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Conserved domains on  [gi|504668352|ref|WP_014855454|]
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zinc ribbon domain-containing protein [Melioribacter roseus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 3-49 5.11e-06

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


:

Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 42.75  E-value: 5.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504668352    3 CNNCGLNNNDENKFCTNCGVKLEkaTVSCNMCGADNDSSNTYCVSCG 49
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTPLK--PDRCPNCGAPVPPNARFCPYCG 45
CcmH_N super family cl01179
N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; ...
 135-195 7.47e-06

N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; Cytochrome c-type biogenesis protein CcmH is a membrane-anchored thiol-oxidoreductase that is essential in the maturation of c-type cytochromes. CcmH consists of an N-terminal catalytic domain with the active site CXXC motif and a C-terminal domain of unknown function which is predicted to contain TPR-like repeats. Other members of this family include NrfF, CycL, and Ccl2.


The actual alignment was detected with superfamily member cd16378:

Pssm-ID: 470107  Cd Length: 67  Bit Score: 42.90  E-value: 7.47e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504668352 135 VEAKVYEIASKFVCSCgtCGEESLELCTCPRAAEERQFIREYVEKNANSSDIIMALANKYG 195
Cdd:cd16378    1 QEARARELAKELRCPV--CQNQSLADSNAPIARDLRAEIREMLAEGKSDEEILDYLVARYG 59
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 3-49 5.11e-06

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 42.75  E-value: 5.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504668352    3 CNNCGLNNNDENKFCTNCGVKLEkaTVSCNMCGADNDSSNTYCVSCG 49
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTPLK--PDRCPNCGAPVPPNARFCPYCG 45
CcmH_N cd16378
N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; ...
 135-195 7.47e-06

N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; Cytochrome c-type biogenesis protein CcmH is a membrane-anchored thiol-oxidoreductase that is essential in the maturation of c-type cytochromes. CcmH consists of an N-terminal catalytic domain with the active site CXXC motif and a C-terminal domain of unknown function which is predicted to contain TPR-like repeats. Other members of this family include NrfF, CycL, and Ccl2.


Pssm-ID: 319866  Cd Length: 67  Bit Score: 42.90  E-value: 7.47e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504668352 135 VEAKVYEIASKFVCSCgtCGEESLELCTCPRAAEERQFIREYVEKNANSSDIIMALANKYG 195
Cdd:cd16378    1 QEARARELAKELRCPV--CQNQSLADSNAPIARDLRAEIREMLAEGKSDEEILDYLVARYG 59
PRK14559 PRK14559
serine/threonine phosphatase;
1-50 1.34e-05

serine/threonine phosphatase;


Pssm-ID: 237756 [Multi-domain]  Cd Length: 645  Bit Score: 46.59  E-value: 1.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504668352   1 MICNNCGLNNNDENKFCTNCGVKL-EKatvSCNMCGADNDSSNTYCVSCGA 50
Cdd:PRK14559   2 LICPQCQFENPNNNRFCQKCGTSLtHK---PCPQCGTEVPVDEAHCPNCGA 49
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
2-76 1.22e-03

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 40.14  E-value: 1.22e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504668352   2 ICNNCGLNNNDENKFCTNCGVKLEKATVScnmcgadndssntycVSCGAKIKAAVQQGELRPKKNKRNPSKTIKG 76
Cdd:COG4640    3 FCPNCGHKLEDGVKFCPNCGTPLTSKVKQ---------------ARQAKQKQAQSAVSNTAVKKKITKKKKIIIA 62
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 3-49 5.11e-06

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 42.75  E-value: 5.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504668352    3 CNNCGLNNNDENKFCTNCGVKLEkaTVSCNMCGADNDSSNTYCVSCG 49
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTPLK--PDRCPNCGAPVPPNARFCPYCG 45
CcmH_N cd16378
N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; ...
 135-195 7.47e-06

N-terminal domain of cytochrome c-type biogenesis protein CcmH and related proteins; Cytochrome c-type biogenesis protein CcmH is a membrane-anchored thiol-oxidoreductase that is essential in the maturation of c-type cytochromes. CcmH consists of an N-terminal catalytic domain with the active site CXXC motif and a C-terminal domain of unknown function which is predicted to contain TPR-like repeats. Other members of this family include NrfF, CycL, and Ccl2.


Pssm-ID: 319866  Cd Length: 67  Bit Score: 42.90  E-value: 7.47e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504668352 135 VEAKVYEIASKFVCSCgtCGEESLELCTCPRAAEERQFIREYVEKNANSSDIIMALANKYG 195
Cdd:cd16378    1 QEARARELAKELRCPV--CQNQSLADSNAPIARDLRAEIREMLAEGKSDEEILDYLVARYG 59
PRK14559 PRK14559
serine/threonine phosphatase;
1-50 1.34e-05

serine/threonine phosphatase;


Pssm-ID: 237756 [Multi-domain]  Cd Length: 645  Bit Score: 46.59  E-value: 1.34e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504668352   1 MICNNCGLNNNDENKFCTNCGVKL-EKatvSCNMCGADNDSSNTYCVSCGA 50
Cdd:PRK14559   2 LICPQCQFENPNNNRFCQKCGTSLtHK---PCPQCGTEVPVDEAHCPNCGA 49
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
2-76 1.22e-03

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 40.14  E-value: 1.22e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504668352   2 ICNNCGLNNNDENKFCTNCGVKLEKATVScnmcgadndssntycVSCGAKIKAAVQQGELRPKKNKRNPSKTIKG 76
Cdd:COG4640    3 FCPNCGHKLEDGVKFCPNCGTPLTSKVKQ---------------ARQAKQKQAQSAVSNTAVKKKITKKKKIIIA 62
PRK07418 PRK07418
acetolactate synthase large subunit;
3-24 6.25e-03

acetolactate synthase large subunit;


Pssm-ID: 236014 [Multi-domain]  Cd Length: 616  Bit Score: 38.11  E-value: 6.25e-03
                         10        20
                 ....*....|....*....|..
gi 504668352   3 CNNCGLNNNDENKFCTNCGVKL 24
Cdd:PRK07418 595 CSNCGAKNPSTHRFCPECGTKL 616
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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