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Conserved domains on  [gi|504754888|ref|WP_014941990|]
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MULTISPECIES: FAD-dependent oxidoreductase [Mycobacterium avium complex (MAC)]

Protein Classification

FAD-dependent oxidoreductase( domain architecture ID 12015107)

FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to D-amino acid oxidase

CATH:  3.40.50.720|3.30.9.10
EC:  1.-.-.-
Gene Ontology:  GO:0071949|GO:0016491
PubMed:  30945211|31869345|25704928
SCOP:  3000055

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 7-316 1.06e-32

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


:

Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 123.66  E-value: 1.06e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888    7 IVVVGAGVSGLTSAICLAEAGWPVRVW-ADTMPKRTTSAVAGAVWAPPRPAERAGATLRWTEHSLEVFRDLARD------ 79
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARRGLSVTLLeRGDDPGSGASGRNAGLIHPGLRYLEPSELARLALEALDLWEELEEElgidcg 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   80 -PDSGVLLAPALAVGELTATEAMSSAAALIPD--LRPADPADVPPGFGTGFRATV----PMIDMPHYLDYLTLRLAAAGC 152
Cdd:pfam01266  82 fRRCGVLVLARDEEEEALEKLLAALRRLGVPAelLDAEELRELEPLLPGLRGGLFypdgGHVDPARLLRALARAAEALGV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  153 EIEEH-PVRSLAEAAD--------TADIVVNCTGLAAGALI---DDHTVRPLFGQHVVL--TNPGLQQLFLELNDGPEWT 218
Cdd:pfam01266 162 RIIEGtEVTGIEEEGGvwgvvttgEADAVVNAAGAWADLLAlpgLRLPVRPVRGQVLVLepLPEALLILPVPITVDPGRG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  219 CFF--PHPQRVVCGGISIPGRWDT-TAEPDVTERILQRCRRIEPRLGDaeVIEVITGLRPDRPSVRVEAEPLGRaRCIHN 295
Cdd:pfam01266 242 VYLrpRADGRLLLGGTDEEDGFDDpTPDPEEIEELLEAARRLFPALAD--IERAWAGLRPLPDGLPIIGRPGSP-GLYLA 318

                         330       340
                  ....*....|....*....|.
gi 504754888  296 YGHSSNGVTLSWGCARDVVAL 316
Cdd:pfam01266 319 TGHGGHGLTLAPGIGKLLAEL 339
 
Name Accession Description Interval E-value
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 7-316 1.06e-32

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 123.66  E-value: 1.06e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888    7 IVVVGAGVSGLTSAICLAEAGWPVRVW-ADTMPKRTTSAVAGAVWAPPRPAERAGATLRWTEHSLEVFRDLARD------ 79
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARRGLSVTLLeRGDDPGSGASGRNAGLIHPGLRYLEPSELARLALEALDLWEELEEElgidcg 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   80 -PDSGVLLAPALAVGELTATEAMSSAAALIPD--LRPADPADVPPGFGTGFRATV----PMIDMPHYLDYLTLRLAAAGC 152
Cdd:pfam01266  82 fRRCGVLVLARDEEEEALEKLLAALRRLGVPAelLDAEELRELEPLLPGLRGGLFypdgGHVDPARLLRALARAAEALGV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  153 EIEEH-PVRSLAEAAD--------TADIVVNCTGLAAGALI---DDHTVRPLFGQHVVL--TNPGLQQLFLELNDGPEWT 218
Cdd:pfam01266 162 RIIEGtEVTGIEEEGGvwgvvttgEADAVVNAAGAWADLLAlpgLRLPVRPVRGQVLVLepLPEALLILPVPITVDPGRG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  219 CFF--PHPQRVVCGGISIPGRWDT-TAEPDVTERILQRCRRIEPRLGDaeVIEVITGLRPDRPSVRVEAEPLGRaRCIHN 295
Cdd:pfam01266 242 VYLrpRADGRLLLGGTDEEDGFDDpTPDPEEIEELLEAARRLFPALAD--IERAWAGLRPLPDGLPIIGRPGSP-GLYLA 318

                         330       340
                  ....*....|....*....|.
gi 504754888  296 YGHSSNGVTLSWGCARDVVAL 316
Cdd:pfam01266 319 TGHGGHGLTLAPGIGKLLAEL 339
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
7-320 1.42e-24

