|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
37-821 |
1.04e-172 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 522.10 E-value: 1.04e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 37 FMPPQQKINQGLDIQGGLSVVL-TANSTTGEAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEA 115
Cdd:PRK13024 24 PKFVTKNINLGLDLQGGFEVLLeVSPADKGKKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 116 LNTIGKTGKLEFarldsftdedvrqkiengQLTQGSTTVSDAYGNQLPAETTQPLTVEEgtytPIVTGSNIERVTVDRAS 195
Cdd:PRK13024 104 RELLGSTAKLTF------------------RDVTDPPPPGVGGPVVGPDEGKDTAVLNP----VLLSGDDLTDAGAKFDQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 196 SGGGlYYAVNLQLDADGTKAFADASRDLAPTHGK---IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLE 272
Cdd:PRK13024 162 DQTN-RPSVSLKLKSEGAKKWAKVTEKNSKKGPPnnrIAIVLDPKVISAPTVNQPINGGSVQISGNFTVEEAKDLANLLN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 273 SGSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLYLGLLATLShfglFSL 352
Cdd:PRK13024 241 AGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLG----AVL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 353 SLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTL 432
Cdd:PRK13024 317 TLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 433 ALGIMCDIVMMLLFkapiIRLLAPHAI---AKHPGFWGVKDSQAASKVYGRLaaaegemvetavsaeainsaeseayasr 509
Cdd:PRK13024 397 IIGILASLFTAVFL----TRLLLELLVkrgDKKPFLFGVKKKKIHNINEGVT---------------------------- 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 510 kggaegteaaqaaskvrgrfIKHDINFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTSIEFNETGSVTTDQVR 589
Cdd:PRK13024 445 --------------------IFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVR 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 590 SAFAAAGESDAVIQTTESNGEpGFIVR---IANTDASAAAGAATQVAQSLN--LSTDSFQVSTIGPDWGASIIQSMVIAL 664
Cdd:PRK13024 505 ADLKELGLGEVNIVTFGSDNN-QVLVRtygILSDDEEADTEIVAKLKNALKndKGGTIPSSETVGPTVGKELARNAIIAV 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 665 LVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEI 744
Cdd:PRK13024 584 LIALIGILLYILIRFEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKK 663
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506259029 745 KcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIWKTREPKN 821
Cdd:PRK13024 664 K-DLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKK 739
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
33-465 |
1.11e-119 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 372.53 E-value: 1.11e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 33 SVVMFMPPQQKINQGLDIQGGLSVVLTA--------NSTTGEAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILV 104
Cdd:COG0342 20 SLVAPNGPAKPIKLGLDLQGGVHLLLEVdtdaaldeDGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 105 QIPGLSDTQEALNTIGKTGKLEFARLDSFTDEDvrqkienGQLTQGSTTVSDAYGNQLPAEttqpltveegtYTPIVTGS 184
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQ-------AAVPAGSELLPCRDGQPYLLL-----------GPVVLTGD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 185 NIERVTVDRASSGGGlyYAVNLQLDADGTKAFADASRDLApthGK-IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQ 263
Cdd:COG0342 162 DLTDASAGFDQQTGQ--PVVSFTLDSEGAKKFADATRENV---GKpLAIVLDGEVISAPVIQEPITGGSAQITGSFTVEE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 264 ANGLKTVLESGSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLYLGLLAT 343
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 344 LShfglFSLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASS 423
Cdd:COG0342 317 LG----ATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTG 392
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 506259029 424 GVKGFGLTLALGIMCDIVMMLLFKAPIIRLLAPHAIAKHPGF 465
Cdd:COG0342 393 PVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
47-451 |
1.23e-86 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 283.79 E-value: 1.23e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 47 GLDIQGGLSVVLTANSTTG----------EAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEAL 116
Cdd:TIGR01129 2 GLDLRGGARVLLEVDMSTAvvlklseaevNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 117 NTIGKTGKLEF-ARLDSFTDEDvrqKIENGQLTQGSTTVSDaYGNQLPAETTQPltveegtyTPIVTGSNIERVTVDRAS 195
Cdd:TIGR01129 82 DILGGTATLEFrLVDDESTSPD---DALAGNVPAGSELLDS-RSGDPKYYLLKK--------SPVLTGDHITDATSSVDQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 196 SGGGlyYAVNLQLDADGTKAFADASRDLAPThgKIVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESGS 275
Cdd:TIGR01129 150 RSGQ--PVVSFSLDSEGARIFGDFTQANIGK--RLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 276 LPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgLLATLSHFGlFSLSLA 355
Cdd:TIGR01129 226 LPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVL---ILAILSAFG-ATLTLP 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 356 GVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALG 435
Cdd:TIGR01129 302 GIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIG 381
|
410
....*....|....*.
