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Conserved domains on  [gi|504513348|ref|WP_014700450|]
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transposase [Pectobacterium parmentieri]

Protein Classification

transposase( domain architecture ID 11459289)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli IS150 protein InsAB

CATH:  1.10.10.10
Gene Ontology:  GO:0006313|GO:0003677|GO:0004803
PubMed:  20885819

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-50 2.19e-14

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


:

Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 61.09  E-value: 2.19e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 504513348  2 TRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRRK 50
Cdd:COG2963   4 KRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGG 52
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-50 2.19e-14

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 61.09  E-value: 2.19e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 504513348  2 TRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRRK 50
Cdd:COG2963   4 KRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGG 52
HTH_Tnp_1 pfam01527
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 2-47 1.49e-11

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.


Pssm-ID: 426308 [Multi-domain]  Cd Length: 75  Bit Score: 53.51  E-value: 1.49e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 504513348   2 TRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:pfam01527  3 KRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYE 48
IS66_access_TnpA NF038385
IS66-like element accessory protein TnpA;
3-48 7.76e-11

IS66-like element accessory protein TnpA;


Pssm-ID: 439678 [Multi-domain]  Cd Length: 190  Bit Score: 54.33  E-value: 7.76e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 504513348   3 RQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRR 48
Cdd:NF038385  86 RPNFSREFKIRLVEQTLQPGACVAQIARENGINDNLLFNWRHLYRN 131
transpos_IS3 NF033516
IS3 family transposase;
9-47 1.56e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 51.41  E-value: 1.56e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348   9 EFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:NF033516   1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYR 39
transpos_IS630 NF033545
IS630 family transposase;
11-49 2.07e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 36.85  E-value: 2.07e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348  11 KRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRR 49
Cdd:NF033545   1 RRARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEG 39
transpos_IS481 NF033577
IS481 family transposase; null
 10-48 3.87e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 33.33  E-value: 3.87e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348  10 FKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRR 48
Cdd:NF033577   1 GRLELVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRA 39
P PHA02535
terminase ATPase subunit; Provisional
 12-46 5.24e-03

terminase ATPase subunit; Provisional


Pssm-ID: 222859 [Multi-domain]  Cd Length: 581  Bit Score: 33.12  E-value: 5.24e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 504513348  12 RRAVALLLESGKSVARMAQELDIKENTLYNWKKLY 46
Cdd:PHA02535   8 RRAAKFLYWQGWTVAEIAEELGLKSRTIYSWKERD 42
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-50 2.19e-14

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 61.09  E-value: 2.19e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 504513348  2 TRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRRK 50
Cdd:COG2963   4 KRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGG 52
HTH_Tnp_1 pfam01527
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 2-47 1.49e-11

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.


Pssm-ID: 426308 [Multi-domain]  Cd Length: 75  Bit Score: 53.51  E-value: 1.49e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 504513348   2 TRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:pfam01527  3 KRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYE 48
IS66_access_TnpA NF038385
IS66-like element accessory protein TnpA;
3-48 7.76e-11

IS66-like element accessory protein TnpA;


Pssm-ID: 439678 [Multi-domain]  Cd Length: 190  Bit Score: 54.33  E-value: 7.76e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 504513348   3 RQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRR 48
Cdd:NF038385  86 RPNFSREFKIRLVEQTLQPGACVAQIARENGINDNLLFNWRHLYRN 131
transpos_IS3 NF033516
IS3 family transposase;
9-47 1.56e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 51.41  E-value: 1.56e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348   9 EFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:NF033516   1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYR 39
Terminase_5 pfam06056
Putative ATPase subunit of terminase (gpP-like); This family of proteins are annotated as ...
 12-47 7.56e-05

Putative ATPase subunit of terminase (gpP-like); This family of proteins are annotated as ATPase subunits of phage terminase after. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.


Pssm-ID: 428745 [Multi-domain]  Cd Length: 58  Bit Score: 36.21  E-value: 7.56e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 504513348  12 RRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:pfam06056  3 RRQARFLYWQGYRPAEIAEMLGLKEATVYSWKQRDE 38
transpos_IS630 NF033545
IS630 family transposase;
11-49 2.07e-04

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 36.85  E-value: 2.07e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348  11 KRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRR 49
Cdd:NF033545   1 RRARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEG 39
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 11-47 7.15e-04

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 33.33  E-value: 7.15e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 504513348  11 KRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYR 47
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRYR 37
HTH_23 pfam13384
Homeodomain-like domain;
9-48 7.34e-04

Homeodomain-like domain;


Pssm-ID: 433164 [Multi-domain]  Cd Length: 50  Bit Score: 33.40  E-value: 7.34e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 504513348   9 EFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRR 48
Cdd:pfam13384  4 ERRRARALLLLAEGLSVKEIAELLGVSRRTVYRWLKRYNE 43
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 1-49 1.40e-03

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 34.83  E-value: 1.40e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 504513348   1 MTRQQYTPEFKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRRR 49
Cdd:COG3415   17 LRKTKDAREARRLRAVLLLAEGLSVREIAERLGVSRSTVYRWLKRYREG 65
transpos_IS481 NF033577
IS481 family transposase; null
 10-48 3.87e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 33.33  E-value: 3.87e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 504513348  10 FKRRAVALLLESGKSVARMAQELDIKENTLYNWKKLYRR 48
Cdd:NF033577   1 GRLELVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRA 39
P PHA02535
terminase ATPase subunit; Provisional
 12-46 5.24e-03

terminase ATPase subunit; Provisional


Pssm-ID: 222859 [Multi-domain]  Cd Length: 581  Bit Score: 33.12  E-value: 5.24e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 504513348  12 RRAVALLLESGKSVARMAQELDIKENTLYNWKKLY 46
Cdd:PHA02535   8 RRAAKFLYWQGWTVAEIAEELGLKSRTIYSWKERD 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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