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Conserved domains on  [gi|504535887|ref|WP_014722989|]
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MULTISPECIES: sulfate ABC transporter permease subunit CysW [Burkholderia]

Protein Classification

sulfate ABC transporter permease( domain architecture ID 10790587)

sulfate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter that is involved in the transport of sulfate

Gene Ontology:  GO:0015419|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 24-261 1.85e-179

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443356  Cd Length: 281  Bit Score: 496.56  E-value: 1.85e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  24 DPVTEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASW 103
Cdd:COG4208    9 SATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 104 AIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLM 183
Cdd:COG4208   89 AITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLM 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504535887 184 QAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:COG4208  169 QEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYN 246
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 24-261 1.85e-179

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 496.56  E-value: 1.85e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  24 DPVTEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASW 103
Cdd:COG4208    9 SATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 104 AIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLM 183
Cdd:COG4208   89 AITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLM 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504535887 184 QAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:COG4208  169 QEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYN 246
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 32-261 3.02e-130

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 371.34  E-value: 3.02e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   32 VRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFR 111
Cdd:TIGR02140   1 VRYLLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  112 GKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEE 191
Cdd:TIGR02140  81 GKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQE 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  192 EAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:TIGR02140 161 EAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQ 230
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
33-261 5.60e-102

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 300.51  E-value: 5.60e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  33 RWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRG 112
Cdd:PRK11602  19 KWFLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 113 KALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEE 192
Cdd:PRK11602  99 RQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDE 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504535887 193 AARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:PRK11602 179 AAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYN 247
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-261 1.01e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.81  E-value: 1.01e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  80 IRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWlgpwlqdHDVQIIFA 159
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 160 VPGIVLATIFVtFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVS 239
Cdd:cd06261   74 LPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                        170       180
                 ....*....|....*....|..
gi 504535887 240 GHIRGVTDTMPLHVEILYNEYN 261
Cdd:cd06261  153 GGEAPGPGTGLLLIFAILFPGD 174
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 83-249 5.80e-12

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 63.33  E-value: 5.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  83 TLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWlqdhdvQIIFAVPG 162
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 163 IVLATIFVTFPFVARelIPLMQAQGSDEE--EAARVLGASGWQIFRRVtLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:NF038017  75 MIIAQAVLALPIVAG--LTLAAVQGLDPElrLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGG 151


                 ....*....
gi 504535887 241 HIRGVTDTM 249
Cdd:NF038017 152 NIRGYTRVL 160
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 99-238 1.95e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   99 VCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWlgpwlqdhdvqiIFAVPGIVLATIFVTFPFVARE 178
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIL------------GHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  179 LIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVV 238
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 24-261 1.85e-179

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 496.56  E-value: 1.85e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  24 DPVTEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASW 103
Cdd:COG4208    9 SATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 104 AIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLM 183
Cdd:COG4208   89 AITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLM 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504535887 184 QAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:COG4208  169 QEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYN 246
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 32-261 3.02e-130

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 371.34  E-value: 3.02e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   32 VRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFR 111
Cdd:TIGR02140   1 VRYLLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  112 GKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEE 191
Cdd:TIGR02140  81 GKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQE 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  192 EAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:TIGR02140 161 EAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQ 230
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
33-261 5.60e-102

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 300.51  E-value: 5.60e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  33 RWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRG 112
Cdd:PRK11602  19 KWFLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 113 KALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEE 192
Cdd:PRK11602  99 RQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDE 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504535887 193 AARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:PRK11602 179 AAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYN 247
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 35-261 2.54e-95

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 283.09  E-value: 2.54e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   35 LLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKA 114
Cdd:TIGR00969  17 LSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRK 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  115 LLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAA 194
Cdd:TIGR00969  97 LLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAA 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887  195 RVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:TIGR00969 177 ATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYD 243
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 35-261 5.23e-71

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 220.78  E-value: 5.23e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  35 LLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKA 114
Cdd:COG0555   11 LTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 115 LLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAA 194
Cdd:COG0555   91 LVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAA 170

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887 195 RVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:COG0555  171 ATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGD 237
cysT CHL00187
sulfate transport protein; Provisional
 35-260 9.83e-55

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 178.28  E-value: 9.83e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  35 LLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKA 114
Cdd:CHL00187  12 SIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 115 LLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAA 194
Cdd:CHL00187  92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504535887 195 RVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEY 260
Cdd:CHL00187 172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 73-251 3.57e-54

