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Conserved domains on  [gi|504708111|ref|WP_014895213|]
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MULTISPECIES: flagellar type III secretion system protein FlhB [Bacillus]

Protein Classification

flagellar type III secretion system protein FlhB( domain architecture ID 10012530)

flagellar type III secretion system protein FlhB may be involved in the export of flagellum proteins; belongs to the EscU/YscU/HrcU family of type III secretion system proteins

Gene Symbol:  flhB
Gene Ontology:  GO:0009306|GO:0044780|GO:0016020
PubMed:  32157081|26244937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-344 1.59e-137

flagellar type III secretion system protein FlhB;


:

Pssm-ID: 235569  Cd Length: 359  Bit Score: 394.91  E-value: 1.59e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK----NTDSTEYFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREiifdPNDVLSLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  77 LMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVL 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 157 FKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*...
gi 504708111 317 YQVEEDETIPEDLYVAVIEVMRYLIQTN 344
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLK 351
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-344 1.59e-137

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 394.91  E-value: 1.59e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK----NTDSTEYFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREiifdPNDVLSLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  77 LMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVL 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 157 FKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*...
gi 504708111 317 YQVEEDETIPEDLYVAVIEVMRYLIQTN 344
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 5-340 1.10e-129

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 374.08  E-value: 1.10e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111    5 NKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGKNT--DSTEYFYLMGMLL 82
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAADpaALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   83 LKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLE 162
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  163 KIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMH 242
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  243 AILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEED 322
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 504708111  323 ETIPEDLYVAVIEVMRYL 340
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-342 1.23e-129

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 374.45  E-value: 1.23e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MA---KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK----NTDSTE 73
Cdd:COG1377    1 MAeedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARAlaldPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  74 YFYLMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVA 153
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 154 YVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQV 233
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLAR 313
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340
                 ....*....|....*....|....*....
gi 504708111 314 SLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQ 349
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-344 5.92e-97

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 291.09  E-value: 5.92e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111    6 KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN-SVAVLFNQIGKNTDSTEYFYLMGMLLLK 84
Cdd:TIGR00328   2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlMSFFLSFETSDILNLGSLVGIFFQSIRE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   85 VS---APILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNL 161
Cdd:TIGR00328  82 VLlllLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  162 EKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFM 241
Cdd:TIGR00328 162 GELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQ 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  242 HAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEE 321
Cdd:TIGR00328 242 REAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEI 321

                         330       340
                  ....*....|....*....|...
gi 504708111  322 DETIPEDLYVAVIEVMRYLIQTN 344
Cdd:TIGR00328 322 GQEIPPELYKAVAEVLAYVYKLK 344
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-344 1.59e-137

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 394.91  E-value: 1.59e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK----NTDSTEYFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREiifdPNDVLSLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  77 LMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVL 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 157 FKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*...
gi 504708111 317 YQVEEDETIPEDLYVAVIEVMRYLIQTN 344
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 5-340 1.10e-129

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 374.08  E-value: 1.10e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111    5 NKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGKNT--DSTEYFYLMGMLL 82
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAADpaALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   83 LKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLE 162
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  163 KIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMH 242
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  243 AILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEED 322
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 504708111  323 ETIPEDLYVAVIEVMRYL 340
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-342 1.23e-129

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 374.45  E-value: 1.23e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MA---KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK----NTDSTE 73
Cdd:COG1377    1 MAeedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARAlaldPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  74 YFYLMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVA 153
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 154 YVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQV 233
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLAR 313
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340
                 ....*....|....*....|....*....
gi 504708111 314 SLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQ 349
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-344 5.92e-97

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 291.09  E-value: 5.92e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111    6 KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN-SVAVLFNQIGKNTDSTEYFYLMGMLLLK 84
Cdd:TIGR00328   2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlMSFFLSFETSDILNLGSLVGIFFQSIRE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   85 VS---APILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNL 161
Cdd:TIGR00328  82 VLlllLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  162 EKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFM 241
Cdd:TIGR00328 162 GELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQ 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  242 HAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEE 321
Cdd:TIGR00328 242 REAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEI 321

                         330       340
                  ....*....|....*....|...
gi 504708111  322 DETIPEDLYVAVIEVMRYLIQTN 344
Cdd:TIGR00328 322 GQEIPPELYKAVAEVLAYVYKLK 344
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 4-342 1.35e-83

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 256.82  E-value: 1.35e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111    4 DNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGKNTDSTEYFYLMG--ML 81
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQPFAYALAQVLSGllQL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   82 LLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNL 161
Cdd:TIGR01404  81 ILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  162 EKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFM 241
Cdd:TIGR01404 161 KELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELH 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  242 HAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEE 321
Cdd:TIGR01404 241 QEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTARV 320

                         330       340
                  ....*....|....*....|.
gi 504708111  322 DETIPEDLYVAVIEVMRYLIQ 342
Cdd:TIGR01404 321 GQYIPEELFEAVAELLRWLEQ 341
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 6-342 1.71e-79

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 246.35  E-value: 1.71e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   6 KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDwlgfEIANSVAVLFNQIGK--NTDSTEYFYLM----G 79
Cdd:COG4792    5 KTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGD----ALVEHLQALILLPAQllNLPFDEALNQLlgalL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  80 MLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKK 159
Cdd:COG4792   81 ELLLRLVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYYLLRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 160 NLEKIVS--MIGFN-WTASLTEIIRQIkfiFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:COG4792  161 YLPTLVYlpYCGLAcAGPVVGALLKWL---WGVLLGAYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQK 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:COG4792  238 RRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALY 317

                        330       340
                 ....*....|....*....|....*.
gi 504708111 317 YQVEEDETIPEDLYVAVIEVMRYLIQ 342
Cdd:COG4792  318 ADAGLGEYIPEDLFEPVAEVLRLALL 343
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
1-337 3.22e-76

