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Conserved domains on  [gi|505190897|ref|WP_015377999|]
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MULTISPECIES: DUF333 domain-containing protein [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF333 super family cl46806
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 40-81 2.26e-09

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


The actual alignment was detected with superfamily member pfam03891:

Pssm-ID: 481146  Cd Length: 46  Bit Score: 48.00  E-value: 2.26e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 505190897  40 SAGCAAVGGVTTIAHNLNGEALRMCQMPNGKQCEERTLGLGS 81
Cdd:pfam03891  5 SVYCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
 
Name Accession Description Interval E-value
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 40-81 2.26e-09

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 48.00  E-value: 2.26e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 505190897  40 SAGCAAVGGVTTIAHNLNGEALRMCQMPNGKQCEERTLGLGS 81
Cdd:pfam03891  5 SVYCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
Hlx COG3042
Putative hemolysin [General function prediction only];
18-83 2.47e-09

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 48.88  E-value: 2.47e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505190897 18 CSSNNEEP-----VQQGNSArintlqtSAGCAAVGGVTTIAHNLNGEALRMCQMPNGKQCEERTLGLGSCA 83
Cdd:COG3042  19 CSSSQPNAppppqIGMANPA-------SVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCEEWALYRGDCP 82
 
Name Accession Description Interval E-value
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 40-81 2.26e-09

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 48.00  E-value: 2.26e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 505190897  40 SAGCAAVGGVTTIAHNLNGEALRMCQMPNGKQCEERTLGLGS 81
Cdd:pfam03891  5 SVYCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
Hlx COG3042
Putative hemolysin [General function prediction only];
18-83 2.47e-09

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 48.88  E-value: 2.47e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505190897 18 CSSNNEEP-----VQQGNSArintlqtSAGCAAVGGVTTIAHNLNGEALRMCQMPNGKQCEERTLGLGSCA 83
Cdd:COG3042  19 CSSSQPNAppppqIGMANPA-------SVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCEEWALYRGDCP 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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