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 101.91  E-value: 1.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   7 IVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRTTSAVAGAVWAPPRPAERAGATLRWTEHSLEVFRDLARDPD----- 81
Cdd:COG0665    5 VVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRALVRLAREALDLWRELAAELGidcdf 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  82 --SGVLLAPALAVGELTATEAMSSAAALIPDLRPADPADVP---PGFGTG------FRATVPMIDMPHYLDYLTLRLAAA 150
Cdd:COG0665   85 rrTGVLYLARTEAELAALRAEAEALRALGLPVELLDAAELRerePGLGSPdyagglYDPDDGHVDPAKLVRALARAARAA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888 151 GCEIEEH-PVRSLAEAAD------------TADIVVNCTGLAAGALID----DHTVRPLFGQHVVLTNPGLQQLFLELND 213
Cdd:COG0665  165 GVRIREGtPVTGLEREGGrvtgvrtergtvRADAVVLAAGAWSARLLPmlglRLPLRPVRGYVLVTEPLPDLPLRPVLDD 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888 214 GPEWtcFFPHP-QRVVCGGISIPGRWDTTAEPDVTERILQRCRRIEPRLGDAEVIEVITGLR---PDR-PSVRveaEPLG 288
Cdd:COG0665  245 TGVY--LRPTAdGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGLRpmtPDGlPIIG---RLPG 319

                        330       340       350
                 ....*....|....*....|....*....|..
gi 504754888 289 RARCIHNYGHSSNGVTLSWGCARDVVALAGGR 320
Cdd:COG0665  320 APGLYVATGHGGHGVTLAPAAGRLLADLILGG 351
thiamin_ThiO TIGR02352
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ...
 23-316 1.29e-09

glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 274092 [Multi-domain]  Cd Length: 337  Bit Score: 58.53  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   23 LAEAGWPVRVW-ADTMPKRTTSAVAG--AVWAPPRPAEraGATLRWTEHSLEVFRDLARDPDSGVLLAPA--------LA 91
Cdd:TIGR02352   3 LAKRGHSVTLFdRDPMGGGASWAAAGmlAPHAECEYAE--DPLFDLALESLRLYPEWLEALKELTGLDTGyhqcgtlvVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   92 VGELTATEAMSSAAA-------LIP----DLRPADPADVPPGFGTGFRATVPMIDMPHYLDYLTLRLAAAGCEIEEH-PV 159
Cdd:TIGR02352  81 FDEDDVEHLRQLADLqsatgmeVEWlsgrALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHtEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  160 RSLAEAAD------------TADIVVNCTGLAAGALIDDhTVRPLFGQHVVLTNPGlqqlflELNDGPEWTCFFPHPQ-- 225
Cdd:TIGR02352 161 QHIEIRGEkvtaivtpsgdvQADQVVLAAGAWAGELLPL-PLRPVRGQPLRLEAPA------VPLLNRPLRAVVYGRRvy 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  226 -------RVVCGGISIPGRWDTTAEPDVTERILQRCRRIEPRLGDAEVIEVITGLRPDRPSvrvEAEPLGRARC----IH 294
Cdd:TIGR02352 234 ivprrdgRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPD---NLPYIGEHPEdrrlLI 310

                         330       340
                  ....*....|....*....|..
gi 504754888  295 NYGHSSNGVTLSWGCARDVVAL 316
Cdd:TIGR02352 311 ATGHYRNGILLAPATAEVIADL 332
sdhA PRK08641
succinate dehydrogenase flavoprotein subunit; Reviewed
 6-49 1.22e-03

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 236319 [Multi-domain]  Cd Length: 589  Bit Score: 40.34  E-value: 1.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 504754888   6 QIVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRTTSAVA-----GAV 49
Cdd:PRK08641   5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAqgginGAV 53
 
Name Accession Description Interval E-value
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 7-316 1.06e-32