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 176.01  E-value: 3.57e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  73 DPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDH 152
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEEL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 153 -DVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGE 231
Cdd:COG4149   82 fGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161

                        170       180
                 ....*....|....*....|
gi 504535887 232 FGAVSVVSGHIRGVTDTMPL 251
Cdd:COG4149  162 FGATLMFAGNIPGKTQTLPL 181
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 35-261 4.40e-48

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 161.72  E-value: 4.40e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   35 LLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKA 114
Cdd:TIGR02139   7 LSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  115 LLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAA 194
Cdd:TIGR02139  87 IVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAA 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887  195 RVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:TIGR02139 167 ASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYD 233
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 81-251 1.82e-44

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 150.86  E-value: 1.82e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   81 RLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAV 160
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  161 PGIVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170
                  ....*....|.
gi 504535887  241 HIRGVTDTMPL 251
Cdd:TIGR02141 161 NIPGETQTIPL 171
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
35-261 2.31e-44

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 152.60  E-value: 2.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  35 LLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKA 114
Cdd:PRK10971  15 LSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRT 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 115 LLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAA 194
Cdd:PRK10971  95 LLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAA 174

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887 195 RVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIRGVTDTMPLHVEILYNEYN 261
Cdd:PRK10971 175 ETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 241
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 61-253 3.00e-42

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 145.62  E-value: 3.00e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   61 RKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFG 140
Cdd:TIGR01581   4 RLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  141 AQGWLGPWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYG 220
Cdd:TIGR01581  84 RNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAG 163

                         170       180       190
                  ....*....|....*....|....*....|...
gi 504535887  221 VILCNARAMGEFGAVSVVSGHIRGVTDTMPLHV 253
Cdd:TIGR01581 164 LVLAWARALGEFGATLMFAGSIQGKTRTLPLAI 196
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
27-243 3.98e-41

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 149.93  E-value: 3.98e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  27 TEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIA 106
Cdd:COG1178    3 TRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 107 KFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDH---DVQIIFAVPGIVLATIFVTFPFVARELIPLM 183
Cdd:COG1178   83 RTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfglEPPDIYGLGGIILVLVLFNYPYVYLLLRAAL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 184 QAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHIR 243
Cdd:COG1178  163 RSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT 222
modB PRK09421
molybdate ABC transporter permease subunit;
74-251 9.69e-39

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 136.59  E-value: 9.69e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  74 PDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDH- 152
Cdd:PRK09421   5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWf 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 153 DVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEF 232
Cdd:PRK09421  85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164

                        170
                 ....*....|....*....
gi 504535887 233 GAVSVVSGHIRGVTDTMPL 251
Cdd:PRK09421 165 GATITFVSNIPGETQTIPS 183
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 29-251 3.19e-33

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 122.91  E-value: 3.19e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  29 PRAVRWLLIGVALAFLAFfLVVPLAAVFFEALRKG-------VGF----YLESLADPDAWSAIRLTLTVAVIAVPLNLVF 97
Cdd:COG1177    2 SRLGRLLLRLFLALVLLF-LYLPILVLVLYSFNDSwfltfppEGFtlrwYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  98 GVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLqdhdvqiifavpGIVLATIFVTFPFVAR 177
Cdd:COG1177   81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW------------GLILAHVVFTLPFVVL 148

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504535887 178 ELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGhirGVTDTMPL 251
Cdd:COG1177  149 VVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG---PGVTTLPV 219
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 30-240 1.09e-30

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 116.79  E-value: 1.09e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  30 RAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGF-----------YLESLADPDAWSAIRLTLTVAVIAVPLNLVFG 98
Cdd:COG1176    8 RLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYggvvpgftlenYARLFTDPLYLKVLLRTLWIALLTTLICLLLG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  99 VCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQ-----DHDVQIIFAVPGIVLATIFVTFP 173
Cdd:COG1176   88 YPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLalgliDEPLRLLYTEFAVVIGLVYVYLP 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887 174 FVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:COG1176  168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG 234
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-253 3.19e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 116.80  E-value: 3.19e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  25 PVTEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVG------FYLESLADPDAWSAIRLTLTVAVIAVPLNLVFG 98
Cdd:COG1178  279 RRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDdnltldNYRFVLLDPSLLRALLNSLLLALLAALLAVLLA 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  99 VCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGpwlqdhdvqIIFAVPGIVLATIFVTFPFVARE 178
Cdd:COG1178  359 LLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL---------LYGTLAILVLAYVVRFLPFALRS 429

