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Conserved domains on  [gi|505961830|ref|WP_015729316|]
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MAP domain-containing protein [Staphylococcus pseudintermedius]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAP super family cl04193
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 150-237 8.72e-15

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


The actual alignment was detected with superfamily member pfam03642:

Pssm-ID: 367591  Cd Length: 87  Bit Score: 67.41  E-value: 8.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505961830  150 PYTVTIDGQTAYVQSFLNISNKNVTNFYQLNQKVKSALNNEYQLSNKDINRAKTAKYTVTWNNGKKQTINLKSHAQLPgN 229
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSNIYTA-N 79


                  ....*...
gi 505961830  230 QISGKDIK 237
Cdd:pfam03642  80 LFDASDIK 87
MAP super family cl04193
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 44-117 4.51e-12

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


The actual alignment was detected with superfamily member pfam03642:

Pssm-ID: 367591  Cd Length: 87  Bit Score: 60.48  E-value: 4.51e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505961830   44 PYSTTIDGATPFVQSYLKLSNENVSNFKQLNQKVKSTLKQDYKISATQIEKSKTAQYTVTWKNGKKQTISLKND 117
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSN 74
 
Name Accession Description Interval E-value
MAP pfam03642
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 150-237 8.72e-15

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


Pssm-ID: 367591  Cd Length: 87  Bit Score: 67.41  E-value: 8.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505961830  150 PYTVTIDGQTAYVQSFLNISNKNVTNFYQLNQKVKSALNNEYQLSNKDINRAKTAKYTVTWNNGKKQTINLKSHAQLPgN 229
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSNIYTA-N 79


                  ....*...
gi 505961830  230 QISGKDIK 237
Cdd:pfam03642  80 LFDASDIK 87
MAP pfam03642
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 44-117 4.51e-12

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


Pssm-ID: 367591  Cd Length: 87  Bit Score: 60.48  E-value: 4.51e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505961830   44 PYSTTIDGATPFVQSYLKLSNENVSNFKQLNQKVKSTLKQDYKISATQIEKSKTAQYTVTWKNGKKQTISLKND 117
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSN 74
 
Name Accession Description Interval E-value
MAP pfam03642
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 150-237 8.72e-15

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


Pssm-ID: 367591  Cd Length: 87  Bit Score: 67.41  E-value: 8.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505961830  150 PYTVTIDGQTAYVQSFLNISNKNVTNFYQLNQKVKSALNNEYQLSNKDINRAKTAKYTVTWNNGKKQTINLKSHAQLPgN 229
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSNIYTA-N 79


                  ....*...
gi 505961830  230 QISGKDIK 237
Cdd:pfam03642  80 LFDASDIK 87
MAP pfam03642
MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP ...
 44-117 4.51e-12

MAP domain; This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.


Pssm-ID: 367591  Cd Length: 87  Bit Score: 60.48  E-value: 4.51e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505961830   44 PYSTTIDGATPFVQSYLKLSNENVSNFKQLNQKVKSTLKQDYKISATQIEKSKTAQYTVTWKNGKKQTISLKND 117
Cdd:pfam03642   1 PYTIAVNGTSANILSYLVFPNNSKISYKDLSSKVKSVLKSDRGITDEDIRLAKQAVYTVYFKNGSKKVVDLKSN 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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