gi 506259029 436 IMCDIVMMLLFKAPII 451
Cdd:TIGR01129 382 IIASLFTALVFTRLLL 397
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
644-817 |
2.10e-59 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 201.30 E-value: 2.10e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 644 QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGY 723
Cdd:pfam02355 17 SIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 724 SLYDTVVVFHRISDNMQHSEIKcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSS 803
Cdd:pfam02355 97 SVNDTVVVFDRVRENLRKKTRA-TLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSS 175
|
170
....*....|....
gi 506259029 804 IAIACPLFAIWKTR 817
Cdd:pfam02355 176 IFIASPILLDLGER 189
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
631-807 |
4.26e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 57.48 E-value: 4.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 631 QVAQSLNLSTDSF-----QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAirFEYKM-GITAIIALLHDIILVVGVYAL 704
Cdd:NF037998 413 TIEALINQTTSGFtfkvnGISEFNPVVTLLMLIASIIFLLILAIAIMIYLL--FAYRLlGLFAIIIALTSISLTLYSPTW 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 705 VGREINPNTIAALLTILGYSLYDTVVVFHRISDNM---QHSEIkcTFMTMANHSMNQVFmrsINTTLTSIIPVLAMLLFG 781
Cdd:NF037998 491 FGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyknKRSIE--ESFKIANKETIGII---VDALVVLLIPNLSLFWIG 565
|
170 180
....*....|....*....|....*.
gi 506259029 782 SETLKDFAFAMTIGLLAGAYSSIAIA 807
Cdd:NF037998 566 SNSIKSFATILLVGVIISLVLVIIVA 591
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
325-454 |
1.70e-07 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 55.55 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 325 ITAAAMAVFAVLY---LGLLATLSHFG-----LFSLSLAGVA-------GIVLTIGMAADSSILTLERFREEI-RFGRSI 388
Cdd:NF037998 453 ILAIAIMIYLLFAyrlLGLFAIIIALTsisltLYSPTWFGLAigpesitAIFIAIGLVLESCSLLFEAFKKHLyKNKRSI 532
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 506259029 389 RAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454
Cdd:NF037998 533 EESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLT 598
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
657-738 |
7.48e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 40.15 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 657 IQSMVIALLVSFVLIIIYIAIRFEYK----MGITAIIALLHDIILVVGVYALVGREInpntIAALLTILGYSLYDTVVVF 732
Cdd:NF037998 956 ILQIAISFAIILLALIVYILIRFKWTyyvaLALAIVFAPAITVSIVIIFRVPITFEI----LIAFVSIIGFAIASAIIIL 1031
|
....*.
