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Conserved domains on  [gi|504537459|ref|WP_014724561|]
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MULTISPECIES: bacteriophage N4 adsorption protein A [Burkholderia]

Protein Classification

bacteriophage N4 adsorption protein A( domain architecture ID 13539588)

bacteriophage N4 adsorption protein A serves as the receptor for phage N4 and is required for its adsorption

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NfrA_C pfam13283
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ...
 389-560 1.66e-59

Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.


:

Pssm-ID: 433085  Cd Length: 173  Bit Score: 195.29  E-value: 1.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  389 GNVTGMPTVQGSVGVRYKPIPDQNVVMTAERLFHIGSLSM-TDWLMRLGYSSEAGTDLRVTEPSWRSWQAYVEGAYFIHA 467
Cdd:pfam13283   1 GDPTGGDTTQGGLGLRWKPLSDQNLVLSAERLFPIGGQAReNDWLLRAGYSGGYGTDLRVDVPSWQTQQLYAEAGRYLQQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  468 GRYIVYSELRYGHTWRLPMLGNRLTVYPHVAVAGDHDNREKDETAIGVGPGIQFRYWFREGRYTAPASYVDVTVQYRFPL 547
Cdd:pfam13283  81 DRRYLTAEARLGRSYRLDDISSRLVVFPYAVLGADYDSAATRGFALGAGPGLAWRYWFREDHYHAPRSYLDLTLQYRFKL 160

                         170
                  ....*....|...
gi 504537459  548 TSAARARGLVVRA 560
Cdd:pfam13283 161 AGDDRGNGVFARA 173
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 54-219 6.93e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 6.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  54 IDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRD 133
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 134 FSAAVAGGKWSAEQQRNLrlawSDSALAANRPHEAGIAL--APLADEKSAVIQVRIAQLSLQAGDHDTAIRMAELAASDA 211
Cdd:COG2956  167 LEKALKLDPDCARALLLL----AELYLEQGDYEEAIAALerALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242


                 ....*...
gi 504537459 212 ATDTERNM 219
Cdd:COG2956  243 PSDDLLLA 250
 
Name Accession Description Interval E-value
NfrA_C pfam13283
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ...
 389-560 1.66e-59

Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.


Pssm-ID: 433085  Cd Length: 173  Bit Score: 195.29  E-value: 1.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  389 GNVTGMPTVQGSVGVRYKPIPDQNVVMTAERLFHIGSLSM-TDWLMRLGYSSEAGTDLRVTEPSWRSWQAYVEGAYFIHA 467
Cdd:pfam13283   1 GDPTGGDTTQGGLGLRWKPLSDQNLVLSAERLFPIGGQAReNDWLLRAGYSGGYGTDLRVDVPSWQTQQLYAEAGRYLQQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  468 GRYIVYSELRYGHTWRLPMLGNRLTVYPHVAVAGDHDNREKDETAIGVGPGIQFRYWFREGRYTAPASYVDVTVQYRFPL 547
Cdd:pfam13283  81 DRRYLTAEARLGRSYRLDDISSRLVVFPYAVLGADYDSAATRGFALGAGPGLAWRYWFREDHYHAPRSYLDLTLQYRFKL 160

                         170
                  ....*....|...
gi 504537459  548 TSAARARGLVVRA 560
Cdd:pfam13283 161 AGDDRGNGVFARA 173
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 315-544 1.02e-09

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 61.47  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 315 QRKFGYRREVEQLQRTWGFVLSAPY---QSAAFGPQGTISVLQPGVE------AYWQPpKIGYQ---NGRILQFFVRGYG 382
Cdd:PRK09782 722 QQRFNFRRLHEEVGRRWTFSFDSSIglrSGAMSTANNNVGGAAPGKSyrsygqLEAEY-RLGRNmllEGDLLSVYSRVFA 800

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 383 TaYDGNGNVTGMPTVQGSVGVRYKPIPDQNVVMTAERLF----HIGSlsmTDWLMRLGYS----SEAGTDLRVTEPSWRS 454
Cdd:PRK09782 801 D-TGENGVMMPVKNPMSGTGLRWKPLRDQIFFLAVEQQLplngQNGA---SDTMLRASASffngGKYSDEWHPNGSGWFA 876

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 455 WQAYVEGAYFIHAGRYIVYSelRYGHTWRLPML-GNRLTVYPHVAvagDHDNREKDETAIGV-GPGIQFRYWFREGRYTA 532
Cdd:PRK09782 877 QNLYLDAAQYTRQDIQAWTA--DYRVSWHQKVAnGQTLEPYAHVQ---DNGYRDKGTQGAQLgGVGVRWNIWTGETHYNA 951

