|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
199-406 |
4.77e-23 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 98.83 E-value: 4.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 199 ETRHIEQTLLDSKNDIAGYFRREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvaQKAIARMQAACEDMRVLTEAFL 278
Cdd:COG0642 88 LLLLLLLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQ--REYLETILRSADRLLRLINDLL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 279 LL-----GKEKIEPQHFgeqTLLVCLHQQLEELAPLFAKQDAHYQLN-EKNSGEVYAPASFVTIVINNLIKNAFSYSV-- 350
Cdd:COG0642 166 DLsrleaGKLELEPEPV---DLAELLEEVVELFRPLAEEKGIELELDlPDDLPTVRGDPDRLRQVLLNLLSNAIKYTPeg 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 351 GDIEIDLQQN----TLIITN------------------RHDGNETYNaGYGCGLVIVQRICERMGWPFELN---DDGVRF 405
Cdd:COG0642 243 GTVTVSVRREgdrvRISVEDtgpgippedlerifepffRTDPSRRGG-GTGLGLAIVKRIVELHGGTIEVEsepGKGTTF 321
|
.
gi 505126235 406 S 406
Cdd:COG0642 322 T 322
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
219-282 |
2.15e-10 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 56.07 E-value: 2.15e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505126235 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
136-393 |
1.22e-09 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 59.71 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 136 YLDEYESSLhqFTLLLGGLFSLIMLGYGIYMVKIlsRPLAKIESKISQMPP---DQPaFEVETKFSETRHIEQTLLDSKN 212
Cdd:TIGR01386 158 LLDALRKWL--ILIAVLLVLLTALLGWWITRLGL--EPLRRLSAVAARISPeslDQR-LDPSRAPAELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 213 DIAGYFRREQEFSRFASHELRTPIMVIAGSTDI-LSRVPDQPRVaQKAIARMQAACEDMRVLTEAFLLLGKekiepqhfG 291
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVaLSQPRTGEEY-REVLESNLEELERLSRMVSDMLFLAR--------A 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 292 EQTLLVC------LHQQLEELAPLFA--KQDAHYQLNEKNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN- 360
Cdd:TIGR01386 304 DNGQLALervrldLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTPdgGTITVRIERRs 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 505126235 361 ---TLIITN------------------RHDGNETYN-AGYGCGLVIVQRICERMG 393
Cdd:TIGR01386 384 devRVSVSNpgpgippehlsrlfdrfyRVDPARSNSgEGTGLGLAIVRSIMEAHG 438
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
222-282 |
1.06e-07 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 48.36 E-value: 1.06e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQ-REYLETILRSAERLLRLINDLLDLSR 62
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
222-282 |
1.23e-06 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 45.63 E-value: 1.23e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRvPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLD-TELSEEQREYLETILREAERLLRLINDLLDLSR 62
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
154-388 |
1.40e-05 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 46.95 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 154 LFSL-IMLgygIYMVKILSR---PLAKIESKISQMPPDQpafevETKFSETRhIEQT---LLDSKND----IAGYFRREQ 222
Cdd:PRK10337 168 LVALpIML---IILMVLLGRelaPLKKLALALRMRDPDS-----ETPLNATG-VPSEvrpLVEALNQlfarTHAMMVRER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 223 EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGKEKIEPQHFGEQTLlvclhqQ 302
Cdd:PRK10337 239 RFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEI------P 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 303 LEELAplfakQDA---HYQLNEKNSGEV--YAPASFV---------TIVINNLIKNAFSYSV--GDIEIDLQQNTLIITN 366
Cdd:PRK10337 313 LEDLL-----QSAvmdIYHTAQQAGIDVrlTLNAHPVirtgqplllSLLVRNLLDNAIRYSPqgSVVDVTLNARNFTVRD 387
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 505126235 367 ------------------RHDGNETynAGYGCGLVIVQRI 388
Cdd:PRK10337 388 ngpgvtpealarigerfyRPPGQEA--TGSGLGLSIVRRI 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
199-406 |
4.77e-23 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 98.83 E-value: 4.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 199 ETRHIEQTLLDSKNDIAGYFRREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvaQKAIARMQAACEDMRVLTEAFL 278
Cdd:COG0642 88 LLLLLLLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQ--REYLETILRSADRLLRLINDLL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 279 LL-----GKEKIEPQHFgeqTLLVCLHQQLEELAPLFAKQDAHYQLN-EKNSGEVYAPASFVTIVINNLIKNAFSYSV-- 350
Cdd:COG0642 166 DLsrleaGKLELEPEPV---DLAELLEEVVELFRPLAEEKGIELELDlPDDLPTVRGDPDRLRQVLLNLLSNAIKYTPeg 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 351 GDIEIDLQQN----TLIITN------------------RHDGNETYNaGYGCGLVIVQRICERMGWPFELN---DDGVRF 405
Cdd:COG0642 243 GTVTVSVRREgdrvRISVEDtgpgippedlerifepffRTDPSRRGG-GTGLGLAIVKRIVELHGGTIEVEsepGKGTTF 321
|
.