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 123.66  E-value: 1.06e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888    7 IVVVGAGVSGLTSAICLAEAGWPVRVW-ADTMPKRTTSAVAGAVWAPPRPAERAGATLRWTEHSLEVFRDLARD------ 79
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARRGLSVTLLeRGDDPGSGASGRNAGLIHPGLRYLEPSELARLALEALDLWEELEEElgidcg 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   80 -PDSGVLLAPALAVGELTATEAMSSAAALIPD--LRPADPADVPPGFGTGFRATV----PMIDMPHYLDYLTLRLAAAGC 152
Cdd:pfam01266  82 fRRCGVLVLARDEEEEALEKLLAALRRLGVPAelLDAEELRELEPLLPGLRGGLFypdgGHVDPARLLRALARAAEALGV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  153 EIEEH-PVRSLAEAAD--------TADIVVNCTGLAAGALI---DDHTVRPLFGQHVVL--TNPGLQQLFLELNDGPEWT 218
Cdd:pfam01266 162 RIIEGtEVTGIEEEGGvwgvvttgEADAVVNAAGAWADLLAlpgLRLPVRPVRGQVLVLepLPEALLILPVPITVDPGRG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  219 CFF--PHPQRVVCGGISIPGRWDT-TAEPDVTERILQRCRRIEPRLGDaeVIEVITGLRPDRPSVRVEAEPLGRaRCIHN 295
Cdd:pfam01266 242 VYLrpRADGRLLLGGTDEEDGFDDpTPDPEEIEELLEAARRLFPALAD--IERAWAGLRPLPDGLPIIGRPGSP-GLYLA 318

                         330       340
                  ....*....|....*....|.
gi 504754888  296 YGHSSNGVTLSWGCARDVVAL 316
Cdd:pfam01266 319 TGHGGHGLTLAPGIGKLLAEL 339
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
7-320 1.42e-24

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 101.91  E-value: 1.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   7 IVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRTTSAVAGAVWAPPRPAERAGATLRWTEHSLEVFRDLARDPD----- 81
Cdd:COG0665    5 VVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRALVRLAREALDLWRELAAELGidcdf 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  82 --SGVLLAPALAVGELTATEAMSSAAALIPDLRPADPADVP---PGFGTG------FRATVPMIDMPHYLDYLTLRLAAA 150
Cdd:COG0665   85 rrTGVLYLARTEAELAALRAEAEALRALGLPVELLDAAELRerePGLGSPdyagglYDPDDGHVDPAKLVRALARAARAA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888 151 GCEIEEH-PVRSLAEAAD------------TADIVVNCTGLAAGALID----DHTVRPLFGQHVVLTNPGLQQLFLELND 213
Cdd:COG0665  165 GVRIREGtPVTGLEREGGrvtgvrtergtvRADAVVLAAGAWSARLLPmlglRLPLRPVRGYVLVTEPLPDLPLRPVLDD 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888 214 GPEWtcFFPHP-QRVVCGGISIPGRWDTTAEPDVTERILQRCRRIEPRLGDAEVIEVITGLR---PDR-PSVRveaEPLG 288
Cdd:COG0665  245 TGVY--LRPTAdGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGLRpmtPDGlPIIG---RLPG 319

                        330       340       350
                 ....*....|....*....|....*....|..
gi 504754888 289 RARCIHNYGHSSNGVTLSWGCARDVVALAGGR 320
Cdd:COG0665  320 APGLYVATGHGGHGVTLAPAAGRLLADLILGG 351
thiamin_ThiO TIGR02352
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ...
 23-316 1.29e-09

glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]


Pssm-ID: 274092 [Multi-domain]  Cd Length: 337  Bit Score: 58.53  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   23 LAEAGWPVRVW-ADTMPKRTTSAVAG--AVWAPPRPAEraGATLRWTEHSLEVFRDLARDPDSGVLLAPA--------LA 91
Cdd:TIGR02352   3 LAKRGHSVTLFdRDPMGGGASWAAAGmlAPHAECEYAE--DPLFDLALESLRLYPEWLEALKELTGLDTGyhqcgtlvVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   92 VGELTATEAMSSAAA-------LIP----DLRPADPADVPPGFGTGFRATVPMIDMPHYLDYLTLRLAAAGCEIEEH-PV 159
Cdd:TIGR02352  81 FDEDDVEHLRQLADLqsatgmeVEWlsgrALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHtEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  160 RSLAEAAD------------TADIVVNCTGLAAGALIDDhTVRPLFGQHVVLTNPGlqqlflELNDGPEWTCFFPHPQ-- 225
Cdd:TIGR02352 161 QHIEIRGEkvtaivtpsgdvQADQVVLAAGAWAGELLPL-PLRPVRGQPLRLEAPA------VPLLNRPLRAVVYGRRvy 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  226 -------RVVCGGISIPGRWDTTAEPDVTERILQRCRRIEPRLGDAEVIEVITGLRPDRPSvrvEAEPLGRARC----IH 294
Cdd:TIGR02352 234 ivprrdgRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPD---NLPYIGEHPEdrrlLI 310

                         330       340
                  ....*....|....*....|..
gi 504754888  295 NYGHSSNGVTLSWGCARDVVAL 316
Cdd:TIGR02352 311 ATGHYRNGILLAPATAEVIADL 332
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 3-32 1.22e-04