                        250
                 ....*....|..
gi 504537459 533 PASYVDVTVQYR 544
Cdd:PRK09782 952 WPHKVSVGVEYQ 963
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 54-219 6.93e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 6.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  54 IDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRD 133
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 134 FSAAVAGGKWSAEQQRNLrlawSDSALAANRPHEAGIAL--APLADEKSAVIQVRIAQLSLQAGDHDTAIRMAELAASDA 211
Cdd:COG2956  167 LEKALKLDPDCARALLLL----AELYLEQGDYEEAIAALerALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242


                 ....*...
gi 504537459 212 ATDTERNM 219
Cdd:COG2956  243 PSDDLLLA 250
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 40-313 1.23e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   40 VPKAFRLADGAYKAidaGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFP---NSAAVLAQ 116
Cdd:TIGR02917 499 FPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPqeiEPALALAQ 575

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  117 HgYLAQRQMRydvacRDFSAAVAGGKWSAEQQRnlrlAWS--DSALAANRPHEAGIA----LAPLADEkSAVIQVRIAQL 190
Cdd:TIGR02917 576 Y-YLGKGQLK-----KALAILNEAADAAPDSPE----AWLmlGRAQLAAGDLNKAVSsfkkLLALQPD-SALALLLLADA 644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  191 SLQAGDHDTAIR-------------MAELAASDAATDTERNMAAAIAAQARQVDRPpqapadDSAMQHLQHAYDLLREHR 257
Cdd:TIGR02917 645 YAVMKNYAKAITslkralelkpdntEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP------KAALGFELEGDLYLRQKD 718

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 504537459  258 DRDALDAFQQGF--AGGAGNAMNYADAGYAAKRiglNDESVQMFEHSLdadeSEHAFD 313
Cdd:TIGR02917 719 YPAAIQAYRKALkrAPSSQNAIKLHRALLASGN---TAEAVKTLEAWL----KTHPND 769
TPR_19 pfam14559
Tetratricopeptide repeat;
56-115 3.60e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 3.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   56 AGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLA 115
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
 
Name Accession Description Interval E-value
NfrA_C pfam13283
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ...
 389-560 1.66e-59

Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.


Pssm-ID: 433085  Cd Length: 173  Bit Score: 195.29  E-value: 1.66e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  389 GNVTGMPTVQGSVGVRYKPIPDQNVVMTAERLFHIGSLSM-TDWLMRLGYSSEAGTDLRVTEPSWRSWQAYVEGAYFIHA 467
Cdd:pfam13283   1 GDPTGGDTTQGGLGLRWKPLSDQNLVLSAERLFPIGGQAReNDWLLRAGYSGGYGTDLRVDVPSWQTQQLYAEAGRYLQQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  468 GRYIVYSELRYGHTWRLPMLGNRLTVYPHVAVAGDHDNREKDETAIGVGPGIQFRYWFREGRYTAPASYVDVTVQYRFPL 547
Cdd:pfam13283  81 DRRYLTAEARLGRSYRLDDISSRLVVFPYAVLGADYDSAATRGFALGAGPGLAWRYWFREDHYHAPRSYLDLTLQYRFKL 160

                         170
                  ....*....|...
gi 504537459  548 TSAARARGLVVRA 560
Cdd:pfam13283 161 AGDDRGNGVFARA 173
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 315-544 1.02e-09

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 61.47  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 315 QRKFGYRREVEQLQRTWGFVLSAPY---QSAAFGPQGTISVLQPGVE------AYWQPpKIGYQ---NGRILQFFVRGYG 382
Cdd:PRK09782 722 QQRFNFRRLHEEVGRRWTFSFDSSIglrSGAMSTANNNVGGAAPGKSyrsygqLEAEY-RLGRNmllEGDLLSVYSRVFA 800

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 383 TaYDGNGNVTGMPTVQGSVGVRYKPIPDQNVVMTAERLF----HIGSlsmTDWLMRLGYS----SEAGTDLRVTEPSWRS 454
Cdd:PRK09782 801 D-TGENGVMMPVKNPMSGTGLRWKPLRDQIFFLAVEQQLplngQNGA---SDTMLRASASffngGKYSDEWHPNGSGWFA 876

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 455 WQAYVEGAYFIHAGRYIVYSelRYGHTWRLPML-GNRLTVYPHVAvagDHDNREKDETAIGV-GPGIQFRYWFREGRYTA 532
Cdd:PRK09782 877 QNLYLDAAQYTRQDIQAWTA--DYRVSWHQKVAnGQTLEPYAHVQ---DNGYRDKGTQGAQLgGVGVRWNIWTGETHYNA 951

