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Conserved domains on  [gi|505054651|ref|WP_015241753|]
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Atu4866 domain-containing protein [Sinorhizobium meliloti]

Protein Classification

Atu4866 domain-containing protein( domain architecture ID 10568838)

Atu4866 domain-containing protein similar to Agrobacterium tumefaciens protein Atu4866 with adopts a streptavidin-like fold and has a beta-barrel/sandwich with a potential ligand-binding site

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Atu4866 pfam11512
Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from ...
 59-133 5.17e-46

Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.


:

Pssm-ID: 431913  Cd Length: 75  Bit Score: 144.03  E-value: 5.17e-46
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505054651   59 NHPYVGLWVTEDSYIRHELLPNGRYIEARGTRERAYEGRYQVTGTHIDYWDDTGFTADGDFIDGVLHHAGMIFHR 133
Cdd:pfam11512   1 PHPYVGMWVTADGFIRQELLPDGRYDEARGGRESAYQGRYWVTGDHIDYLDDTGFTADGDFVDDVLHHAGMVLYR 75
 
Name Accession Description Interval E-value
Atu4866 pfam11512
Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from ...
 59-133 5.17e-46

Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.


Pssm-ID: 431913  Cd Length: 75  Bit Score: 144.03  E-value: 5.17e-46
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505054651   59 NHPYVGLWVTEDSYIRHELLPNGRYIEARGTRERAYEGRYQVTGTHIDYWDDTGFTADGDFIDGVLHHAGMIFHR 133
Cdd:pfam11512   1 PHPYVGMWVTADGFIRQELLPDGRYDEARGGRESAYQGRYWVTGDHIDYLDDTGFTADGDFVDDVLHHAGMVLYR 75
 
Name Accession Description Interval E-value
Atu4866 pfam11512
Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from ...
 59-133 5.17e-46

Agrobacterium tumefaciens protein Atu4866; Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.


Pssm-ID: 431913  Cd Length: 75  Bit Score: 144.03  E-value: 5.17e-46
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505054651   59 NHPYVGLWVTEDSYIRHELLPNGRYIEARGTRERAYEGRYQVTGTHIDYWDDTGFTADGDFIDGVLHHAGMIFHR 133
Cdd:pfam11512   1 PHPYVGMWVTADGFIRQELLPDGRYDEARGGRESAYQGRYWVTGDHIDYLDDTGFTADGDFVDDVLHHAGMVLYR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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