|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
22-329 |
8.73e-155 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 437.05 E-value: 8.73e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 22 MGDLMQTVGILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSL 101
Cdd:COG4158 23 LRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPVPWLV 181
Cdd:COG4158 103 LPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 182 VIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGN-LGVGYEL 260
Cdd:COG4158 183 VIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYEL 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505181606 261 DAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHH 329
Cdd:COG4158 263 DAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGS 331
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
35-324 |
2.16e-75 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 234.61 E-value: 2.16e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 35 LILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSLIPPfAMLSIPAA 113
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIEVN-ALVAVPAA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 114 LMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI-----NSDiSFEWIGNNYLGPVPWLVVIALAVV 188
Cdd:PRK09512 104 LALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftdNAD-LFGWFGIGRPLGIPTPVWIMAIVF 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 189 AVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVIL 268
Cdd:PRK09512 183 LAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVL 262
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 505181606 269 GGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09512 263 GGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-322 |
6.46e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 216.12 E-value: 6.46e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 62 SSINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 141 GTYTALRGAAYLLADGTTVINSDISFEW-IGNNYLGPVPWLVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGI 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 220 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 505181606 300 MGVSYFWQLVIKGAVIIIAVLID 322
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-324 |
6.01e-50 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 170.33 E-value: 6.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 26 MQTVGILPILILIVAVFGFVAPN-FFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAA--MVVSL 101
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAvlMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFamLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPV---- 177
Cdd:NF040906 82 MPWW--LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfggt 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 178 -----------------------------------------------------------------PWLVVIALAVVAVCW 192
Cdd:NF040906 160 glhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 193 FILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTS 272
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 505181606 273 FVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-319 |
3.81e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.17 E-value: 3.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 54 NLLNITRQSSINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPPFAMLSIPAALMLGLLLGLFNGALVAFA 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 132 GLPPFIVTLGTYTALRGAAYLLADGTTVINSDIS-----FEWIGNNYLGPVPWLVVIALAVVAVCWFILRRTTLGIHIYA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 207 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsfvGGIGTITGTLV 285
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 505181606 286 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 319
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
22-329 |
8.73e-155 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 437.05 E-value: 8.73e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 22 MGDLMQTVGILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSL 101
Cdd:COG4158 23 LRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPVPWLV 181
Cdd:COG4158 103 LPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 182 VIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGN-LGVGYEL 260
Cdd:COG4158 183 VIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYEL 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505181606 261 DAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHH 329
Cdd:COG4158 263 DAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGS 331
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
25-327 |
2.62e-91 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 275.06 E-value: 2.62e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 25 LMQTVGILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPP 104
Cdd:COG1172 15 LLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 105 FAM-LSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPVPWLVVI 183
Cdd:COG1172 95 LPIlLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 184 ALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAI 263
Cdd:COG1172 175 ALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAI 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505181606 264 AAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTR 327
Cdd:COG1172 255 AAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
35-324 |
2.16e-75 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 234.61 E-value: 2.16e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 35 LILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSLIPPfAMLSIPAA 113
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIEVN-ALVAVPAA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 114 LMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI-----NSDiSFEWIGNNYLGPVPWLVVIALAVV 188
Cdd:PRK09512 104 LALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftdNAD-LFGWFGIGRPLGIPTPVWIMAIVF 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 189 AVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVIL 268
Cdd:PRK09512 183 LAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVL 262
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 505181606 269 GGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09512 263 GGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
26-324 |
1.62e-69 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 221.91 E-value: 1.62e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 26 MQTVGILPILILIVAVFGFV-APNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAA--MVVSL 101
Cdd:COG4214 22 LRSLGMIIALVVIWIVFQILtGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVgAVAAvlMVNWG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFamLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGP----- 176
Cdd:COG4214 102 LPWW--LAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLPDilgtl 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 177 -----------------------------------------------------------VPWLVVIALAVVAVCWFILRR 197
Cdd:COG4214 180 swvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrgIPIVVLILLVLVVVYTFVLTR 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 198 TTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGI 277
Cdd:COG4214 260 TVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGV 339
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 505181606 278 GTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:COG4214 340 GTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVL 386
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
62-322 |
6.46e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 216.12 E-value: 6.46e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 62 SSINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 141 GTYTALRGAAYLLADGTTVINSDISFEW-IGNNYLGPVPWLVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGI 219
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 220 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 299
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 505181606 300 MGVSYFWQLVIKGAVIIIAVLID 322
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
30-322 |
6.29e-61 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 197.81 E-value: 6.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 30 GILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAA--------MVVSL 101
Cdd:COG4211 17 AIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISasllqsgdYAGKF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFAMLSIPAALMLGLLLGLFNGAL----VAFAGLPPFIVTLGTYTALRGAAYLLADGTTV-----INSDISFEWIGNN 172
Cdd:COG4211 97 FPNLPELPIIVPILIAIAIGALFGLIngffVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAqpiggLDESFTNFAQGSI 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 173 YLGPV--PWLVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSA 250
Cdd:COG4211 177 NIGGFgiPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGFAGFLEAARTGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505181606 251 NGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:COG4211 257 TNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAAVALD 328
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
24-324 |
3.09e-54 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 179.97 E-value: 3.09e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 24 DLMQTVGILPILILIVAVFGFVAPN-FFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAV--AAMVVS 100
Cdd:PRK09699 7 LFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMvtAKLMLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 101 LIPPFaMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPVPWL 180
Cdd:PRK09699 87 GVDPF-LAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 181 VVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYEL 260
Cdd:PRK09699 166 VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFET 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505181606 261 DAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:PRK09699 246 YAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
30-322 |
1.15e-52 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 176.42 E-value: 1.15e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 30 GILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAM--------VVSL 101
Cdd:PRK09478 17 GIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtllqsmdnANKV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFAMLSIPAALMLGLLLGLFNG----ALVAFAGLPPFIVTLGTYTALRGAAYLLAD--GTTVI---NSDISFEWIGNN 172
Cdd:PRK09478 97 FPELATMPIALVILIVCAIGAVIGlingLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvGASPIsgfDSGFSTFAQGFV 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 173 YLGP--VPWLVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSA 250
Cdd:PRK09478 177 ALGSfrLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505181606 251 NGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID 322
Cdd:PRK09478 257 TNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-324 |
6.01e-50 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 170.33 E-value: 6.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 26 MQTVGILPILILIVAVFGFVAPN-FFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAA--MVVSL 101
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAvlMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 102 IPPFamLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPV---- 177
Cdd:NF040906 82 MPWW--LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfggt 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 178 -----------------------------------------------------------------PWLVVIALAVVAVCW 192
Cdd:NF040906 160 glhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 193 FILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTS 272
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 505181606 273 FVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 324
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
20-327 |
3.63e-46 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 159.46 E-value: 3.63e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 20 MLMGDLMQTVGILPILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVV 99
Cdd:PRK11285 21 FSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 100 SLIPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNNYLGPVPW 179
Cdd:PRK11285 101 INATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 180 LVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYE 259
Cdd:PRK11285 181 PIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFE 260
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505181606 260 LDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTR 327
Cdd:PRK11285 261 LIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
32-328 |
5.60e-34 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 126.99 E-value: 5.60e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 32 LPILI---LIVAVFGFVA---PNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMVVSLIPP 104
Cdd:PRK11618 6 LPLMItigVFVLGYLFCLvqfPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAfTGVFLAKLIGDYGW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 105 FAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN-------SDISFEWIGNnylGPV 177
Cdd:PRK11618 86 SPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINhpfydtlSSLAWKLPGG---GRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 178 PWLVVIALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVG 257
Cdd:PRK11618 163 SAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVG 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505181606 258 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMG-VSYFWQLVIKGAVIIIAVLIDKYRTRH 328
Cdd:PRK11618 243 VELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQRGLTVL 314
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
32-327 |
8.88e-27 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 107.89 E-value: 8.88e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 32 LPILILIVAVF---GFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPPFAML 108
Cdd:PRK15432 11 LTALLAIVLLFvllGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLPV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 109 SIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNN-YLGPVPWLVVIALAV 187
Cdd:PRK15432 91 ACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPiLLGISPIGWLTLILI 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 188 VAVCWFiLRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVI 267
Cdd:PRK15432 171 LAMAWL-LAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACV 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 268 LGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGaVIIIAVLIDKYRTR 327
Cdd:PRK15432 250 LGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAG-LVLLGVLVFDGRLR 308
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
34-330 |
1.66e-23 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 98.75 E-value: 1.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 34 ILILIVAVFGFVAPNFFTESNLLNITRQSSINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPPFAMLSIPAA 113
Cdd:PRK15038 14 LLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 114 LMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADgttvINSDISFEWIG----------NNYLGPVPWLVVI 183
Cdd:PRK15038 94 LLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG----MAGATGYEGIGgfpmaftdfaNLDVLGLPVPLII 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 184 ALAVVAVCWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAI 263
Cdd:PRK15038 170 FLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAI 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505181606 264 AAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHQ 330
Cdd:PRK15038 250 TAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQ 316
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
54-319 |
3.81e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.17 E-value: 3.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 54 NLLNITRQSSINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPPFAMLSIPAALMLGLLLGLFNGALVAFA 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 132 GLPPFIVTLGTYTALRGAAYLLADGTTVINSDIS-----FEWIGNNYLGPVPWLVVIALAVVAVCWFILRRTTLGIHIYA 206
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 207 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsfvGGIGTITGTLV 285
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 505181606 286 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 319
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
62-319 |
3.68e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 68.46 E-value: 3.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 62 SSINIVLAAGMTFIILTGGI-DLSVGSILGTTAVAAMVVSLIPPFAMLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTL 140
Cdd:cd06574 1 GLIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 141 GTYTALR-------GAAYLLADGTTVINSDISFEWIGNNYLGPVPWLVVIALAVVAVCWFilRRTTLGIHIYAVGGNMQA 213
Cdd:cd06574 81 LIMIGLYsinlrimGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWF--LRTKLGLAMRATGDNPDM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 214 ARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGVGYELDAIAAVILGGTSF--VGGIGTITGTLVGALIIA 291
Cdd:cd06574 159 ARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYR 238
|
250 260
....*....|....*....|....*...
gi 505181606 292 TLNNGMTLMGVSYFWQLVIKGAVIIIAV 319
Cdd:cd06574 239 IALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
192-321 |
5.88e-13 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 68.17 E-value: 5.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 192 WFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRlYSANGNLGVGYELDAIAAVILggt 271
Cdd:COG0559 155 WLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPI-YSVSPTMGFLLGLKAFAAVVL--- 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 505181606 272 sfvGGIGTITGTLVGALIIATLNNGMTLMgVSYFWQLVIkGAVIIIAVLI 321
Cdd:COG0559 231 ---GGLGSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
192-321 |
6.79e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.68 E-value: 6.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 192 WFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASrLYSANGNLGVGYELDAIAAVILggt 271
Cdd:cd06582 145 YLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVL--- 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 505181606 272 sfvGGIGTITGTLVGALIIATLNNGMTLMgVSYFWQLVIkGAVIIIAVLI 321
Cdd:cd06582 221 ---GGLGSIPGAVVGGLLLGLAESLAAAY-LSSGYKDAV-AFVLLILVLL 265
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
192-321 |
1.21e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 57.83 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 192 WFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG-VMSASRLYSANGNLGVGYELDAIAAVILGG 270
Cdd:cd06580 109 WLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVLGVQGRFTEGMSAGYGFIAIAVALLGR 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 505181606 271 TSFVggigtitGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI 321
Cdd:cd06580 189 WNPL-------GILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
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| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
191-321 |
1.96e-09 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 58.21 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 191 CWFILRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMS-ASRLYSANGNLGVGYELDAIAAVILG 269
Cdd:COG4603 210 VWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTPGFSPGYGFTGIAVALLG 289
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 505181606 270 GTSFVggigtitGTLVGALIIATLNNGMTLMGVSYfwQLVIKGAVIIIAVLI 321
Cdd:COG4603 290 RNNPL-------GIILAALLFGALYVGGDAMQRAL--GVPSEIVDVIQGLII 332
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
195-320 |
5.11e-08 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 53.55 E-value: 5.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 195 LRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVILggtsf 273
Cdd:COG4177 152 LVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpESFSFLLSIEILLMVVL----- 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 505181606 274 vGGIGTITGTLVGALIIATLNNGMTLMGvsyFWQLVIKGAVIIIAVL 320
Cdd:COG4177 227 -GGLGSLLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
195-320 |
2.05e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 51.29 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505181606 195 LRRTTLGIHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGVGYELDAIAAVIlggtsf 273
Cdd:cd06581 142 LVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSpESFGFALSIELLLMVV------ 215
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 505181606 274 VGGIGTITGTLVGALIIATLNNGmtLMGVSYFWQLVIKGAVIIIAVL 320
Cdd:cd06581 216 LGGLGSLLGPVLGAALLVLLPEL--LRSLGPGLRLLVFGLLLILVVL 260
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