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Conserved domains on  [gi|504697772|ref|WP_014884874|]
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MULTISPECIES: OmpA family protein [Enterobacter]

Protein Classification

PRK09967 family protein( domain architecture ID 11484538)

PRK09967 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.93e-114

OmpA family protein;


:

Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 320.77  E-value: 1.93e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   1 MLKRYFAPLVLASLVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRSESETQIQSMAARLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  81 KTGLNHARMDGHTDNYGEESYNEALSLKRANAVADAWAKGANIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 504697772 161 P 161
Cdd:PRK09967 160 P 160
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.93e-114

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 320.77  E-value: 1.93e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   1 MLKRYFAPLVLASLVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRSESETQIQSMAARLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  81 KTGLNHARMDGHTDNYGEESYNEALSLKRANAVADAWAKGANIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 504697772 161 P 161
Cdd:PRK09967 160 P 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-158 5.72e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.65  E-value: 5.72e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  54 TILFDKNDARLRSESETQIQSMAARLAKTGLNHARMDGHTDNYGEESYNEALSLKRANAVADA-WAKGanIPRENLTTRG 132
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 504697772 133 LGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-161 2.63e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 116.42  E-value: 2.63e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  51 LSDTILFDKNDARLRSESETQIQSMAARLAKTGLNHARMDGHTDNYGEESYNEALSLKRANAVADAWAKgANIPRENLTT 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504697772 131 RGLGKKYPIASNSTAQGRAENRRVSVVISTP 161
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 51-158 1.65e-16

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 71.56  E-value: 1.65e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   51 LSDTILFDKNDARLRSESETQIQSMAARLAKTGLNhARMDGHTDNYGEESY----NEALSLKRANAVADAWAKGAnIPRE 126
Cdd:TIGR03350  28 LRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAG 105

                          90       100       110
                  ....*....|....*....|....*....|..
gi 504697772  127 NLTTRGLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:TIGR03350 106 RVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-151 9.60e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 68.16  E-value: 9.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   57 FDKNDARLRSESETQIQSMAARLAKTGLNHA-RMDGHTDNYGEESYNEALSLKRANAVADA-WAKGanIPRENLTTRGLG 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 504697772  135 KKYPIASNSTAQGRAEN 151
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.93e-114

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 320.77  E-value: 1.93e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   1 MLKRYFAPLVLASLVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRSESETQIQSMAARLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  81 KTGLNHARMDGHTDNYGEESYNEALSLKRANAVADAWAKGANIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 504697772 161 P 161
Cdd:PRK09967 160 P 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-158 5.72e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.65  E-value: 5.72e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  54 TILFDKNDARLRSESETQIQSMAARLAKTGLNHARMDGHTDNYGEESYNEALSLKRANAVADA-WAKGanIPRENLTTRG 132
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 504697772 133 LGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-161 2.63e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 116.42  E-value: 2.63e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  51 LSDTILFDKNDARLRSESETQIQSMAARLAKTGLNHARMDGHTDNYGEESYNEALSLKRANAVADAWAKgANIPRENLTT 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504697772 131 RGLGKKYPIASNSTAQGRAENRRVSVVISTP 161
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
42-160 4.52e-21

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 84.13  E-value: 4.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  42 ELNGDW-SLGLSDTILFDKNDARLRSESETQIQSMAARLAKTGlNHARMDGHTDN--YGEESY--NEALSLKRANAVADA 116
Cdd:COG1360   47 RITEEGlVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNvpISTARFpsNWELSAARAAAVVRY 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 504697772 117 WAKGaNIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:COG1360  126 LIEG-GVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 51-158 1.65e-16

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 71.56  E-value: 1.65e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   51 LSDTILFDKNDARLRSESETQIQSMAARLAKTGLNhARMDGHTDNYGEESY----NEALSLKRANAVADAWAKGAnIPRE 126
Cdd:TIGR03350  28 LRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAG 105

                          90       100       110
                  ....*....|....*....|....*....|..
gi 504697772  127 NLTTRGLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:TIGR03350 106 RVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-151 9.60e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 68.16  E-value: 9.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772   57 FDKNDARLRSESETQIQSMAARLAKTGLNHA-RMDGHTDNYGEESYNEALSLKRANAVADA-WAKGanIPRENLTTRGLG 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 504697772  135 KKYPIASNSTAQGRAEN 151
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
49-159 7.65e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 68.75  E-value: 7.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  49 LGLSDTILFDKNDARLRSESETQIQSMAARLA---KTGLNharMDGHTDNYGEESYNEALSLKRANAVADAW-AKGANIP 124
Cdd:PRK10510 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKeypKTAVN---VVGYTDSTGSHDLNMRLSQQRADSVASALiTQGVDAS 184