gi 505126235 406 S 406
Cdd:COG0642 322 T 322
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
219-406 |
2.47e-19 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 86.50 E-value: 2.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 219 RREQEFSRFASHELRTPIMVIAGSTDILSR-VPDQPRVAQKAIARMQAACEDMRVLTEAFLLL-----GKEKIEPQHFGe 292
Cdd:COG2205 14 RLKSEFLANVSHELRTPLTSILGAAELLLDeEDLSPEERRELLEIIRESAERLLRLIEDLLDLsrlesGKLSLELEPVD- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 293 qtLLVCLHQQLEELAPLFAKQDAHYQLN-EKNSGEVYAPASFVTIVINNLIKNAFSYS--VGDIEIDLQQN----TLIIT 365
Cdd:COG2205 93 --LAELLEEAVEELRPLAEEKGIRLELDlPPELPLVYADPELLEQVLANLLDNAIKYSppGGTITISARREgdgvRISVS 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505126235 366 NR----------------HDGNETYNA-GYGCGLVIVQRICERMGWPFELNDD---GVRFS 406
Cdd:COG2205 171 DNgpgipeeeleriferfYRGDNSRGEgGTGLGLAIVKRIVEAHGGTIWVESEpggGTTFT 231
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
126-393 |
1.06e-15 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 78.06 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 126 YIVFQDDSDDYLDEYESSLHQFTLLLGGLFSLIMLGYGIYMVKILSRPLAKIESKISQMPPDQPAFEVEtkFSETRHIEQ 205
Cdd:COG5002 69 LLLLLLLLLLLALALLLLALLLLLLLLLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLR--LSALLLGLL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 206 TLLDSKNDIAGYFRREQEFSRF---ASHELRTPIMVIAGSTD-ILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLL- 280
Cdd:COG5002 147 LLAAVERDITELERLEQMRREFvanVSHELRTPLTSIRGYLElLLDGAADDPEERREYLEIILEEAERLSRLVNDLLDLs 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 281 ----GKEKIEPQHFgeqTLLVCLHQQLEELAPLFAKQDAHYQLN-EKNSGEVYAPASFVTIVINNLIKNAFSYSV--GDI 353
Cdd:COG5002 227 rlesGELKLEKEPV---DLAELLEEVVEELRPLAEEKGIELELDlPEDPLLVLGDPDRLEQVLTNLLDNAIKYTPegGTI 303
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505126235 354 EIDLQQ--NTLIIT---------------------------NRHDGnetynaGYGCGLVIVQRICERMG 393
Cdd:COG5002 304 TVSLREedDQVRISvrdtgigipeedlpriferfyrvdksrSRETG------GTGLGLAIVKHIVEAHG 366
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
219-282 |
2.15e-10 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 56.07 E-value: 2.15e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505126235 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
222-393 |
2.79e-10 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 62.11 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSR--VPDQPRVAQKAIARMQAACEDMRVLTEAfLL----LGKEKIEPQHFgeqTL 295
Cdd:COG4251 283 EQFAYVASHDLREPLRKISGFSQLLEEdyGDKLDEEGREYLERIRDAAERMQALIDD-LLaysrVGRQELEFEPV---DL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 296 LVCLHQQLEELAPLFakQDAHYQLNEKNSGEVYAPASFVTIVINNLIKNAFSYS----VGDIEIDLQQN----TLIIT-- 365
Cdd:COG4251 359 NELLEEVLEDLEPRI--EERGAEIEVGPLPTVRGDPTLLRQVFQNLISNAIKYSrpgePPRIEIGAEREggewVFSVRdn 436
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 505126235 366 ----------------NRHDGNETYnAGYGCGLVIVQRICERMG 393
Cdd:COG4251 437 gigidpeyaekifeifQRLHSRDEY-EGTGIGLAIVKKIVERHG 479
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
136-393 |
1.22e-09 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 59.71 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 136 YLDEYESSLhqFTLLLGGLFSLIMLGYGIYMVKIlsRPLAKIESKISQMPP---DQPaFEVETKFSETRHIEQTLLDSKN 212
