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Conserved domains on  [gi|504698071|ref|WP_014885173|]
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MULTISPECIES: recombinase-like helix-turn-helix domain-containing protein [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_62 pfam20552
Recombinase-like helix-turn-helix domain; This family of proteins is functionally ...
 40-102 3.12e-22

Recombinase-like helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 73 and 103 amino acids in length. This family of proteins show similarity to the HTH domain of recombinases pfam07508.


:

Pssm-ID: 466701  Cd Length: 72  Bit Score: 82.22  E-value: 3.12e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504698071   40 QTRSREPENWEMNLIATLEDLFEQGVETLPELVNGLNAVRMHDQQGEPWSDASFQAFLQVNGY 102
Cdd:pfam20552  10 QTRSREPTAYEDLLGDALERAFAAGAHELPDLVAGLNAAGPRSPDGQPWTEESFRAEMARLGA 72
 
Name Accession Description Interval E-value
HTH_62 pfam20552
Recombinase-like helix-turn-helix domain; This family of proteins is functionally ...
 40-102 3.12e-22

Recombinase-like helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 73 and 103 amino acids in length. This family of proteins show similarity to the HTH domain of recombinases pfam07508.


Pssm-ID: 466701  Cd Length: 72  Bit Score: 82.22  E-value: 3.12e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504698071   40 QTRSREPENWEMNLIATLEDLFEQGVETLPELVNGLNAVRMHDQQGEPWSDASFQAFLQVNGY 102
Cdd:pfam20552  10 QTRSREPTAYEDLLGDALERAFAAGAHELPDLVAGLNAAGPRSPDGQPWTEESFRAEMARLGA 72
 
Name Accession Description Interval E-value
HTH_62 pfam20552
Recombinase-like helix-turn-helix domain; This family of proteins is functionally ...
 40-102 3.12e-22

Recombinase-like helix-turn-helix domain; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 73 and 103 amino acids in length. This family of proteins show similarity to the HTH domain of recombinases pfam07508.


Pssm-ID: 466701  Cd Length: 72  Bit Score: 82.22  E-value: 3.12e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504698071   40 QTRSREPENWEMNLIATLEDLFEQGVETLPELVNGLNAVRMHDQQGEPWSDASFQAFLQVNGY 102
Cdd:pfam20552  10 QTRSREPTAYEDLLGDALERAFAAGAHELPDLVAGLNAAGPRSPDGQPWTEESFRAEMARLGA 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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