278 RLWDGLL--IVLA-LLLLLPPLLAVVVSGLNASLL-------------RVLAQPALW-QALWTSLRIALAAALLAVVLTM 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 90 L-----ASVGLVRGEFRGKSLVMAVLIsPMIAPVVIVAVGMFFFFAKLSLLNSYLGL--VLAHAMLGVPFVVITVTAVLK 162
Cdd:PRK09433 341 MllwssRELRLRQRKLAAQALELSGML-ILAMPGIVLATGLFLLLRNTTDLPASALGivILTNALMALPYALRVLEPPMR 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504513074 163 NYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSF-DEVIVTLFlASPRQRTLPLQMF 229
Cdd:PRK09433 420 DIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLgDFGVIALF-GSQDFRTLPFLLY 486
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
84-260 |
2.17e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.91 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 84 ATVLGVLASVGLVRgefRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYLGLVLAHAMLGVPFVVITVTAVLKN 163
Cdd:pfam00528 1 GIPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 164 YDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPrqRTLPLQMFAGIRENLDPTIAAA 243
Cdd:pfam00528 78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGP 155
|
170
....*....|....*..
gi 504513074 244 ATMMVGAALVLLIVMEI 260
Cdd:pfam00528 156 VLAAALILLLLNLLVDI 172
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
1-228 |
2.20e-06 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 47.78 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 1 MRQQGEVGIRLWNTFFnfygaAMLLFL---IVPVLVIVPLSFNAGSFLSYPLTGFSLRWyreffnsSEWLGALG------ 71
Cdd:PRK10998 3 MVQPKSQKLRLFATHL-----LLLGFIaliMFPLLMVIAISLREGNFATGSLIPEQISW-------EHWKLALGfsveha 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 72 ----------------NSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSL- 134
Cdd:PRK10998 71 dgrvtpppfpvllwlwNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQy 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 135 -----LNSYLGLVLAHaMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDE 209
Cdd:PRK10998 151 ipfigLNTHGGVIFAY-LGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITE 229
|
250 260
....*....|....*....|
gi 504513074 210 V-IVTLFLASPRQRTLPLQM 228
Cdd:PRK10998 230 VpVASLLLRDVNSYTLAVGM 249
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
37-256 |
5.21e-05 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 44.06 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 37 LSFNAGSFLSYPLTGFSLRWyREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIA 116
Cdd:PRK09433 14 VALALLALLALWLHAPGGDW-DAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 117 PVVIVAVGMFFFFAKLSLLNSYL---------------GLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLL 181
Cdd:PRK09433 93 PVLVAVFGLLSVYGRSGWLAQLLqalglewpfsiyglqGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 182 AFRKVTFPLIA---PGVFSGALFAFATSFdeVIVTLFLASPRQRTLPLQMFAGIRENLDPTIAAAAT---MMVGAALVLL 255
Cdd:PRK09433 173 FFRLVEWPYLRrqlPPVAALIFMLCFTSF--ATVLTLGGGPKATTIELAIYQALSFDFDLARAALLAllqMVLCLGLVLL 250
|
.
gi 504513074 256 I 256
Cdd:PRK09433 251 S 251
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
73-180 |
5.46e-05 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 42.92 E-value: 5.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 73 SLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFFAK------LSLLNSYLGLVLAHA 146
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80
|
90 100 110
....*....|....*....|....*....|....
gi 504513074 147 MLGVPFVVITVTAVLKNYDHNLTRAAASLGASPL 180
Cdd:NF038017 81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRW 114
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
138-257 |
1.22e-04 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 42.77 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 138 YLGLVLAHamlgVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLA 217
Cdd:PRK10683 188 YIGIVYAY----LPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLG 263
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 504513074 218 SPRQRTLPLQMFAGIRENLD-PTIAAAATMMvgaaLVLLIV 257
Cdd:PRK10683 264 GPDSIMIGRVLWQEFFNNRDwPVASAVAIIM----LLLLIV 300
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
59-220 |
1.46e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 42.06 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 59 EFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVLISPMIAPVVIVAVGMFFFfaklslLNSY 138
Cdd:COG0600 52 ELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWF------GIGE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 139 LGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLAS 218
Cdd:COG0600 126 ASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGA 205
|
..