                        250
                 ....*....|..
gi 504537459 533 PASYVDVTVQYR 544
Cdd:PRK09782 952 WPHKVSVGVEYQ 963
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 54-219 6.93e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 6.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  54 IDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRD 133
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 134 FSAAVAGGKWSAEQQRNLrlawSDSALAANRPHEAGIAL--APLADEKSAVIQVRIAQLSLQAGDHDTAIRMAELAASDA 211
Cdd:COG2956  167 LEKALKLDPDCARALLLL----AELYLEQGDYEEAIAALerALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242


                 ....*...
gi 504537459 212 ATDTERNM 219
Cdd:COG2956  243 PSDDLLLA 250
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 50-306 2.30e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 2.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  50 AYKAIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDV 129
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 130 ACRDFSAAVAGGKWSAEQQRNLRlawsDSALAANRPHEAGIALAPLA--DEKSAVIQVRIAQLSLQAGDHDTAIRMAELA 207
Cdd:COG2956   95 AEELLEKLLELDPDDAEALRLLA----EIYEQEGDWEKAIEVLERLLklGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 208 ASDAATDT-----------ERNMAAAIAAQARQVDRppQAPADDSAMQHLQHAYdlLREHRDRDALDAFQQGFAGGAGNA 276
Cdd:COG2956  171 LKLDPDCArallllaelylEQGDYEEAIAALERALE--QDPDYLPALPRLAELY--EKLGDPEEALELLRKALELDPSDD 246

                        250       260       270
                 ....*....|....*....|....*....|
gi 504537459 277 MNYADAGYAAKRIGLnDESVQMFEHSLDAD 306
Cdd:COG2956  247 LLLALADLLERKEGL-EAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 10-207 3.22e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.99  E-value: 3.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  10 AGLARCARLSALALAMSLAWQPPAHAARPLVPKAFRLADGAYKAIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRR 89
Cdd:COG3914   11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  90 EGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVAGGKWSAEQQRNLRLAwsdsALAANRPHEA- 168
Cdd:COG3914   91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA----LRRLGRLEEAi 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 504537459 169 -----GIALAPladeKSAVIQVRIAQLSLQAGDHDTAIRMAELA 207
Cdd:COG3914  167 aalrrALELDP----DNAEALNNLGNALQDLGRLEEAIAAYRRA 206
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-139 4.20e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 4.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  21 LALAMSLAWQPPAHAARPLVPKAFRLADG--------AYKAIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGK 92
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALELDPDnpeafallGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 504537459  93 VDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVA 139
Cdd:COG4783   88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 12-139 5.08e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 5.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  12 LARCARLSALALAMSLAWQppAHAARPLVPKAFRLADGAYKAIdaGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREG 91
Cdd:COG3914   85 ALLLQALGRYEEALALYRR--ALALNPDNAEALFNLGNLLLAL--GRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 504537459  92 KVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVA 139
Cdd:COG3914  161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
53-139 1.17e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  53 AIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLStRFPNSAAVLAQHGYLAQRQMRYDVACR 132
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALK-LDPNNAEALLNLAELLLELGDYDEALA 80


                 ....*..
gi 504537459 133 DFSAAVA 139
Cdd:COG3063   81 YLERALE 87
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 40-313 1.23e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   40 VPKAFRLADGAYKAidaGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFP---NSAAVLAQ 116
Cdd:TIGR02917 499 FPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPqeiEPALALAQ 575

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  117 HgYLAQRQMRydvacRDFSAAVAGGKWSAEQQRnlrlAWS--DSALAANRPHEAGIA----LAPLADEkSAVIQVRIAQL 190
Cdd:TIGR02917 576 Y-YLGKGQLK-----KALAILNEAADAAPDSPE----AWLmlGRAQLAAGDLNKAVSsfkkLLALQPD-SALALLLLADA 644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  191 SLQAGDHDTAIR-------------MAELAASDAATDTERNMAAAIAAQARQVDRPpqapadDSAMQHLQHAYDLLREHR 257
Cdd:TIGR02917 645 YAVMKNYAKAITslkralelkpdntEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP------KAALGFELEGDLYLRQKD 718

