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Conserved domains on  [gi|505807180|ref|WP_015704934|]
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MULTISPECIES: flagellar basal body rod protein FlgF [Klebsiella]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11469171)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 9.33e-144

Flagellar basal body rod protein FlgF [Cell motility];


:

Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 402.20  E-value: 9.33e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 160 RLKLVKADAREVMRGDDGLFRLTPetqqrrGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 505807180 240 NEQRANSLLSVS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
 
Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 9.33e-144

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 402.20  E-value: 9.33e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 160 RLKLVKADAREVMRGDDGLFRLTPetqqrrGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 505807180 240 NEQRANSLLSVS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 8.61e-140

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 392.30  E-value: 8.61e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 160 RLKLVKADAREVMRGDDGLFRLTpetqqrRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTT------DGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 505807180 240 NEQRANSLLSVS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 1.79e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 205.56  E-value: 1.79e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180    4 AIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPS--LATRTLVAASTPGADMSQGALNYTGRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   82 LQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQ-GDGGPIEVPPSA-EITIAADGTISALNPGDPPNTiaqI 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLdWGGGPITLPPDAgSVSIGEDGTVSATYSNGQTVE---L 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505807180  159 GRLKLVK-ADAREVMRGDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 1.09e-18

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 77.69  E-value: 1.09e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505807180  169 REVMRGDDGLFRLTPETQQrrgnlLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDENEQRANSL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPI-----LGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 9.33e-144

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 402.20  E-value: 9.33e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 160 RLKLVKADAREVMRGDDGLFRLTPetqqrrGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 505807180 240 NEQRANSLLSVS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 8.61e-140

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 392.30  E-value: 8.61e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 160 RLKLVKADAREVMRGDDGLFRLTpetqqrRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTT------DGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 505807180 240 NEQRANSLLSVS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-211 1.86e-107

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 309.08  E-value: 1.86e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRTLVAASTPGADMSQGALNYTGRPLDV 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  81 ALQQDGFLALSLPGGGEAYTRNGSIQVSANGQLTVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQIGR 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 505807180 161 LKLVKADAREVMRGDDGLFRLTPETQQRRGNLLANDPQVRvmPGVLEGSNV 211
Cdd:PRK12643 161 IKRVQATAGEMMHGDDGLFHLTPETQQARGAQLPNDPLVK--PGEREHQWL 209
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 1.79e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 205.56  E-value: 1.79e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180    4 AIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPS--LATRTLVAASTPGADMSQGALNYTGRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   82 LQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQ-GDGGPIEVPPSA-EITIAADGTISALNPGDPPNTiaqI 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLdWGGGPITLPPDAgSVSIGEDGTVSATYSNGQTVE---L 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505807180  159 GRLKLVK-ADAREVMRGDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-251 2.19e-59

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 188.23  E-value: 2.19e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAalraVPVDGPSLAT--RTLVAASTPGADMSQGALNYTGRPL 78
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFI----LAIQNHNVKNlyNSDKKITKEYYNLSPGTLRYTGRNL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  79 DVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQLTVQGMPLQGDGGPIEVPPSAEITIAADGTISALNPGDPPNTIAQI 158
Cdd:PRK12641  77 DLFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKI 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 159 GRLKLVKADAREVMRGDDGLFRL--TPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHS 236
Cdd:PRK12641 157 GSLKLVQLPSQDLIQKENGLFYLkkNNEINKKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISM 236

                        250
                 ....*....|....*
gi 505807180 237 VDENEQRANSLLSVS 251
Cdd:PRK12641 237 CDQNTEYANQLININ 251
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-249 1.28e-58

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 186.56  E-value: 1.28e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   5 IYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVP------VDGPSLATRTLVAASTPGA---------DMSQG 69
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLyqlirrPGAPSSQGTQTPVGLQLGTgvrvaatqtDFTQG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  70 ALNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPSA-EITIAADGTISALn 147
Cdd:COG4786   81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLvTSDGYPVLPENGPITIPEDAtSITISEDGTVSVT- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 148 pgDPPNTIAQIGRLKLVK-ADAREVMRGDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARR 226
Cdd:COG4786  160 --LADGDGQQVGQLGLVDfANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRA 237