gi 504513074 219 PR 220
Cdd:COG0600 206 SS 207
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
24-228 |
2.31e-04 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 41.66 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 24 LLFLIVPVLVIVPLSFNAGsflsypltgfsLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGK 103
Cdd:PRK11602 31 AFILVVPMIYIFVQAFSKG-----------LMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 104 SLVMAVLISPM-IAPVVIVAVGMFFFFAK-----------LSLLNSYLGLVLAHAMLGVPFVVITVTAVLKNYDHNLTRA 171
Cdd:PRK11602 100 QLLLTLLDIPFaVSPVVAGLVYLLFYGSNgplggwldehnLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEA 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 172 AASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEV-IVTLFLASPRQRT--LPLQM 228
Cdd:PRK11602 180 AILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFgAVSVVSGSIRGETlsLPLQI 239
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
23-203 |
2.89e-04 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 41.60 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 23 MLLFLIVPVLVIVPLSF---NAGSFLSYPltgFSLRWYREFFNSSeWLGALGNSLLIAPLATLLATVLGVLASVGLVRGE 99
Cdd:PRK09497 19 LVLFVFLPNLMIIGTSFltrDDANFVKMV---FTLDNYTRLLDPL-YAEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 100 FRGKSLVMAVLISPMIAPVVIVAVGMFFFFAKLSLLNSYL-----------------GLVLAHAMLGVPFVVITVTAVLK 162
Cdd:PRK09497 95 HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLlwlgvidtpirimftesAVIIGLVYILLPFMVLPLYSSIE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 504513074 163 NYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAF 203
Cdd:PRK09497 175 KLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVL 215
|
|
| pstA |
PRK11268 |
phosphate ABC transporter permease PstA; |
69-221 |
9.08e-04 |
|
phosphate ABC transporter permease PstA;
Pssm-ID: 183065 [Multi-domain] Cd Length: 295 Bit Score: 40.05 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 69 ALGNSLLIAPLATLLATVLGVLASVGLvrGEFRGKSLVMAV--LISPMIAPVVIVAVGMFFFFAKLSLLNSYLGL--VLA 144
Cdd:PRK11268 82 AIAGSGLLILWATVVGTPLGIMAGIYL--AEYGRKSWLAEVirFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWagVIA 159
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504513074 145 HAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQ 221
Cdd:PRK11268 160 LALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQ 236
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
10-219 |
1.86e-03 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 39.28 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 10 RLWNTFFNFYGAAMLLFLIVPVLVIVPLSFNagSFLSYPLTgFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGV 89
Cdd:TIGR03262 277 RVRDAACLVYCAIISAALLAVVGMAVYASLV--KFWPYNLS-LTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGTILVF 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 90 LASVGLVRGefRGKSLVMAVL----ISPMIAPVVIVAVGMFFFFAKLSllNSYLGLVLAHAMLGVPFVV-------ITVT 158
Cdd:TIGR03262 354 GGAYLIEKT--RGFGLLRGVLrflaILPMAVPGLVLGLGYIFFFNAPT--NPLNGLYGTMALLVLCTVVhfytvshLTAV 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504513074 159 AVLKNYDHNLTRAAASLGASPLLAFRKVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASP 219
Cdd:TIGR03262 430 TALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSP 490
|
|
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
79-191 |
2.37e-03 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 39.17 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 79 LATLLATVLG-VLASvgLVRGE-FRGKSLVMAVLISPMIAPVVI---VAVGMF--FFFAKLSLLNSYLGL--------VL 143
Cdd:PRK10999 296 LTVVLTVAVGmVLAC--LVQWEaLKGKAVYRVLLILPYAVPSFIsilIFKGLFnqSFGEINMMLSALFGIkpawfsdpTL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 504513074 144 AHAM-------LGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFRKVTFPLI 191
Cdd:PRK10999 374 AKTMilivntwLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLL 428
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
31-232 |
5.02e-03 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 37.98 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 31 VLVIVPLSFNAGSFLSYPLTGFSLRWYREFFNSSEWLGALGNSLLIAPLATLLATVLGVLASVGLVRGEFRGKSLVMAVL 110
Cdd:TIGR01253 286 LLILLALFFLFPPLLAIIIDALNSRNLLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSRELEALHKMKAGQFI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504513074 111 ISP----MIAPVVIVAVGMFFFFAKLSLLNSYLG--LVLAHAMLGVPFVVITVTAVLKNYDHNLTRAAASLGASPLLAFR 184
Cdd:TIGR01253 366 EMAgmliLAIPGIVLAMGFFLLLNDRDFLNIDADgiVIFCNALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFK 445
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 504513074 185 KVTFPLIAPGVFSGALFAFATSFDEVIVTLFLASPRQRTLPLQMFAGI 232
Cdd:TIGR01253 446 LIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYQQI 493
|
|
| |