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 43.30  E-value: 1.22e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 504754888   3 STHQIVVVGAGVSGLTSAICLAEAGWPVRV 32
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAGYRVTV 31
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 7-202 4.77e-04

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 41.50  E-value: 4.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888    7 IVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRTTSAVA-GAVWAPPRP------------------------------ 55
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAWSsGGIDALGNPpqggidspelhptdtlkgldeladhpyvea 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888   56 -AERAGATLRWTEHsleVFRDLARDPDSGVLLAPalaVGELTATeamssaaalipDLRPADPADVPPGFGTGFRATVPMI 134
Cdd:pfam00890  82 fVEAAPEAVDWLEA---LGVPFSRTEDGHLDLRP---LGGLSAT-----------WRTPHDAADRRRGLGTGHALLARLL 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504754888  135 DmphyldyltlRLAAAGCEI-EEHPVRSLAEAAD--TADIVVNCTG-------------LAAGALIDDHTVRPLFGQHVV 198
Cdd:pfam00890 145 E----------GLRKAGVDFqPRTAADDLIVEDGrvTGAVVENRRNgrevriraiaavlLATGGFGRLAELLLPAAGYAD 214


                  ....
gi 504754888  199 LTNP 202
Cdd:pfam00890 215 TTNP 218
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
1-30 5.49e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 41.38  E-value: 5.49e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 504754888   1 MASTHQIVVVGAGVSGLTSAICLAEAGWPV 30
Cdd:COG1148  137 VPVNKRALVIGGGIAGMTAALELAEQGYEV 166
sdhA PRK08641
succinate dehydrogenase flavoprotein subunit; Reviewed
 6-49 1.22e-03

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 236319 [Multi-domain]  Cd Length: 589  Bit Score: 40.34  E-value: 1.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 504754888   6 QIVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRTTSAVA-----GAV 49
Cdd:PRK08641   5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAqgginGAV 53
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 1-32 1.70e-03

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 39.85  E-value: 1.70e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 504754888   1 MASTHQIVVVGAGVSGLTSAICLAEAGWPVRV 32
Cdd:COG2072    3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVV 34
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 2-32 1.74e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 39.54  E-value: 1.74e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 504754888   2 ASTHQIVVVGAGVSGLTSAICLAEAGWPVRV 32
Cdd:COG0654    1 MMRTDVLIVGGGPAGLALALALARAGIRVTV 31
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 7-32 2.12e-03

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 39.57  E-value: 2.12e-03
                          10        20
                  ....*....|....*....|....*.
gi 504754888    7 IVVVGAGVSGLTSAICLAEAGWPVRV 32
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTV 26
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 4-59 2.44e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 39.43  E-value: 2.44e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 504754888   4 THQIVVVGAGVSGLTSAICLAEAGWPVRVwADTMPKR--TTSAVAGAVWAPPRPAERA 59
Cdd:COG1053    3 EYDVVVVGSGGAGLRAALEAAEAGLKVLV-LEKVPPRggHTAAAQGGINAAGTNVQKA 59
PRK06753 PRK06753
hypothetical protein; Provisional
 7-48 3.10e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 38.90  E-value: 3.10e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 504754888   7 IVVVGAGVSGLTSAICLAEAGWPVRVWAdtmpKRTTSAVAGA 48
Cdd:PRK06753   3 IAIIGAGIGGLTAAALLQEQGHEVKVFE----KNESVKEVGA 40
PRK07233 PRK07233
hypothetical protein; Provisional
 7-33 3.47e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 38.71  E-value: 3.47e-03
                         10        20
                 ....*....|....*....|....*..
gi 504754888   7 IVVVGAGVSGLTSAICLAEAGWPVRVW 33
Cdd:PRK07233   2 IAIVGGGIAGLAAAYRLAKRGHEVTVF 28
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
 7-75 3.69e-03

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 38.91  E-value: 3.69e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504754888   7 IVVVGAGVSGLTSAICLAEAGWPVRVWADTMPKRttsavagavwAPPRPAERAGATLRWTEHSLEVFRD 75
Cdd:COG0771    7 VLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPE----------LAAAELEAPGVEVVLGEHPEELLDG 65
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 1-32 3.88e-03

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 38.68  E-value: 3.88e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 504754888   1 MASTHqIVVVGAGVSGLTSAICLAEAGWPVRV 32
Cdd:COG3349    1 MMPPR-VVVVGGGLAGLAAAVELAEAGFRVTL 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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