                        250       260
                 ....*....|....*....|...
gi 505807180 227 FEMQMKVIHSVDENEQRANSLLS 249
Cdd:COG4786  238 YEANSKVIQTADEMLGKANNLRG 260
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 7-248 1.94e-36

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 129.40  E-value: 1.94e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180    7 TAMgAARQTleQQSITANNLANASTPGF---RAQLAALRAVPVDGPSLATRTLVAASTPGA-------------DMSQGA 70
Cdd:TIGR02488   7 TGM-NAQQT--NMDVISNNLANVNTTGFkkdRAEFEDLLYQTERQPGAQSSEQQTILPVGVqvglgvrvvatqkLFTQGS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   71 LNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQgdgGPIEVPPSA-EITIAADGTISALNP 148
Cdd:TIGR02488  84 LQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLvTSNGYPLQ---PEITIPENAtSITVGSDGEVSVRQG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  149 GDP-PNTIAQIGRLKLVKADAREVMrgDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRF 227
Cdd:TIGR02488 161 GQTePQEVGQITLATFINPAGLEAV--GENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAY 238

                         250       260
                  ....*....|....*....|.
gi 505807180  228 EMQMKVIHSVDENEQRANSLL 248
Cdd:TIGR02488 239 EMNSKAIQASDQMLQTVSQLL 259
flgF PRK12689
flagellar basal-body rod protein FlgF;
9-229 2.29e-35

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 126.40  E-value: 2.29e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   9 MGAARQ-TLEQQ-SITANNLANASTPGFRAQ--------LAALRAVPVDGPSLATRTLVAASTPgADMSQGALNYTGRPL 78
Cdd:PRK12689   7 VGLSRQmALERQlDVVANNVANVNTNGFKARsslfqeylMPGAHEDNFQRPDRRVSYVQDRGTP-LDLSQGPLEQTKNPL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  79 DVALQQDGFLALSLPgGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGPIEVPPS-AEITIAADGTISALNPGDPPNTIA 156
Cdd:PRK12689  86 DVAIDGDAFLAVQTP-QGERYTRDGALEINAQGQLvTSDGYPVLGTGGPITFQPTdTGIAISPDGTVSVNEGTATTDSIR 164

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505807180 157 qiGRLKLVK-ADAREVMRGDDGLFRLTpetqqrrGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEM 229
Cdd:PRK12689 165 --GKLRLVTfANPQALKKEGANLYAAT-------APARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQ 229
flgF PRK12690
flagellar hook-basal body complex protein;
1-239 6.73e-35

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 124.80  E-value: 6.73e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMgaARQT--LEQQSITANNLANASTPGFRAQLAA----LRAVPVDGPSLATRTLVAASTpgaDMSQGALNYT 74
Cdd:PRK12690   1 MDNAGYTTL--TRQSglMREMQVVANNIANASTTGFRREGLVfseyVKSLDSGEASLSMARASGRQT---DLEQGGLTQT 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  75 GRPLDVALQQDGFLALSLPgGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGG-PIEVPPSAE-ITIAADGTISAlnPGDP 151
Cdd:PRK12690  76 GGQFDFAIEGEGFFMVETP-QGERLTRAGSFTPNAEGELvDPDGNRLLDAGGaPIFIPPDARsVAVGADGTLSA--DGQP 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 152 pntiaqIGRLKLVKA-DAREVMRGDDGLFRLTPETQQRRGnllandpqVRVMPGVLEGSNVKPMETMVDMIANARRFEMQ 230
Cdd:PRK12690 153 ------LGQIGLYQPtDPLGLRREGGTRFRAEGGVEPAEG--------ARLLQGFLEGSNVNPVSEIARMIEVQRAYELG 218