Cdd:TIGR01386 158 LLDALRKWL--ILIAVLLVLLTALLGWWITRLGL--EPLRRLSAVAARISPeslDQR-LDPSRAPAELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 213 DIAGYFRREQEFSRFASHELRTPIMVIAGSTDI-LSRVPDQPRVaQKAIARMQAACEDMRVLTEAFLLLGKekiepqhfG 291
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVaLSQPRTGEEY-REVLESNLEELERLSRMVSDMLFLAR--------A 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 292 EQTLLVC------LHQQLEELAPLFA--KQDAHYQLNEKNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN- 360
Cdd:TIGR01386 304 DNGQLALervrldLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTPdgGTITVRIERRs 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 505126235 361 ---TLIITN------------------RHDGNETYN-AGYGCGLVIVQRICERMG 393
Cdd:TIGR01386 384 devRVSVSNpgpgippehlsrlfdrfyRVDPARSNSgEGTGLGLAIVRSIMEAHG 438
|
|
| phoR_proteo |
TIGR02966 |
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory ... |
222-358 |
2.75e-08 |
|
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems]
Pssm-ID: 274368 [Multi-domain] Cd Length: 333 Bit Score: 54.91 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRVPD-QPRVAQKAIARMQAACEDMRVLTEAFLLLGKEKIEPQHFGEQTLLV--C 298
Cdd:TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPDeDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMpaL 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 299 LHQQLEELAPLFAKQDAHYQLNEKNSGEVYAPASFVTIVINNLIKNAFSYSVGDIEIDLQ 358
Cdd:TIGR02966 195 LDHLRDEAEALSQGKNHQITFEIDGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVR 254
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
222-282 |
1.06e-07 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 48.36 E-value: 1.06e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQ-REYLETILRSAERLLRLINDLLDLSR 62
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
229-406 |
9.83e-07 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 50.73 E-value: 9.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 229 SHELRTPIMVIAGSTDILSR-----VPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGK-EKIEPQhfgeqtlLVCLHQQ 302
Cdd:COG5000 209 AHEIKNPLTPIQLSAERLRRkladkLEEDREDLERALDTIIRQVDRLKRIVDEFLDFARlPEPQLE-------PVDLNEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 303 LEELAPLFAKQDAHYQLN-----EKNSGEVYAPASFVTIVINNLIKNAF--SYSVGDIEIDLQQN----TLII------- 364
Cdd:COG5000 282 LREVLALYEPALKEKDIRleldlDPDLPEVLADRDQLEQVLINLLKNAIeaIEEGGEIEVSTRREdgrvRIEVsdngpgi 361
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 505126235 365 -------------TNRHDGNetynagyGCGLVIVQRICERMGWPFELN---DDGVRFS 406
Cdd:COG5000 362 peevlerifepffTTKPKGT-------GLGLAIVKKIVEEHGGTIELEsrpGGGTTFT 412
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
222-282 |
1.23e-06 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 45.63 E-value: 1.23e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRvPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGK 282
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLD-TELSEEQREYLETILREAERLLRLINDLLDLSR 62
|
|
| marine_sort_HK |
TIGR03785 |
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is ... |
222-405 |
7.13e-06 |
|
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Pssm-ID: 163497 [Multi-domain] Cd Length: 703 Bit Score: 48.20 E-value: 7.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvAQKAIARMQAACEDMRVL----TEAFLLlgKEKI---EPQHFGEQT 294