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504535887 179 LIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSghiRGVTDTMPLHV 253
Cdd:COG1178  430 LEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLR---PPGFETLAVLI 501
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
30-240 5.09e-28

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 109.84  E-value: 5.09e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  30 RAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKG---------VGF--YLESLADPDAWSAIRLTLTVAVIAVPLNLVFG 98
Cdd:COG1175   17 RLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWnllgpppefVGLdnYARLFTDPRFWNALGNTLLFTVVSVPLQLVLG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  99 VCASWAIAKfEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQ--------GWLG----PWLQDHDvqiiFAVPGIVLA 166
Cdd:COG1175   97 LLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDygllnallGALGlepiNWLGDPS----LALPAVIIV 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504535887 167 TIFVTFPFVAreLIPL--MQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:COG1175  172 TVWKGTGFNM--LIFLagLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTG 245
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-261 1.01e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.81  E-value: 1.01e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  80 IRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWlgpwlqdHDVQIIFA 159
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 160 VPGIVLATIFVtFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVS 239
Cdd:cd06261   74 LPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                        170       180
                 ....*....|....*....|..
gi 504535887 240 GHIRGVTDTMPLHVEILYNEYN 261
Cdd:cd06261  153 GGEAPGPGTGLLLIFAILFPGD 174
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 32-240 6.25e-23

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 98.98  E-value: 6.25e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   32 VRWLLIGVALAFLAFFLVVPLAAVFFEALRK------GVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAI 105
Cdd:TIGR03262   2 IARLLLAGMILALLLFLLLPLLALLTKSVYDsdgdfiGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  106 AKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDvqiIFAVPGIVLATIFVTFPFVAreLIPLMQA 185
Cdd:TIGR03262  82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFS---IYGFWGIVIGEVFYTFPHAL--MILVTAL 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 504535887  186 QGSDEE--EAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:TIGR03262 157 SLADGRlyEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG 213
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 29-237 5.92e-17

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 79.66  E-value: 5.92e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  29 PRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVGFYLES----LADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWA 104
Cdd:PRK15050  20 RRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLGLATyravLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALV 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 105 IAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQ------DHDVQIIFAVPGIVLATIFVTFPFVARE 178
Cdd:PRK15050 100 LAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQrlfgleAPPLDFLYSPGGVILAEITFYTPFVVRP 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504535887 179 LIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSV 237
Cdd:PRK15050 180 LLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLF 238
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 33-211 9.99e-16

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 77.57  E-value: 9.99e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  33 RWLLIGV-ALAFLAFFLVVPLAAVFFEAlrkGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFR 111
Cdd:PRK09433   1 GWLIPGVlAAALLVALALLALLALWLHA---PGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 112 GKALLTTLIDLPFsVSPVISGLVYVL-LFGAQGWLGPWLQ--DHDVQI-IFAVPGIVLATIFVTFPFVARELIPLMQAQG 187
Cdd:PRK09433  78 GRGLLLRLCAMTL-VLPVLVAVFGLLsVYGRSGWLAQLLQalGLEWPFsIYGLQGILLAHVFFNLPLATRLLLQALESIP 156

                        170       180
                 ....*....|....*....|....
gi 504535887 188 SDEEEAARVLGASGWQIFRRVTLP 211
Cdd:PRK09433 157 AEQRQLAAQLGMRGWQFFRLVEWP 180
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 30-214 5.68e-15

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 73.59  E-value: 5.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  30 RAVRWLLIGVALAFLAFFLVVPLAAVFF-------EALRKGVGF---------YLESLADPDAWSAIRLTLTVAVIAVPL 93
Cdd:COG0395   10 RRLGRILLYLLLILLALLFLFPLYWMVVtsfkppaEIFSGPPSLlpseftlenYRAAFTDGPFGRYLLNSLIVAVVSTVL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  94 NLVFGVCASWAIAKFEFRGKALLTTLIdLPFSVSPVISGLV-YVLLFGAQGWLGPWLqdhdvqiifavpGIVLATIFVTF 172
Cdd:COG0395   90 SLLLSSLAAYALARFRFRGRKLLFLLI-LATLMIPGQVLLIpLYLLFRQLGLLNTYW------------GLILPYLAFGL 156

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 504535887 173 PF-----------VARELiplmqaqgsdeEEAARVLGASGWQIFRRVTLPNVK 214
Cdd:COG0395  157 PFgifllrqffrsIPREL-----------EEAARIDGASEFRIFWRIVLPLSK 198
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 29-236 3.41e-12