                 ....*....
gi 505807180 231 MKVIHSVDE 239
Cdd:PRK12690 219 QSFLDREDE 227
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-248 2.46e-32

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 118.81  E-value: 2.46e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTA---MgAARQTleQQSITANNLANASTPGFRAQlaalRAVPVD----------GPSLATRTLV------AAST 61
Cdd:PRK12693   1 MIRALWIAktgL-DAQQT--NIDVISNNLANVNTTGFKKS----RAVFEDllyqtirqpgAQSSQNTTLPsglqvgTGVR 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  62 PGA---DMSQGALNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQgdggP-IEVPPSAE-I 135
Cdd:PRK12693  74 PVAtqkIFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLvTSGGYPLQ----PeITIPENATsI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 136 TIAADGTISALNPGDP-PNTIAQIGRLKLVKADAREVMrGDDgLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPM 214
Cdd:PRK12693 150 TIGTDGTVSVTQAGQAaPQVVGQITLTDFINPAGLESI-GEN-LYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVV 227

                        250       260       270
                 ....*....|....*....|....*....|....
gi 505807180 215 ETMVDMIANARRFEMQMKVIHSVDENEQRANSLL 248
Cdd:PRK12693 228 EELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-228 5.56e-30

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 112.06  E-value: 5.56e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMgAARQTLEQQSIT-ANNLANASTPGFRAQLAALRAVPvdgpSLATRTLVAASTPGADM---SQGALNYTGR 76
Cdd:PRK12642   1 MQSGLYVAL-SSQMALEKRLDTiADNVANVNTVGFRATEVKFDTVV----SDTASKKVAFVSQGKSYlstEAGPLTKTGN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  77 PLDVALQQDGFLALSLPGGgEAYTRNGSIQVSANGQL-TVQGMP-LQGDGGPIEVPPSA-EITIAADGTISAlnpgdppN 153
Cdd:PRK12642  76 PLDFAVKGDAWFSFDTPAG-QVYTRDGRFTMTSTGELvSVTGYPvLDAGGAPIQLNPGGgEPTIGADGAIYQ-------N 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 154 TiAQIGRLKLVKADArevmrgDDGLFR-----LTPETQQRRgnlLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFE 228
Cdd:PRK12642 148 G-VQVGAIGLFEIDA------DAGLLRygnsgVIPDKPPQP---VVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFE 217
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-247 1.54e-26

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 103.62  E-value: 1.54e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   7 TAMGAARQTLEQQSitaNNLANASTPGFRAQLAAL----------RAVPV-DGPSLATRTLVAASTPGADMSQGALNYTG 75
Cdd:PRK12817  10 SGMNAQQEKLDSIS---NNLANVNTTGYKREDVSFsdlvyetldrKGYPTnDKPEIITGTGVKATNWIRDNQQGNLLTTG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  76 RPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQLT--------VQgmpLQGDGGPIEVPP---SAEITIAADGTIS 144
Cdd:PRK12817  87 NKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVddngnrleIQ---LEAGVGINNRNTgfdSNNFTVDEDGGIS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 145 ALNPGDPPNTIAQIGRLKLVKADAReVMRGDDgLFrltpetQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANA 224
Cdd:PRK12817 164 VKNVDGQNKKVGKINIYNAVGNDAF-ISIGDN-LY------VPSDGVQVFLNNDVDILQGYLENSNVDLGKEMTDMIITQ 235

                        250       260
                 ....*....|....*....|...
gi 505807180 225 RRFEMQMKVIHSVDENEQRANSL 247
Cdd:PRK12817 236 RAFQLSSKGIKTADEMWGIINNM 258
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-247 2.19e-25

