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Conserved domains on  [gi|504853946|ref|WP_015041048|]
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type II CAAX prenyl endopeptidase Rce1 family protein [Bordetella bronchiseptica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdiL super family cl47285
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 169-249 4.45e-03

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1266:

Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 35.54  E-value: 4.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504853946 169 TSWRRYYSYRFGLVfhLVALTFAAVHLNNFslsqtpvwllpLLVLPQWATGLVLGWMRVRRG-IGAAIALHALFNGGPVL 247
Cdd:COG1266   29 GRLRRRFGPWLAIL--LSSLLFGLLHLPNL-----------LGFLPAFLLGLVLGLLYLRTGsLWVPILLHALNNLLALL 95


                 ..
gi 504853946 248 MI 249
Cdd:COG1266   96 LL 97
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 169-249 4.45e-03

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 35.54  E-value: 4.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504853946 169 TSWRRYYSYRFGLVfhLVALTFAAVHLNNFslsqtpvwllpLLVLPQWATGLVLGWMRVRRG-IGAAIALHALFNGGPVL 247
Cdd:COG1266   29 GRLRRRFGPWLAIL--LSSLLFGLLHLPNL-----------LGFLPAFLLGLVLGLLYLRTGsLWVPILLHALNNLLALL 95


                 ..
gi 504853946 248 MI 249
Cdd:COG1266   96 LL 97
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 169-249 4.45e-03

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 35.54  E-value: 4.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504853946 169 TSWRRYYSYRFGLVfhLVALTFAAVHLNNFslsqtpvwllpLLVLPQWATGLVLGWMRVRRG-IGAAIALHALFNGGPVL 247
Cdd:COG1266   29 GRLRRRFGPWLAIL--LSSLLFGLLHLPNL-----------LGFLPAFLLGLVLGLLYLRTGsLWVPILLHALNNLLALL 95


                 ..
gi 504853946 248 MI 249
Cdd:COG1266   96 LL 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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