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Conserved domains on  [gi|505239483|ref|WP_015426585|]
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MULTISPECIES: hypothetical protein [Lactococcus]

Protein Classification

RPC10 family protein( domain architecture ID 10005088)

RPC10 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 94-124 1.62e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


:

Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.62e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 505239483  94 CPSCGAEIVTDATTASTWCYYCHNPVVLTER 124
Cdd:COG1996    8 CPRCGAEVELDEGTPAIRCPYCGSRIFIKER 38
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 6-34 1.82e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


:

Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.82e-04
                         10        20
                 ....*....|....*....|....*....
gi 505239483   6 VLTHKCPNCGGPLLFEPKNQKFHCEYCGS 34
Cdd:COG1996    3 MVEYKCPRCGAEVELDEGTPAIRCPYCGS 31
 
Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 94-124 1.62e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.62e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 505239483  94 CPSCGAEIVTDATTASTWCYYCHNPVVLTER 124
Cdd:COG1996    8 CPRCGAEVELDEGTPAIRCPYCGSRIFIKER 38
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 6-34 1.82e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.82e-04
                         10        20
                 ....*....|....*....|....*....
gi 505239483   6 VLTHKCPNCGGPLLFEPKNQKFHCEYCGS 34
Cdd:COG1996    3 MVEYKCPRCGAEVELDEGTPAIRCPYCGS 31
 
Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 94-124 1.62e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.62e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 505239483  94 CPSCGAEIVTDATTASTWCYYCHNPVVLTER 124
Cdd:COG1996    8 CPRCGAEVELDEGTPAIRCPYCGSRIFIKER 38
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 6-34 1.82e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.91  E-value: 1.82e-04
                         10        20
                 ....*....|....*....|....*....
gi 505239483   6 VLTHKCPNCGGPLLFEPKNQKFHCEYCGS 34
Cdd:COG1996    3 MVEYKCPRCGAEVELDEGTPAIRCPYCGS 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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