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 100.65  E-value: 2.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAmgAARQTLEQQSI--TANNLANASTPGFRAQLAalravpvDGPSLATRTLVAASTPGADMS----------- 67
Cdd:PRK12816   1 MMRSLWTA--ASGMNAQQFNIdtIANNLANVNTTGFKKIRA-------EFEDLIYQTQRRAGTPATEDTvtplgvqvghg 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  68 -----------QGALNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQgdgGPIEVPPSAE- 134
Cdd:PRK12816  72 vkvaatqrlfeQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLvTSNGYRLL---PEIIFPENYIl 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 135 --ITIAADGTISA-LNPGDPPNTIAQIGRLKLVKADAREVMrgDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNV 211
Cdd:PRK12816 149 nsITISEEGIVSVkVGEDNDPIELGQIELYRFVNPAGLSAI--GKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNV 226

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 505807180 212 KPMETMVDMIANARRFEMQMKVIHSVDENEQRANSL 247
Cdd:PRK12816 227 SIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-239 9.67e-25

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 98.67  E-value: 9.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRavpvdgpSLATRTLVAASTPGAD--------------- 65
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFK-------DMVSQTISGASGPTANrggvnskqvglgsql 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  66 ------MSQGALNYTGRPLDVALQQDGFLALSlPGGGEAYTRNGSIQVSANGQL-TVQGMPLQG-DGGPIEVPPSAE-IT 136
Cdd:PRK12636  74 gaidtiHTQGSLQTTGRPLDLAISGDGFFRVG-DGDNTAYTRAGNFYLDNEGNIvNADGLYLLGmNGGRIQIPTDAQsFS 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 137 IAADGTISALNPGDPPNTIAQIGRLKLVKADAREvmRGDDGLFRLTPETqqrrGNLLANDPQV----RVMPGVLEGSNVK 212
Cdd:PRK12636 153 IGADGTVSYVDAGGELQTAGQIGLATFANPDGLE--KAGDNLYRETLNS----GTPSAVVPGEggtgKIVSGALEMSNVD 226

                        250       260
                 ....*....|....*....|....*..
gi 505807180 213 PMETMVDMIANARRFEMQMKVIHSVDE 239
Cdd:PRK12636 227 LAEEFTEMIVAQRGFQANTRIITTSDE 253
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-244 3.67e-21

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 88.99  E-value: 3.67e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   1 MDHAIYTAM-GAARQTLEQQSITaNNLANASTPGFRAQ----------LAALRAVPVDGPSLatRTLVAASTPGADM--- 66
Cdd:PRK12818   1 MIRGLYTAVsGMITLEAKQDVIT-NNLANVNTVGYKSDnlafksfedvLIENYDKKVGNKNV--KNIIGGLSMGSKIdev 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  67 ----SQGALNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL------TVQGMPLQ-GDGGPIEVPPSaEI 135
Cdd:PRK12818  78 ntlfTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLvndsgyYVLGRNNAtGAREPINVGNG-KF 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 136 TIAADGTISalnpgdppntIAQIGRLKLVKADARE---VMRGDDGLFRltpetqqrrGNLLANDPQVRVMPGVLEGSNVK 212
Cdd:PRK12818 157 STDADGNIS----------LDGNASYKFNVADFNDynsLKKIGDNLYT---------GNNPQNINGAIVRQNSLEKSNVN 217

                        250       260       270
                 ....*....|....*....|....*....|..
gi 505807180 213 PMETMVDMIANARRFEMQMKVIHSVDENEQRA 244
Cdd:PRK12818 218 VTNEMVNMMTTMRSFETNQKIVQSIDETLGKA 249
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 127-228 6.60e-21

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 83.83  E-value: 6.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  127 IEVPPSAEITIAADGTISALNpgdppntiAQIGRLKLVKADARE-VMRGDDGLFRLTPetqqrrGNLLANDPQVRVMPGV 205
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQDG--------EEVGRLGLVNFDNPNqLQREGDGLFRATG------GGPAPADSNVRVVQGY 66

                          90       100
                  ....*....|....*....|...
gi 505807180  206 LEGSNVKPMETMVDMIANARRFE 228
Cdd:TIGR02490  67 LEGSNVNAVSEMVDMIEAQRAYE 89
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 1.09e-18