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 504697772 125 RenLTTRGLGKKYPIASNSTAQGRAENRRVSVVIS 159
Cdd:PRK10510 185 R--IRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 51-159 3.46e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 68.11  E-value: 3.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  51 LSDTILFDKNDARLRSESETQIQSMAARLAKTGlNHARMDGHTDNYGEESY----NEALSLKRANAVADAWAkGANIPRE 126
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDNVPIATAqfpsNWELSAARAASVVRLLA-DDGVAPS 208

                         90       100       110
                 ....*....|....*....|....*....|...
gi 504697772 127 NLTTRGLGKKYPIASNSTAQGRAENRRVSVVIS 159
Cdd:PRK09038 209 RLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
PRK08126 PRK08126
hypothetical protein; Provisional
 56-158 5.34e-12

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 62.40  E-value: 5.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  56 LFDKNDARLRSESETQIQSMAARLAKTGlNHARMDGHTDNY----GEESYNEALSLKRANAVADAwAKGANIPRENLTTR 131
Cdd:PRK08126 326 MFVPGQATVNPAMGPLIAKIAREIARVG-GKVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQM-LQSAGVPASRLEAV 403

                         90       100
                 ....*....|....*....|....*..
gi 504697772 132 GLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:PRK08126 404 GKGDAQPVADNRTPQGRAQNRRVEITV 430
motB PRK07734
flagellar motor protein MotB; Reviewed
 53-158 1.84e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 60.14  E-value: 1.84e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  53 DTILFDKNDARLRSESETQIQSMAARLAktgLNHAR---MDGHTDNY----GEESYNEALSLKRANAVADAWAKGANIPR 125
Cdd:PRK07734 142 DNILFDSGKADVRLEDLPLAKEISNLLV---SNPPRnitISGHTDNVpianAQFASNWELSVMRAVNFMQVLLENKELDP 218

                         90       100       110
                 ....*....|....*....|....*....|...
gi 504697772 126 ENLTTRGLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:PRK07734 219 EKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLI 251
PRK10808 PRK10808
outer membrane protein A; Reviewed
 51-156 2.25e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 57.78  E-value: 2.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  51 LSDTILFDKNDARLRSESETQIQSMAARLA----KTGlnHARMDGHTDNYGEESYNEALSLKRANAVADAW-AKGanIPR 125
Cdd:PRK10808 222 LKSDVLFNFNKATLKPEGQQALDQLYSQLSnldpKDG--SVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLvSKG--IPA 297

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 504697772 126 ENLTTRGLGKKYPIASNS--TAQGRAE-------NRRVSV 156
Cdd:PRK10808 298 DKISARGMGKSNPVTGNTcdNVKPRAAlidclapDRRVEI 337
PRK07033 PRK07033
DotU family type VI secretion system protein;
56-158 1.95e-09

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 55.06  E-value: 1.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  56 LFDKNDARLRSESETQIQSMAARLAKTGLNhARMDGHTDNYGEESY----NEALSLKRANAVADAWAKGANIPrENLTTR 131
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQP-ERVTAE 394

                         90       100
                 ....*....|....*....|....*..
gi 504697772 132 GLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:PRK07033 395 GRGDSDPVAPNDSAENRARNRRVEITL 421
PRK06925 PRK06925
flagellar motor protein MotB;
49-161 3.28e-09

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 53.61  E-value: 3.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  49 LGLSDTILFDKNDARLRSESETQIQSMAaRLAKTGLNHARMDGHTDNYGEESY----NEALSLKRANAVADAWAKGANIP 124
Cdd:PRK06925 114 LVLQEAVLFETGEADILKQAEPFLHKIG-VLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKEKLD 192