gi 506259029 733 HRISDN 738
Cdd:NF037998 1032 GKAKSL 1037
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
37-821 |
1.04e-172 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 522.10 E-value: 1.04e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 37 FMPPQQKINQGLDIQGGLSVVL-TANSTTGEAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEA 115
Cdd:PRK13024 24 PKFVTKNINLGLDLQGGFEVLLeVSPADKGKKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 116 LNTIGKTGKLEFarldsftdedvrqkiengQLTQGSTTVSDAYGNQLPAETTQPLTVEEgtytPIVTGSNIERVTVDRAS 195
Cdd:PRK13024 104 RELLGSTAKLTF------------------RDVTDPPPPGVGGPVVGPDEGKDTAVLNP----VLLSGDDLTDAGAKFDQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 196 SGGGlYYAVNLQLDADGTKAFADASRDLAPTHGK---IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLE 272
Cdd:PRK13024 162 DQTN-RPSVSLKLKSEGAKKWAKVTEKNSKKGPPnnrIAIVLDPKVISAPTVNQPINGGSVQISGNFTVEEAKDLANLLN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 273 SGSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLYLGLLATLShfglFSL 352
Cdd:PRK13024 241 AGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLG----AVL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 353 SLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTL 432
Cdd:PRK13024 317 TLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 433 ALGIMCDIVMMLLFkapiIRLLAPHAI---AKHPGFWGVKDSQAASKVYGRLaaaegemvetavsaeainsaeseayasr 509
Cdd:PRK13024 397 IIGILASLFTAVFL----TRLLLELLVkrgDKKPFLFGVKKKKIHNINEGVT---------------------------- 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 510 kggaegteaaqaaskvrgrfIKHDINFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTSIEFNETGSVTTDQVR 589
Cdd:PRK13024 445 --------------------IFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVR 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 590 SAFAAAGESDAVIQTTESNGEpGFIVR---IANTDASAAAGAATQVAQSLN--LSTDSFQVSTIGPDWGASIIQSMVIAL 664
Cdd:PRK13024 505 ADLKELGLGEVNIVTFGSDNN-QVLVRtygILSDDEEADTEIVAKLKNALKndKGGTIPSSETVGPTVGKELARNAIIAV 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 665 LVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEI 744
Cdd:PRK13024 584 LIALIGILLYILIRFEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKK 663
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506259029 745 KcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIWKTREPKN 821
Cdd:PRK13024 664 K-DLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKK 739
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
33-465 |
1.11e-119 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 372.53 E-value: 1.11e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 33 SVVMFMPPQQKINQGLDIQGGLSVVLTA--------NSTTGEAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILV 104
Cdd:COG0342 20 SLVAPNGPAKPIKLGLDLQGGVHLLLEVdtdaaldeDGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 105 QIPGLSDTQEALNTIGKTGKLEFARLDSFTDEDvrqkienGQLTQGSTTVSDAYGNQLPAEttqpltveegtYTPIVTGS 184
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQ-------AAVPAGSELLPCRDGQPYLLL-----------GPVVLTGD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 185 NIERVTVDRASSGGGlyYAVNLQLDADGTKAFADASRDLApthGK-IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQ 263
Cdd:COG0342 162 DLTDASAGFDQQTGQ--PVVSFTLDSEGAKKFADATRENV---GKpLAIVLDGEVISAPVIQEPITGGSAQITGSFTVEE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 264 ANGLKTVLESGSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLYLGLLAT 343
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 344 LShfglFSLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASS 423
Cdd:COG0342 317 LG----ATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTG 392
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 506259029 424 GVKGFGLTLALGIMCDIVMMLLFKAPIIRLLAPHAIAKHPGF 465
Cdd:COG0342 393 PVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
76-817 |
7.78e-115 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 373.29 E-value: 7.78e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 76 SRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEALNTIGKTGKLEFARLDSftdedvrqkiengqltqgSTTVS 155
Cdd:PRK14726 166 SIEVVRRRVAELGTTEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDS------------------SMPAQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 156 DAYGNQLPAETT---------QPLTVEEgtyTPIVTGSNI--ERVTVDRASSGGglyyAVNLQLDADGTKAFADAsrdLA 224
Cdd:PRK14726 228 EALNGRPPATSEvlyslddppVPYLVER---RAFVSGENLvdAQPVFDPQTNEP----VVTFRLDAEGTQRFAQA---TQ 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 225 PTHGK-IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESGSLPVSFSYAQSQTVGPTLGQDALSSGVLV 303
