NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|505806294|ref|WP_015704055|]
View 

MULTISPECIES: YjcB family protein [Klebsiella]

Protein Classification

YjcB family protein( domain architecture ID 11239907)

YjcB family protein similar to Escherichia coli protein YjcB

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YjcB pfam15940
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-88 2.16e-42

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


:

Pssm-ID: 435031  Cd Length: 88  Bit Score: 133.37  E-value: 2.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505806294   1 MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAIICSCLGLAAACWFATGLLGITMVDVAKIWGNIKDVMVEV 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLADVAAIWANTKDVMIEM 80


                 ....*...
gi 505806294  81 MSQTPPEW 88
Cdd:pfam15940 81 MSQTPPDW 88
 
Name Accession Description Interval E-value
YjcB pfam15940
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-88 2.16e-42

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 435031  Cd Length: 88  Bit Score: 133.37  E-value: 2.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505806294   1 MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAIICSCLGLAAACWFATGLLGITMVDVAKIWGNIKDVMVEV 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLADVAAIWANTKDVMIEM 80


                 ....*...
gi 505806294  81 MSQTPPEW 88
Cdd:pfam15940 81 MSQTPPDW 88
 
Name Accession Description Interval E-value
YjcB pfam15940
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-88 2.16e-42

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 435031  Cd Length: 88  Bit Score: 133.37  E-value: 2.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505806294   1 MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAIICSCLGLAAACWFATGLLGITMVDVAKIWGNIKDVMVEV 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLADVAAIWANTKDVMIEM 80


                 ....*...
gi 505806294  81 MSQTPPEW 88
Cdd:pfam15940 81 MSQTPPDW 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH