|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
1-267 |
0e+00 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 522.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 1 MSSTDSSAEKRITGTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNAPGVEP 80
Cdd:PRK09802 1 MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 81 SVEDKSSLNTAVKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
Cdd:PRK09802 81 SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 161 RQSQSFYGDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
Cdd:PRK09802 161 RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
|
250 260
....*....|....*....|....*..
gi 505384856 241 DMIIVDEGIPAESLEGLRKSGIDVVLV 267
Cdd:PRK09802 241 DMIIVDEGIPADSLEGLRKAGVEVILV 267
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
12-267 |
0e+00 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 521.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 12 ITGTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNAPGVEPSVEDKSSLNTA 91
Cdd:NF040755 1 MKGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 92 VKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQA 171
Cdd:NF040755 81 VKRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 172 EQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:NF040755 161 EQSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPE 240
|
250
....*....|....*.
gi 505384856 252 ESLEGLRKSGIDVVLV 267
Cdd:NF040755 241 EYLQGLRKLGVEVILV 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
15-267 |
1.49e-107 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 311.30 E-value: 1.49e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 15 TSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGnaPGVEPSVEDKSSLNTAVKR 94
Cdd:COG1349 3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSS--AAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 95 SIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQS 174
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 175 LQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESL 254
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|...
gi 505384856 255 EGLRKSGIDVVLV 267
Cdd:COG1349 241 EALEEAGVEVIVA 253
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
88-247 |
1.71e-71 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 216.61 E-value: 1.71e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 88 LNTAVKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 168 GDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDE 247
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
18-68 |
6.83e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 64.55 E-value: 6.83e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 505384856 18 RREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGA 68
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
14-60 |
8.85e-03 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 36.59 E-value: 8.85e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 505384856 14 GTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGI 60
Cdd:cd09655 136 GLSREELKILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGL 182
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
1-267 |
0e+00 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 522.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 1 MSSTDSSAEKRITGTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNAPGVEP 80
Cdd:PRK09802 1 MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 81 SVEDKSSLNTAVKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
Cdd:PRK09802 81 SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 161 RQSQSFYGDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
Cdd:PRK09802 161 RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
|
250 260
....*....|....*....|....*..
gi 505384856 241 DMIIVDEGIPAESLEGLRKSGIDVVLV 267
Cdd:PRK09802 241 DMIIVDEGIPADSLEGLRKAGVEVILV 267
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
12-267 |
0e+00 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 521.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 12 ITGTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNAPGVEPSVEDKSSLNTA 91
Cdd:NF040755 1 MKGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 92 VKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQA 171
Cdd:NF040755 81 VKRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 172 EQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:NF040755 161 EQSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPE 240
|
250
....*....|....*.
gi 505384856 252 ESLEGLRKSGIDVVLV 267
Cdd:NF040755 241 EYLQGLRKLGVEVILV 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
15-267 |
1.49e-107 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 311.30 E-value: 1.49e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 15 TSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGnaPGVEPSVEDKSSLNTAVKR 94
Cdd:COG1349 3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSS--AAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 95 SIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQS 174
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 175 LQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESL 254
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|...
gi 505384856 255 EGLRKSGIDVVLV 267
Cdd:COG1349 241 EALEEAGVEVIVA 253
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
88-247 |
1.71e-71 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 216.61 E-value: 1.71e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 88 LNTAVKRSIAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 168 GDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDE 247
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
17-267 |
6.38e-71 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 218.40 E-value: 6.38e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 17 ERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALIcegNAPGVEPSVEDKSSLNTAVKRSI 96
Cdd:PRK10434 5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVL---NKEESDPPIDHKTLINTHKKELI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 97 AQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEG-VELLMTGGHLRRQSQSFYGDQAEQSL 175
Cdd:PRK10434 82 AEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNeQTILMPGGTFRKKSASFHGQLAENAF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 176 QNYHFDLLFLGVDAIDLDRGVSTHNEdEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESLE 255
Cdd:PRK10434 162 EHFTFDKLFIGTDGIDLNAGVTTFNE-VYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAFRQ 240
|
250
....*....|..
gi 505384856 256 GLRKSGIDVVLV 267
Cdd:PRK10434 241 ALEEKGIEVIIT 252
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
16-251 |
1.19e-28 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 109.56 E-value: 1.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 16 SERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALIcegNAPGVEPSVEDKSSLNTAVKRS 95
Cdd:PRK10906 4 TQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAAL---PSSSVNTPWHDRKATQTEEKER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 96 IAQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSL 175
Cdd:PRK10906 81 IARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDFI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505384856 176 QNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:PRK10906 161 SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPA 236
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
16-267 |
5.92e-22 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 91.61 E-value: 5.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 16 SERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNAPGVEPSVEDKSSlNTAVKRS 95
Cdd:PRK13509 4 AQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNIHQAQ-NHDEKVR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 96 IAQAAAELVKPGHRIILDSGTTTFEIARMLrQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRqSQSFYGDQAEQSL 175
Cdd:PRK13509 83 IAKAASQLCNPGESVVINCGSTAFLLGREL-CGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNK-SQSITLSPQGSEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 176 QNYHFDLLFLGVDAIDLDrGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESLE 255
Cdd:PRK13509 161 SLYAGHWMFTSGKGLTAD-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNADPEVLQ 239
|
250
....*....|..
gi 505384856 256 GLRKSGIDVVLV 267
Cdd:PRK13509 240 QLEAQGVSILLV 251
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
16-254 |
2.67e-18 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 81.39 E-value: 2.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 16 SERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGA-LICEGNAPGVEP-SVEDKSSLntAVK 93
Cdd:PRK10411 3 AARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAkYIHRQNQDSGDPfHIRLKSHY--AHK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 94 RSIAQAAAELVKPGHRIILDSGTTTFEIARMLrQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQ 173
Cdd:PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQL-PDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 174 SLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAES 253
Cdd:PRK10411 160 QLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATS 239
|
.
gi 505384856 254 L 254
Cdd:PRK10411 240 L 240
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
18-72 |
4.68e-15 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 67.67 E-value: 4.68e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 505384856 18 RREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICE 72
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNS 55
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
17-246 |
9.77e-15 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 71.65 E-value: 9.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 17 ERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDlafLEKQGIAVRAYGGALICEGNApGVEPSVEDKSSLNTAVKRSI 96
Cdd:PRK10681 7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRD---LNAHSAPVVLLGGYIVLEPRS-ASHYLLSDQKSRLVEEKRRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 97 AQAAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQ 176
Cdd:PRK10681 83 AQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQTLD 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505384856 177 NYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRKMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVD 246
Cdd:PRK10681 163 NICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSD 232
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
18-68 |
6.83e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 64.55 E-value: 6.83e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 505384856 18 RREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGGA 68
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
20-64 |
3.70e-04 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 37.41 E-value: 3.70e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 505384856 20 EQIIQRLR-AQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRA 64
Cdd:pfam08279 1 LQILQLLLeARGPISGQELAEKLGVSRRTIRRDIKILEELGVPIEA 46
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
15-67 |
5.94e-04 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 40.45 E-value: 5.94e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 505384856 15 TSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAYGG 67
Cdd:COG2378 3 RLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGVPIEAERG 55
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
1-65 |
6.17e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 36.82 E-value: 6.17e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505384856 1 MSSTDSSAekriTGTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGIAVRAY 65
Cdd:COG2345 1 MTDTPALA----ALADPTRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERET 61
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
14-60 |
8.85e-03 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 36.59 E-value: 8.85e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 505384856 14 GTSERREQIIQRLRAQGSVQVNDLSLLYGVSTVTIRNDLAFLEKQGI 60
Cdd:cd09655 136 GLSREELKILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGL 182
|
|
| PRK00702 |
PRK00702 |
ribose-5-phosphate isomerase RpiA; |
93-153 |
9.34e-03 |
|
ribose-5-phosphate isomerase RpiA;
Pssm-ID: 234816 Cd Length: 220 Bit Score: 36.58 E-value: 9.34e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505384856 93 KRSIAQAAAELVKPGHRIILDSGTTTF----EIARMLRQHTDVIAMTNGmNVANALLEAEGVELL 153
Cdd:PRK00702 7 KKAAAEAAAEYVEDGMIVGLGTGSTAAyfidALGERVKEGLIIGGVPTS-EASTELAKELGIPLF 70
|
|
| |