Cdd:TIGR03785 486 ENMSSRLSHELRTPVAVVRSSLENLELQALEQE-KQKYLERAREGTERLSMIlnnmSEATRL--EQAIqsaEVEDFDLSE 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 295 LLVCLHQQLEelaPLFAKQDAHYQLNEKN-----SGEVYAPAsfvtivINNLIKNA--FSYSVGDIEIDLQQN----TLI 363
Cdd:TIGR03785 563 VLSGCMQGYQ---MTYPPQRFELNIPETPlvmrgSPELIAQM------LDKLVDNAreFSPEDGLIEVGLSQNkshaLLT 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505126235 364 ITN------RHDGNETYNA-------------GYGCGLVIVQRICERMGWPFEL----NDDGVRF 405
Cdd:TIGR03785 634 VSNegpplpEDMGEQLFDSmvsvrdqgaqdqpHLGLGLYIVRLIADFHQGRIQAenrqQNDGVVF 698
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
230-372 |
8.35e-06 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 47.49 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 230 HELRTPIMVIAGSTDILSR-VPDQPRV--AQKAIARMQAACEDMRVLTEAFLLLG-KEKIEPQhfgeqtlLVCLHQQLEE 305
Cdd:COG4191 151 HEINNPLAAILGNAELLRRrLEDEPDPeeLREALERILEGAERAAEIVRSLRAFSrRDEEERE-------PVDLNELIDE 223
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505126235 306 ----LAPLFAKQDAHYQLN-EKNSGEVYAPASFVTIVINNLIKNAFsYSVGDIEidlqQNTLIITNRHDGNE 372
Cdd:COG4191 224 alelLRPRLKARGIEVELDlPPDLPPVLGDPGQLEQVLLNLLINAI-DAMEEGE----GGRITISTRREGDY 290
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
154-388 |
1.40e-05 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 46.95 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 154 LFSL-IMLgygIYMVKILSR---PLAKIESKISQMPPDQpafevETKFSETRhIEQT---LLDSKND----IAGYFRREQ 222
Cdd:PRK10337 168 LVALpIML---IILMVLLGRelaPLKKLALALRMRDPDS-----ETPLNATG-VPSEvrpLVEALNQlfarTHAMMVRER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 223 EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGKEKIEPQHFGEQTLlvclhqQ 302
Cdd:PRK10337 239 RFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEI------P 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 303 LEELAplfakQDA---HYQLNEKNSGEV--YAPASFV---------TIVINNLIKNAFSYSV--GDIEIDLQQNTLIITN 366
Cdd:PRK10337 313 LEDLL-----QSAvmdIYHTAQQAGIDVrlTLNAHPVirtgqplllSLLVRNLLDNAIRYSPqgSVVDVTLNARNFTVRD 387
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 505126235 367 ------------------RHDGNETynAGYGCGLVIVQRI 388
Cdd:PRK10337 388 ngpgvtpealarigerfyRPPGQEA--TGSGLGLSIVRRI 425
|
|
| PRK10755 |
PRK10755 |
two-component system sensor histidine kinase PmrB; |
156-390 |
5.02e-05 |
|
two-component system sensor histidine kinase PmrB;
Pssm-ID: 236751 [Multi-domain] Cd Length: 356 Bit Score: 44.96 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 156 SLIMLGYGIYM----VKILSRPLAKIESKISQMPPD--QPaFEVETKFSETRHIEQTL--LDSKNDIAgyFRREQEFSRF 227
Cdd:PRK10755 67 SLVMVSLTLLIcfqaVRWITRPLAELQKELEARTADnlTP-IAIHSSTLEIEAVTSALnqLVSRLTST--LDQERLFTAD 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 228 ASHELRTPIMVIAGSTDILSR--VPD-QPRVAQkaIARMQAACEDMRVLTEAflllgkekiepqhfgEQTLLVCLHQQL- 303
Cdd:PRK10755 144 VAHELRTPLAGIRLHLELLEKqhHIDvAPLIAR--LDQMMHTVEQLLQLARA---------------GQSFSSGHYQTVk 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 304 ----------EELAPLFAKQDAHYQLNEKNS-GEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQNT--LIITNRH 368
Cdd:PRK10755 207 lledvilpsqDELSEMLEQRQQTLLLPESAAdITVQGDATLLRLLLRNLVENAHRYSPegSTITIKLSQEDggAVLAVED 286
|
250 260 270
....*....|....*....|....*....|....*....