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 77.69  E-value: 1.09e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505807180  169 REVMRGDDGLFRLTPETQQrrgnlLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDENEQRANSL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPI-----LGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 7-239 6.64e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 80.28  E-value: 6.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   7 TAMGAARQTLEqqsITANNLANASTPGF---RAQLAALRAVPVDGPSLATRTLVAASTPGADMS-------------QGA 70
Cdd:PRK12692   9 TGMSAQQLNLE---VIANNIANLNTTGFkgaRAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLGlgvraaairnlhrQGS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  71 LNYTGRPLDVALQQDGFLALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQgdgGPIEVPPSA-EITIAADGTISALNP 148
Cdd:PRK12692  86 LAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLvTMEGYAVD---PAILIPQNTtQVTINESGQVFAKID 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 149 GDppNTIAQIGRLKLVK-ADAREVMRGDDGLFRLTPETQQRRGNLLANDPQVRVMPGVLEGSNVKPMETMVDMIANARRF 227
Cdd:PRK12692 163 GQ--VAPQNLGQLTLANfANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAF 240

                        250
                 ....*....|..
gi 505807180 228 EMQMKVIHSVDE 239
Cdd:PRK12692 241 EMNSKVIQAADE 252
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
20-122 3.89e-17

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 79.83  E-value: 3.89e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  20 SITANNLANASTPGF---RAQLA-----ALRAVPVDGPSLATRtlVAASTpgADMSQGALNYTGRPLDVALQQDGFLALS 91
Cdd:COG1749   20 DVIGNNIANSNTVGFkssRAEFAdlvaqSLSGANPTQVGGGVR--VASVA--QIFTQGSLQSTGNALDLAISGNGFFVVS 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 505807180  92 LPGGGEAYTRNGSIQVSANGQL-TVQGMPLQG 122
Cdd:COG1749   96 DSGGQTYYTRAGSFSLDKDGYLvNSSGLYLQG 127
flgE PRK05682
flagellar hook protein FlgE; Validated
 20-129 3.88e-15

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 74.10  E-value: 3.88e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  20 SITANNLANASTPGF---RAQLAALRAvpvdgPSLATRTL-----VAASTPGADMSQGALNYTGRPLDVALQQDGFLALS 91
Cdd:PRK05682  18 DVIGNNIANANTTGFkssRAEFADLYA-----NSAGTNPTqvgsgVKVAGVAQQFSQGSITSTGNSLDLAISGNGFFVVS 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 505807180  92 LPGGGEaYTRNGSIQVSANGQLT------VQGMPLQGDGGPIEV 129
Cdd:PRK05682  93 NGGNGF-YTRAGAFKLDKNGYLVnaagyyLQGYPADADGGTPPT 135
flgE PRK06803
flagellar basal body protein FlaE;
8-122 5.31e-13

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 67.87  E-value: 5.31e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   8 AMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDGPSLATRtlVAASTPGADMSqGALNYTGRPLDVALQQDGF 87
Cdd:PRK06803   6 ALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVE--VSSVSQNFSKD-GSLTYTGRGLDLAISGGGF 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 505807180  88 LALSLPGGGEAYTRNGSIQVSANGQLTV-QGMPLQG 122
Cdd:PRK06803  83 FVLKESDGDTAYTRAGMFRSDVDGYLTDpQGMKLQG 118
flgG PRK12819
flagellar basal-body rod protein FlgG;
23-248 8.03e-12

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 63.36  E-value: 8.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  23 ANNLANASTPGFRAQLAALRAVPV-------DGPSLATRTLVAASTPGA---DMSQGALNYTGRPLDVALQ----QDGFL 88
Cdd:PRK12819  22 SNNVANAQTTGFKAENMTSKVFDVqdtyrrgDGAVTNIGSVDYAVVPAAthvNLVQGNIQMTNSDTDFFLDdgpaGTSSF 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  89 ALSLPGGGEAYTRNGSIQVSANGQL-TVQGMPLQGDGGP-IEVPPSAEITIAADGTisaLNPGDPPNTIAQIGRlKLVKA 166
Cdd:PRK12819 102 FVTSKNGETFLTRDGSFTLNSDRYLqTASGAFVMGENNErIRIPEGAKVAVQADGT---LYDAVTQNNIARLQT-KTVSA 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180 167 DARE-VMRGDDGLFRLTpetqqrRGNlLANDP--QVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDE-NEQ 242
Cdd:PRK12819 178 EQNDrLVQRENKSFTLA------EGN-IANLPngQGIVKNGMLENSNVDMTKEMADLMTDQRMIQASQRVMTSFDKiYEK 250


                 ....*.
gi 505807180 243 RANSLL 248
Cdd:PRK12819 251 EANEIL 256
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 6.46e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 39.09  E-value: 6.46e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 505807180    5 IYTAMGAARQTLEQQSITANNLANASTPGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgE PRK08425
flagellar hook protein FlgE; Validated
 24-117 2.36e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 41.99  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  24 NNLANASTPGFR----------AQLAALRAVPVDGP------SLATRTLVAASTpgADMSQGALNYTGRPLDVALQQDGF 87
Cdd:PRK08425  24 NNIANVNTTGFKysrasfvdmlSQTKLIATAPKGGLggqndmQIGLGVGVSSTT--KIFSQGSIQNTDKNTDLAIQGDGF 101

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 505807180  88 LALSlPGGG--EAYTRNGSIQVSANGQL------TVQG 117
Cdd:PRK08425 102 FIVS-PDGGttRNYTRDGDFKFDAQGNFvnnggyVVQG 138
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-37 6.68e-04

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 38.73  E-value: 6.68e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 505807180   1 MDHAIYTAMGAARQTL----EQQSITANNLANASTPGFRAQ 37
Cdd:COG1815    1 MSILFDKTFGLLEKALdlrsLRQEVIASNIANADTPGYKAR 41
flgB PRK12627
FlgB family protein;
7-37 1.72e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 37.40  E-value: 1.72e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 505807180   7 TAMGAARQTLEQQSITANNLANASTPGFRAQ 37
Cdd:PRK12627  10 MASAMARHAGERQAVVARNVANADTPGYRAR 40
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 15-72 2.89e-03

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 36.98  E-value: 2.89e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505807180   15 TLEQQSITANNLANASTPGFRAQ---LAALRAVPVDGPSLATRTLVAASTPGADMSQGALN 72
Cdd:TIGR01396  15 RSLRQEVIANNIANVDTPGYKAKdvsFEAELKKALDNERNSKLTLARTDTRPRHLNAQDSN 75
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 4-48 7.84e-03

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 36.94  E-value: 7.84e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 505807180    4 AIYTAMGAARQTLEQQSITANNLANASTPGFRAQLAALRAVPVDG 48
Cdd:TIGR02492   2 LLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVPAGG 46
flgE PRK12637
flagellar hook protein FlgE; Provisional
 7-152 9.62e-03

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 37.04  E-value: 9.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180   7 TAMGAARQTLEqqsITANNLANASTPGFRAQLAALRAVPVdgpSLATRTLVAASTPGADMSQGALNYTGRPLDVALQQ-D 85
Cdd:PRK12637   8 SGLNAASQNLD---VIGNNIANSGTVGFKSGAASFADVYA---SSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGgK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505807180  86 GFLALSLPGGGEAYTRNGSIQVSANGQLT------VQGMPLQGDGG--------PIEVPPSAEITIAADGTISA----LN 147
Cdd:PRK12637  82 GFFRLTDQSGGVFYSRNGEFMVDKNFYIVnaqgfrLTGYPAGGVGAqpvdlqlpQGNIAPQATSTAGLQTNLNAnakvID 161


                 ....*
gi 505807180 148 PGDPP 152
Cdd:PRK12637 162 PNDTP 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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