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 66.78  E-value: 3.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  29 PRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGVgfyLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKF 108
Cdd:PRK09433 273 DSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASL---LRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSREL 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 109 EFRGKALLTTLIDLPFSVSPVISGLVYvllfgAQGW--LgpwLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQ 186
Cdd:PRK09433 350 RLRQRKLAAQALELSGMLILAMPGIVL-----ATGLflL---LRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDI 421

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 504535887 187 GSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVS 236
Cdd:PRK09433 422 AARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIA 471
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 83-249 5.80e-12

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 63.33  E-value: 5.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  83 TLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWlqdhdvQIIFAVPG 162
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 163 IVLATIFVTFPFVARelIPLMQAQGSDEE--EAARVLGASGWQIFRRVtLPNVKWGLLYGVILCNARAMGEFGAVSVVSG 240
Cdd:NF038017  75 MIIAQAVLALPIVAG--LTLAAVQGLDPElrLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGG 151


                 ....*....
gi 504535887 241 HIRGVTDTM 249
Cdd:NF038017 152 NIRGYTRVL 160
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 29-230 4.89e-11

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 62.13  E-value: 4.89e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  29 PRAVRWLLIGVA--LAFLAFFLVVPLAAVFFEALR-KGVGFYLE---SLADPDAWSAIRLTLTVAVIAVPLNLVFGVCAS 102
Cdd:COG4132    8 RRRKWLAWLGLLpfFLFVLLFLLLPTVWVVIGAFQdDDGGFTLAnyaELTSPFYLQAFWNSIWLSLASALIGAVIGLLLA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 103 WAIAKFefrGKALLTTLIDlpfSVSPVISGL-------VYVLLFGAQGWLGPWLQDHDVQI-----IFAVPGIVLATIFV 170
Cdd:COG4132   88 YALRRG---GPGWLRRAVL---AFSGVASNFagvplafAFIATLGRNGLVTLLLKQLGIDLydgfnLYSFWGLILVYLYF 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 171 TFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMG 230
Cdd:COG4132  162 QIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFG 221
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 30-241 3.04e-10

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 59.97  E-value: 3.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   30 RAVRWLLIGVALAFLAFFLVVpLAAVFFEALR-----KGVGFYLESLADPDAWS---------AIRLTLTVAVIAVPLNL 95
Cdd:TIGR02138   2 KIFKGLLLFSAVIIVLVLLLI-VLFLLYEAIPafeknGILNFLTGTVWDPGSGPvqeqygalpLIVGTLITSLIALLIAV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   96 VFGVCAswAIAKFEF---RGKALLTTLIDLPFSVSPVISGLvyvllFGAQgWLGPWLQDH-------DVQIIFAVPGIVL 165
Cdd:TIGR02138  81 PVGIGI--AIFLSEIapkRVRSVLKPVVELLAGIPSVVYGF-----WGLF-VLVPFLKPHfqpflgsNLGLIPLFGGPIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  166 ATIFVTF----PFVAR------ELIPLMQaqgsdeEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAV 235
Cdd:TIGR02138 153 TAGIVLAimilPTIASisrdalRAVPRSY------KEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAV 226


                  ....*.
gi 504535887  236 SVVSGH 241
Cdd:TIGR02138 227 TMVIGN 232
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 30-232 3.60e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 56.70  E-value: 3.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  30 RAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGvGFYLESLADPDAWSA---IRL------------TLTVAVIAVPLN 94
Cdd:COG3833   11 RRLKLGLRHLVLIILAIIALFPILWVVSASFNPG-GSLYSSSLIPENFTLenyKKLftetpflrwflnSLIVAVVTAIIS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  95 LVFGVCASWAIAKFEFRG-KALLTTLidLPFSVSPVISGLV--YVLL--FGAqgwlgpwLQDHDVQIIFAVPGIVLATIF 169
Cdd:COG3833   90 VFLAALAAYAFSRFRFKGrKAGLLAL--LLLQMFPAFLALValYLLLsaLGL-------LNTLLGLILVYLGGAIPFNTW 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504535887 170 V---TFPFVARELiplmqaqgsdeEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEF 232
Cdd:COG3833  161 LmkgYFDTIPKEL-----------DEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDF 215
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 37-232 5.22e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 56.23  E-value: 5.22e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  37 IGVALAFLAFFLVVPLAAVFFEAL--RKGVGFY-----LES---LADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIA 106
Cdd:PRK09497  12 IVTIVGWLVLFVFLPNLMIIGTSFltRDDANFVkmvftLDNytrLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 107 KFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQ-----DHDVQIIFAVPGIVLATIFVTFPFVARELIP 181
Cdd:PRK09497  92 KLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLwlgviDTPIRIMFTESAVIIGLVYILLPFMVLPLYS 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504535887 182 LMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEF 232
Cdd:PRK09497 172 SIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 33-211 7.27e-08

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 53.38  E-value: 7.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   33 RWLLIGV-ALAFLAFFLVVPLAAVFFEAlrkGVGFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFR 111
Cdd:TIGR01253   4 GHLAGGVsAISFIIAFAGAAFLAIFALA---GEDDWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  112 GKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWLGPWLQDHDVQI---IFAVPGIVLATIFVTFPFVARELIPLMQAQGS 188
Cdd:TIGR01253  81 GKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWqfhIYGLQGILIAHLFFNIPLAAQLFLQALENIPG 160

                         170       180
                  ....*....|....*....|...
gi 504535887  189 DEEEAARVLGASGWQIFRRVTLP 211
Cdd:TIGR01253 161 EQRQLAAQLGLQGWHFFKFVEWP 183
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 30-223 8.16e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 49.21  E-value: 8.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  30 RAVRWLLIGVALAFLAFFLVVpLAAVFFEALRKGV---GFYL---ESLADPDAW-SAIRLTLTVAVIAVPLNLVFGVCAS 102
Cdd:PRK09500   3 RLLRGGFMTLVYAYLYIPIII-LIVNSFNSSRFGInwkGFTTkwyELLFNNDSLlQAAQHSLTMAVFSATFATLIGSLTA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 103 WAIAKFEFRGKALLTTLIdlpFSV--SP----VISGLVYVLLFGAQgwLGPW--LQDHdvqIIFAVPgivlatiFVTFPF 174
Cdd:PRK09500  82 VALYRYRFRGKKFVSGML---FVVmmSPdivmAISLLVLFMLLGIQ--LGFWslLFAH---ITFCLP-------FVVVTV 146

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504535887 175 VAReliplmqAQGSDEE--EAARVLGASGWQIFRRVTLPNVKWGLLYGVIL 223
Cdd:PRK09500 147 YSR-------LKGFDVRmlEAAKDLGASEFTILRKIILPLALPAVAAGWLL 190
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 39-237 2.34e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 48.76  E-value: 2.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   39 VALAFLAFFLVVPLAAVFFEALRKGVgfYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTT 118
Cdd:TIGR01253 286 LLILLALFFLFPPLLAIIIDALNSRN--LLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSRELEALHKMKAGQ 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  119 LIDLPFSVSPVISGLVYVLLFGAqgwlgpWLQDHDVQIIFAVPGIVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLG 198
Cdd:TIGR01253 364 FIEMAGMLILAIPGIVLAMGFFL------LLNDRDFLNIDADGIVIFCNALMAIPFALKILEAPFHDIMARYEMLCNSLG 437

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 504535887  199 ASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSV 237
Cdd:TIGR01253 438 IEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIAL 476
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 66-240 1.25e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 46.00  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  66 FYLESLADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKF-EFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGW 144
Cdd:PRK10592  51 WYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAH 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 145 LGPWLQDHDVQIIFaVPGIVLATIFVTFPFVAReliplMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILC 224
Cdd:PRK10592 131 AIGWPADRGMLTIW-LAHVTFCTAYVAVVISSR-----LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLA 204

                        170
                 ....*....|....*.
gi 504535887 225 NARAMGEFGAVSVVSG 240
Cdd:PRK10592 205 FTLSLDDLVIASFVSG 220
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 99-238 1.95e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   99 VCASWAIAKFEFRGKALLTTLIDLPFSVSPVISGLVYVLLFGAQGWlgpwlqdhdvqiIFAVPGIVLATIFVTFPFVARE 178
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIL------------GHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  179 LIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVV 238
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 47-231 6.28e-05

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 43.49  E-value: 6.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  47 FLVVPLAAVFFEALRKGVG-----FYLESLADPDAWSAIR--------LTLTVAVIAVPLnlvfGVCASWAIAKFEFRGK 113
Cdd:COG0581    1 LALLPLVWILGTVLVKGLPalsweFLTSSPSPGPEGGGILpaivgtllLVLLATLIAVPL----GVLAAIYLAEYARGGR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 114 --ALLTTLIDLPFSVSPVISGL----VYVLLFGAQ--GWLGpwlqdhdvqiifavpGIVLAtiFVTFPFVAR------EL 179
Cdd:COG0581   77 laRLIRFAIDVLAGVPSIVYGLfgyaLFVLTLGLGfsLLAG---------------ALALA--LLMLPVVIRtteealRL 139