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 245.74  E-value: 3.22e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFN-QIGKNTDSTEYFYLMG 79
Cdd:PRK12772 260 FASDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLNnYLNMNLNYNSLNSLAI 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  80 MLLLKVSA---PILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVL 156
Cdd:PRK12772 340 ITLLRVAKiflPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKF 419

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 157 FKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK12772 420 LQDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAK 499

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK12772 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIY 579

                        330       340
                 ....*....|....*....|.
gi 504708111 317 YQVEEDETIPEDLYVAVIEVM 337
Cdd:PRK12772 580 KKVEIDQEIPQDMYQAVAEIL 600
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
6-341 1.09e-68

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 218.77  E-value: 1.09e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   6 KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGK--NTDSTEYFYLMGMLLL 83
Cdd:PRK12721   4 KTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINSTIQLLNKpfLYALTQILGAVLEVLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  84 KVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEK 163
Cdd:PRK12721  84 RFLLVLGAGLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHYYAPS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 164 IVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHA 243
Cdd:PRK12721 164 FAYLPYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSE 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 244 ILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEEDE 323
Cdd:PRK12721 244 IQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALFKEVECGD 323

                        330
                 ....*....|....*...
gi 504708111 324 TIPEDLYVAVIEVMRYLI 341
Cdd:PRK12721 324 YIPETLFEPVAALLRMVM 341
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 3-340 4.48e-57

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 189.24  E-value: 4.48e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   3 KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQ-----IGKNTDSTEYFYL 77
Cdd:PRK13109   7 KESKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGQAAQLTGDLAPLLDDprgfsLETGADAMLLLSR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  78 MGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLF 157
Cdd:PRK13109  87 VALAAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLLLL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 158 KKNLEKIVSMIgFNWTASLTEIIRQIKFIFLAIL-IILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK13109 167 RSERAKAVNAM-FVDPSQLPELILTVAIRLVSAVaIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKAR 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 rknfMHAILQGTIAKKM----DGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLA 312
Cdd:PRK13109 246 ----LRSLAQDRARNRMlanvPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLA 321

                        330       340
                 ....*....|....*....|....*...
gi 504708111 313 RSLYYQVEEDETIPEDLYVAVIEVMRYL 340
Cdd:PRK13109 322 RSLYDAVQVDQVIPAEFYRPVAQILYFL 349
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 1-342 3.60e-56

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 187.55  E-value: 3.60e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAKDN---KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFN-QIGKNTDSTEYFY 76
Cdd:PRK12468   1 MAEDSdqeKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHfDHSMVSNDKQMLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  77 LMGMLL---LKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVA 153
Cdd:PRK12468  81 QIGMLLrqtLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 154 YVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQV 233
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLAR 313
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320

                        330       340
                 ....*....|....*....|....*....
gi 504708111 314 SLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349
PRK06298 PRK06298
type III secretion system protein; Validated
 6-344 4.07e-55

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 183.90  E-value: 4.07e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   6 KTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGKNTDS---TEYFYLMGMLL 82
Cdd:PRK06298   4 KTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIFKTAPTNHDPvvtVYYLKNCLILI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  83 LKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLE 162
Cdd:PRK06298  84 LTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLKNRVP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 163 KIVSmigfnwTASLTEIIRQIKFIFLAILIILI------VLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK06298 164 LIIE------TAGVPPLVTAQIFKEILYKAVTSigifflVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGR 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK06298 238 RRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLL 317

                        330       340
                 ....*....|....*....|....*...
gi 504708111 317 YQVEEDETIPEDLYVAVIEVMRYLIQTN 344
Cdd:PRK06298 318 DEGKELKFIPESTYEAIGEILLYITSLN 345
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-347 9.53e-48

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 164.80  E-value: 9.53e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   1 MAkdNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWlgfeiaNSVAVLFNQIGKNTDS---TEYFYL 77
Cdd:PRK08156   1 MA--NKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSF------SEFMSIYKRILADNFDiniGDYFLA 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  78 MGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLF 157
Cdd:PRK08156  73 VMIIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFW 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 158 KKNLeKIVSMIGFNWTASLTEIIRQIKFIFLAI-LIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236
Cdd:PRK08156 153 KNYK-KEIFSQLNGNIVGLIVIWRELLVKLVLTfLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSK 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLY 316
Cdd:PRK08156 232 RREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLY 311

                        330       340       350
                 ....*....|....*....|....*....|..
gi 504708111 317 YQVEEDETIP-EDLyvavIEVMRYLIQTNELE 347
Cdd:PRK08156 312 KTHRRYSFVSlEDL----DEVLRLLIWLEQVE 339
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 4-340 1.62e-42

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 155.99  E-value: 1.62e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111   4 DNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVLFNQIGKNTDS-----TEYFYLM 78
Cdd:PRK12773 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMssesvTELLKNA 377

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111  79 GMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPkNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFK 158
Cdd:PRK12773 378 STDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIIS 456

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 159 KNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRK 238
Cdd:PRK12773 457 KDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRR 536

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504708111 239 NFMHAIL-QGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYY 317
Cdd:PRK12773 537 QLARDMMnKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYE 616

                        330       340
                 ....*....|....*....|...
gi 504708111 318 QVEEDETIPEDLYVAVIEVMRYL 340
Cdd:PRK12773 617 EVELGAEVPQQFYRAIATILSRL 639
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 268-345 6.14e-20

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 83.31  E-value: 6.14e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504708111 268 VVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLyYQVEEDETIPEDLYVAVIEVMRYLIQTNE 345
Cdd:COG2257   12 VALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELL-SQLDLGDEIPPELYQAVAEILAFIYRLDG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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