gi 505126235 369 DGN-----------------ETYNAGYGCGLVIVQRICE 390
Cdd:PRK10755 287 EGPgideskcgelskafvrmDSRYGGIGLGLSIVSRITQ 325
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
337-393 |
1.05e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 41.48 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 337 VINNLIKNA--FSYSVGDIEIDL--QQNTLIITNRHDG--------------------NETYNAGYGCGLVIVQRICERM 392
Cdd:smart00387 9 VLSNLLDNAikYTPEGGRITVTLerDGDHVEITVEDNGpgippedlekifepffrtdkRSRKIGGTGLGLSIVKKLVELH 88
|
.
gi 505126235 393 G 393
Cdd:smart00387 89 G 89
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
198-346 |
4.58e-03 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 39.06 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 198 SETRHIEQTLLdskndiagyfRREQ-----EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIARMQAACEDMRV 272
Cdd:COG3852 117 TERKRLERELR----------RAEKlaavgELAAGLAHEIRNPLTGIRGAAQLLERELPDDEL-REYTQLIIEEADRLNN 185
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505126235 273 LTEAFLLLGKEKiePQHFGEqtllVCLHQQLEELAPLFAKQ-DAHYQLNEK---NSGEVYAPASFVTIVINNLIKNAF 346
Cdd:COG3852 186 LVDRLLSFSRPR--PPEREP----VNLHEVLERVLELLRAEaPKNIRIVRDydpSLPEVLGDPDQLIQVLLNLVRNAA 257
|
|
| phoR |
PRK11006 |
phosphate regulon sensor histidine kinase PhoR; |
227-360 |
5.58e-03 |
|
phosphate regulon sensor histidine kinase PhoR;
Pssm-ID: 182895 [Multi-domain] Cd Length: 430 Bit Score: 38.84 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 227 FA--SHELRTPIMVIAGSTDILSRVPDQPRVAQKAIARMQAACEDMRVLTEAFLLLGKEKIEPQHFGEQT-----LLVCL 299
Cdd:PRK11006 208 FAnvSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKvdvpmMLRVL 287
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505126235 300 HQQLEELAPlfAKQDAHYQLNEKNSgeVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN 360
Cdd:PRK11006 288 EREAQTLSQ--GKHTITFEVDNSLK--VFGNEDQLRSAISNLVYNAVNHTPegTHITVRWQRV 346
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
337-409 |
7.67e-03 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 35.81 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505126235 337 VINNLIKNA--FSYSVGDIEIDLQQ-NTLIITNRHDG------------------NETYNAGYGCGLVIVQRICERMGWP 395
Cdd:pfam02518 9 VLSNLLDNAlkHAAKAGEITVTLSEgGELTLTVEDNGigippedlprifepfstaDKRGGGGTGLGLSIVRKLVELLGGT 88
|
90
....*....|....*..
gi 505126235 396 FELNDD---GVRFSAKV 409
Cdd:pfam02518 89 ITVESEpggGTTVTLTL 105
|
|
| |