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 504535887 180 IPlmqaqgSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGE 231
Cdd:COG0581  140 VP------NSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGE 185
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 77-213 1.85e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 1.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  77 WSAIRLTLTVAVIAVPLNLVFGVCASwAIAKFeFRGK--ALLTTLIDLPFSVSPVISGLVYVLLFGAqgwlGPWLqdhdv 154
Cdd:COG1173   75 LYGARISLLVGLLAVLIALVIGVLLG-LLAGY-FGGWvdAVLMRLVDVLLAFPSLLLAIALVAVLGP----GLLN----- 143

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504535887 155 qiifavpgIVLATIFVTFPFVARelipLMQAQ-----GSDEEEAARVLGASGWQIFRRVTLPNV 213
Cdd:COG1173  144 --------VILALGLTGWPGYAR----LVRAQvlslrEREYVEAARALGASPLRIIFRHILPNV 195
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 27-211 4.01e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 41.29  E-value: 4.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  27 TEPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRKGV--------GFYLESLADPDAWSAIRLTLTVAVIAVPLNLVFG 98
Cdd:COG0600    2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLlpspsavlAALVELLASGELWEHLLASLLRVLLGFALAALLG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  99 VCASWAIAKFEFrGKALLTTLIDLPFSVSPVISGLVYVLLFGaqgwlgpwlqdhdvqiIFAVPGIVLATIFVTFPFVare 178
Cdd:COG0600   82 VPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALAPLLILWFG----------------IGEASKIFVIFLGAFFPIL--- 141

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 504535887 179 lipLMQAQG-----SDEEEAARVLGASGWQIFRRVTLP 211
Cdd:COG0600  142 ---LNTAAGvrsvdPELLELARSLGASRWQILRKVVLP 176
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 72-211 1.87e-03

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 39.85  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  72 ADPDAWSAIRLTLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIDLPFSVsPVISglvyvLLFGAQGWLGPWLQD 151
Cdd:COG4135  350 AAPGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLV-PQIA-----FLFGLQVLLLRLGLD 423

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887 152 HDvqiIFAVpgiVLATIFVTFPFVARELIPLMQAQGSDEEEAARVLGASGWQIFRRVTLP 211
Cdd:COG4135  424 GT---WLAV---IWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLP 477
malG PRK10998
maltose ABC transporter permease MalG;
83-211 2.09e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 39.31  E-value: 2.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  83 TLTVAVIAVPLNLVFGVCASWAIAKFEFRGKALLTTLIdLPFSVSPVISGLV-YVLLFGAQGWLGPW--LQDHDVQIIFA 159
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGM-LIFQMFPAVLSLVaLYALFDRLGQYIPFigLNTHGGVIFAY 166

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504535887 160 VPGIVLA--TIFVTFPFVARELiplmqaqgsdeEEAARVLGASGWQIFRRVTLP 211
Cdd:PRK10998 167 LGGIALHvwTIKGYFETIDSSL-----------EEAAALDGATPWQAFRLVLLP 209
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 28-256 3.47e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 38.89  E-value: 3.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   28 EPRAVRWLLIGVALAFLAFFLVVPLAAVFFEALRK--------GVGFYLESLADPDAWSA----IRLTLTVAVIAVPLnl 95
Cdd:TIGR03262 274 KPNRVRDAACLVYCAIISAALLAVVGMAVYASLVKfwpynlslTLKHYNFDLMDGGGWEAyknsLRLAATTALIGTIL-- 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887   96 VFGvcASWAIAKFEFRGK--ALLTTLIDLPFSVSPVISGLVYVLLFGAqgwlgPWLQDHDVQIIFAVpgIVLATI--FVT 171
Cdd:TIGR03262 352 VFG--GAYLIEKTRGFGLlrGVLRFLAILPMAVPGLVLGLGYIFFFNA-----PTNPLNGLYGTMAL--LVLCTVvhFYT 422

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504535887  172 FPFVAreLIPLMQAQGSDEEEAARVLGASGWQIFRRVTLPNVKWGLLYGVILCNARAMGEFGAVSVVSGHirgvtDTMPL 251
Cdd:TIGR03262 423 VSHLT--AVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSP-----DTKLA 495


                  ....*
gi 504535887  252 HVEIL 256
Cdd:TIGR03262 496 SVAIL 500
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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