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Conserved domains on  [gi|504812898|ref|WP_015000000|]
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MULTISPECIES: TIGR03643 family protein [Alteromonas]

Protein Classification

TIGR03643 family protein( domain architecture ID 10567151)

TIGR03643 family protein is a DUF2805 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2805 pfam10985
Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown ...
 9-79 6.00e-39

Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown function.


:

Pssm-ID: 463199  Cd Length: 71  Bit Score: 123.48  E-value: 6.00e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504812898   9 SRIIEMAWEDRTPFEAIERLYGLPEKDVIKLMRKNLKQKTFKNWRERVSGRKTKHASLRPEGVDRGYCPSQ 79
Cdd:pfam10985  1 DRIIEMAWEDRTPFEAIEEQFGLSEKEVIKLMRKELKPSSFKLWRKRVSGRKTKHLKKRSDDIGRFKCKRQ 71
 
Name Accession Description Interval E-value
DUF2805 pfam10985
Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown ...
 9-79 6.00e-39

Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown function.


Pssm-ID: 463199  Cd Length: 71  Bit Score: 123.48  E-value: 6.00e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504812898   9 SRIIEMAWEDRTPFEAIERLYGLPEKDVIKLMRKNLKQKTFKNWRERVSGRKTKHASLRPEGVDRGYCPSQ 79
Cdd:pfam10985  1 DRIIEMAWEDRTPFEAIEEQFGLSEKEVIKLMRKELKPSSFKLWRKRVSGRKTKHLKKRSDDIGRFKCKRQ 71
TIGR03643 TIGR03643
TIGR03643 family protein; This model describes an uncharacterized bacterial protein family. ...
 9-78 1.63e-35

TIGR03643 family protein; This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies. [Hypothetical proteins, Conserved]


Pssm-ID: 132682  Cd Length: 72  Bit Score: 115.17  E-value: 1.63e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504812898   9 SRIIEMAWEDRTPFEAIERLYGLPEKDVIKLMRKNLKQKTFKNWRERVSGRKTKHASLRPEGVDRGYCPS 78
Cdd:TIGR03643  3 DRIIEMAWEDRTPFEAIEQQFGLSEKEVIKLMRQNLKPSSFKLWRKRVSGRKTKHAKRRDSERTRFKCKR 72
 
Name Accession Description Interval E-value
DUF2805 pfam10985
Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown ...
 9-79 6.00e-39

Protein of unknown function (DUF2805); This is a bacterial family of proteins with unknown function.


Pssm-ID: 463199  Cd Length: 71  Bit Score: 123.48  E-value: 6.00e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504812898   9 SRIIEMAWEDRTPFEAIERLYGLPEKDVIKLMRKNLKQKTFKNWRERVSGRKTKHASLRPEGVDRGYCPSQ 79
Cdd:pfam10985  1 DRIIEMAWEDRTPFEAIEEQFGLSEKEVIKLMRKELKPSSFKLWRKRVSGRKTKHLKKRSDDIGRFKCKRQ 71
TIGR03643 TIGR03643
TIGR03643 family protein; This model describes an uncharacterized bacterial protein family. ...
 9-78 1.63e-35

TIGR03643 family protein; This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies. [Hypothetical proteins, Conserved]


Pssm-ID: 132682  Cd Length: 72  Bit Score: 115.17  E-value: 1.63e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504812898   9 SRIIEMAWEDRTPFEAIERLYGLPEKDVIKLMRKNLKQKTFKNWRERVSGRKTKHASLRPEGVDRGYCPS 78
Cdd:TIGR03643  3 DRIIEMAWEDRTPFEAIEQQFGLSEKEVIKLMRQNLKPSSFKLWRKRVSGRKTKHAKRRDSERTRFKCKR 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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