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 504537459  258 DRDALDAFQQGF--AGGAGNAMNYADAGYAAKRiglNDESVQMFEHSLdadeSEHAFD 313
Cdd:TIGR02917 719 YPAAIQAYRKALkrAPSSQNAIKLHRALLASGN---TAEAVKTLEAWL----KTHPND 769
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
55-266 1.35e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  55 DAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDF 134
Cdd:COG0457   20 RLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 135 SAAVAGGKWSAEQQRNLRLAWsdsaLAANRPHEAGIAL--APLADEKSAVIQVRIAQLSLQAGDHDTAIRMAELAASDAA 212
Cdd:COG0457  100 DKALELDPDDAEALYNLGLAL----LELGRYDEAIEAYerALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504537459 213 TDTERNMAAAIAAQARQVDRPPQAPADDSAMQHLQHAYDLLREHRDRDALDAFQ 266
Cdd:COG0457  176 AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 30-202 5.71e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 5.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   30 QPPAHAarplvpkafRLADgAYKAidAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPN 109
Cdd:TIGR02917 634 SALALL---------LLAD-AYAV--MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  110 SAAVLAQHGYLAQRQMRYDVACRDFSAAVaggKWSAEQQRNLRLAwsdSALAAN-RPHEAG-IALAPLADE-KSAVIQVR 186
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKAL---KRAPSSQNAIKLH---RALLASgNTAEAVkTLEAWLKTHpNDAVLRTA 775

                         170
                  ....*....|....*.
gi 504537459  187 IAQLSLQAGDHDTAIR 202
Cdd:TIGR02917 776 LAELYLAQKDYDKAIK 791
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 50-214 1.06e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  50 AYKAIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDV 129
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459 130 ACRDFSAAVAggkwsaeqqrnlrlawsdsalaanrpheagialaplADEKSAVIQVRIAQLSLQAGDHDTAIRMAELAAS 209
Cdd:COG4783   91 ALALLEKALK------------------------------------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134


                 ....*
gi 504537459 210 DAATD 214
Cdd:COG4783  135 LDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 56-168 1.19e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   56 AGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLST-RFPNSAAVLA--QHGYLAQRQMryDVACR 132
Cdd:TIGR02917  69 LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLlDDEGAAELLAlrGLAYLGLGQL--ELAQK 146

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 504537459  133 DFSAAVaggkwsAEQQRNL--RLAWSDSALAANRPHEA 168
Cdd:TIGR02917 147 SYEQAL------AIDPRSLyaKLGLAQLALAENRFDEA 178
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 78-216 2.02e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.12  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   78 QLGLLLVdvyrREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVAGGKWSAEQQRNLrLAWSD 157
Cdd:TIGR00990 438 QLGVTQY----KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV-LPLIN 512

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504537459  158 SALAANRPHEAGIALAPLAdEKSAVIQVR-------IAQLSLQAGDHDTAIRMAELAASDAATDTE 216
Cdd:TIGR00990 513 KALALFQWKQDFIEAENLC-EKALIIDPEcdiavatMAQLLLQQGDVDEALKLFERAAELARTEGE 577
TPR_19 pfam14559
Tetratricopeptide repeat;
56-115 3.60e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 3.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   56 AGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLA 115
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 24-154 3.71e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 3.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  24 AMSLAWQPPAHAARPLVPKAFRLADGAYKAIDAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESL 103
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504537459 104 STRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVAGGKWSAEQQRNLRLA 154
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-122 4.86e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 4.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  38 PLVPKA-FRLADGAYKAidaGDLPRAEVYALRALQIQPGSEQLG---LLLVDVYRREGKVDDADALLESLSTRFPNSAAV 113
Cdd:COG1729   27 PLAPDAlYWLGEAYYAL---GDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103


                 ....*....
gi 504537459 114 LAQHGYLAQ 122
Cdd:COG1729  104 KEARARLAR 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 10-139 6.06e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 6.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  10 AGLARCARLSALALAMSLAWQPPAHAARPLVPKAFRLADGAYKAI--DAGDLPRAEVYALRALQIQPGSEQLGLLLVDVY 87
Cdd:COG5010   19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLynKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 504537459  88 RREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDFSAAVA 139
Cdd:COG5010   99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-201 8.92e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 8.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   19 SALALAMSLAWQPPAHAARPLVPKAFRLADGaykaidagDLPRAEVYALRALQIQPGSeQLGLLLVDVYRREGKVDDADA 98
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQK--------DYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVK 757

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459   99 LLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACR----------DFSAAVAGGKWSAEQQ---RNLRLAWSDSALAANRP 165
Cdd:TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKhyqtvvkkapDNAVVLNNLAWLYLELkdpRALEYAERALKLAPNIP 837

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 504537459  166 HEA---GIALAPLADEKSAV---------------IQVRIAQLSLQAGDHDTAI 201
Cdd:TIGR02917 838 AILdtlGWLLVEKGEADRALpllrkavniapeaaaIRYHLALALLATGRKAEAR 891
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 55-139 9.79e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.52  E-value: 9.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504537459  55 DAGDLPRAEVYALRALQIQPGSEQLGLLLVDVYRREGKVDDADALLESLSTRFPNSAAVLAQHGYLAQRQMRYDVACRDF 134
Cdd:COG4235   29 RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAW 108


                 ....*
gi 504537459 135 SAAVA 139
Cdd:COG4235  109 QKLLA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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