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 504697772 125 RENLTTRGLGKKYPIASNSTAQGRAENRRVSVVISTP 161
Cdd:PRK06925 193 SSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
motB PRK08944
flagellar motor protein MotB; Reviewed
 91-159 1.43e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 52.32  E-value: 1.43e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504697772  91 GHTDNYG--EESY--NEALSLKRANAVADAWAKGANIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIS 159
Cdd:PRK08944 216 GHTDNVPisSELYrsNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIE 288
motB PRK08457
flagellar motor protein MotB; Reviewed
 48-160 2.82e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 51.26  E-value: 2.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  48 SLGLSDTILFDKNDARL-RSESETQIQSMAARLAKTGLN-HARMDGHTDNY--GEESYNEA--LSLKRANAVADAWAKGa 121
Cdd:PRK08457 117 ALKLPSKLLFENGSAEIiNADMMDYLKRIAKIITKLPKQvKINVRGYTDNSplNKSRYKDHyeLAAARAYNVMKVLIQY- 195

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 504697772 122 NIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:PRK08457 196 GINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEIFFKV 234
PRK09040 PRK09040
hypothetical protein; Provisional
 49-154 7.94e-08

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 49.63  E-value: 7.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  49 LGLSDTILFDKNDARLRSESETQIQSMAARLAKTGLNHARM---DGHTDNY----GEESY--NEALSLKRANAVADAWAK 119
Cdd:PRK09040  84 IGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEIlmvSGFTDDQpvraGNRRFadNWELSAQRALTVTRALID 163

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 504697772 120 gANIPRENLTTRGLGKKYPIASNSTAQGRAENRRV 154
Cdd:PRK09040 164 -AGVPASSVFAAAFGSEQPVASNADDEGRAKNRRV 197
PRK09039 PRK09039
peptidoglycan -binding protein;
55-154 4.25e-07

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 48.04  E-value: 4.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  55 ILFDKNDARLRSESETQIQSMAA---RLAK---TGLNHA-RMDGHTDN---YGEESY--NEALSLKRANAVADAW-AKGa 121
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAaliELAKeipPEINWVlRVDGHTDNvplSGTGRFrdNWELSSARAISVVKFLiALG- 304

                         90       100       110
                 ....*....|....*....|....*....|...
gi 504697772 122 nIPRENLTTRGLGKKYPIASNSTAQGRAENRRV 154
Cdd:PRK09039 305 -VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK06667
flagellar motor protein MotB; Validated
 88-160 3.73e-06

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 45.17  E-value: 3.73e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504697772  88 RMDGHTDNY-----GEESYNEALSLKRANAVADAWAKGANIPRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVIST 160
Cdd:PRK06667 163 RIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILT 240
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 48-158 2.11e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 42.74  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  48 SLGLSDTILFDKNDARLRSESETQIQSMAArLAKTGLNHARMDGHTDN--YGEESY--NEALSLKRANAVADAWAKGANI 123
Cdd:PRK06742 110 SVVIVDNLIFDTGDANVKPEAKEIISQLVG-FFQSVPNPIVVEGHTDSrpIHNDKFpsNWELSSARAANMIHHLIEVYNV 188

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 504697772 124 PRENLTTRGLGKKYPIASNSTAQGRAENRRVSVVI 158
Cdd:PRK06742 189 DDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK07034 PRK07034
hypothetical protein; Provisional
 29-157 4.20e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 42.47  E-value: 4.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  29 PEQIAAMKSYGFNELNGD---WSLGLSDTILFDKNDARLRSE--SETQIQSMAARLAKTGlNHARMDGHTDNYGEESY-- 101
Cdd:PRK07034 367 PNPLSNILNEGWLEVRKDprgWLLIFTSDGAFRTGEATLSEEfiNKKNIERLGLALAPWP-GDIEVIGHTDNKPFRSTsg 445

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504697772 102 --NEALSLKRANAVADAWAKGANIP---RENLTTRGLGKKYPIASNSTAQGRAENRRVSVV 157
Cdd:PRK07034 446 nnNLKLSAARASVVADKLRESTQINethQREISAIGRGESDPLADNATEEGRKRNRRVDIL 506
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
57-157 4.04e-04

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 38.70  E-value: 4.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504697772  57 FDKNDarLRSESETQIQSMAARLAKTGLNHARMDGHTDNYGEESYNEALSLKRANAVaDAWAKGANIPRENLTTRGLGKK 136
Cdd:PRK10802  75 LDKYD--IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAV-KMYLQGKGVSADQISIVSYGKE 151

                         90       100
                 ....*....|....*....|.
gi 504697772 137 YPIASNSTAQGRAENRRVSVV 157
Cdd:PRK10802 152 KPAVLGHDEAAYAKNRRAVLV 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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