Cdd:PRK14726 298 QNVGKhFAIVLDGQVISAPVIDEAITGGEGRISGNFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVA 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 304 ALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgLLATLSHFGLfSLSLAGVAGIVLTIGMAADSSILTLERFREEIR 383
Cdd:PRK14726 378 GLIAAILVAALMIGFYGFLGVIAVIALIVNVVL---IIAVLSLLGA-TLTLPGIAGIVLTIGMAVDSNVLIYERIREEEK 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 384 FGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLLAPHAIAKHp 463
Cdd:PRK14726 454 TGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKH- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 464 gfwgvkdsqaaskvygrlaaaegemvetavsaeainsaeseayasrkggaegteaaQAASKVRGRFIKHDINFLGARKVF 543
Cdd:PRK14726 533 --------------------------------------------------------LPKGVRTGLFEGANIRFMGIRRYV 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 544 LSIAALAMVLCALVIGVRGLNLGIEFVGGTSIEFN-ETGSVTTDQVRSAFAAAGESDavIQTTESNGEPGFIVRIANTDA 622
Cdd:PRK14726 557 FTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRaKQGNADIADIRARLNELNLGE--VQVERFGSPRDALIRIASQDG 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 623 --SAAAGAATQVAQSLNLSTDSFQVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVG 700
Cdd:PRK14726 635 geNAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIATLHDVILTLG 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 701 VYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEiKCTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLF 780
Cdd:PRK14726 715 LFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYK-KMPLPILIDASINQTLSRTVLTSATTLLALLALYLF 793
|
730 740 750
....*....|....*....|....*....|....*..
gi 506259029 781 GSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIWKTR 817
Cdd:PRK14726 794 GGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIVFKLR 830
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
529-817 |
5.06e-114 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 352.05 E-value: 5.06e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 529 FIKHDINFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTSIEFNETGSVTTDQVRSAFAAAGESDAVIQTTESN 608
Cdd:COG0341 4 PGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 609 GEpgFIVRIANTDASAAAGAaTQVAQSLNLSTDSF---QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGI 685
Cdd:COG0341 84 ND--VLIRTPPLDGESAEEV-EKVRAALKEAFGDVeivRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 686 TAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEiKCTFMTMANHSMNQVFMRSIN 765
Cdd:COG0341 161 GAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYR-KMTLAEIINLSINQTLSRTIN 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 506259029 766 TTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIWKTR 817
Cdd:COG0341 240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
36-454 |
8.89e-94 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 304.84 E-value: 8.89e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 36 MFMPPQQKINQGLDIQGGLSVVLTANSTTG-------------------------------------------------- 65
Cdd:PRK05812 33 LPALGAKPMKLGLDLRGGVHFLLEVDMDDAlkkrlesladdlrsllrekkiryggveitfrdaedrdkaiallrklsslt 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 66 ----EAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEALNTIGKTGKLEFaRLdsftdedVRqk 141
Cdd:PRK05812 113 eaelKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEF-RL-------VP-- 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 142 iengqltqgsttvsdaygnqlpaettqpltveegtytPIVTGSNIERVTVDRASSGGglyYAVNLQLDADGTKAFADASR 221
Cdd:PRK05812 183 -------------------------------------VILTGDDITDASASFDQQGQ---PVVNITLDSEGAKKFADITK 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 222 DLApthGK-IVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESGSLPVSFSYAQSQTVGPTLGQDALSSG 300
Cdd:PRK05812 223 ANI---GKrMAIVLDGEVISAPVIQSAITGGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAG 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 301 VLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgLLATLSHFGlFSLSLAGVAGIVLTIGMAADSSILTLERFRE 380
Cdd:PRK05812 300 LIAGLIGLALVLLFMILYYRLFGLIANIALVANLVL---ILAVLSLLG-ATLTLPGIAGIVLTIGMAVDANVLIFERIRE 375
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506259029 381 EIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454
Cdd:PRK05812 376 ELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLL 449
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
47-451 |
1.23e-86 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 283.79 E-value: 1.23e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 47 GLDIQGGLSVVLTANSTTG----------EAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEAL 116
Cdd:TIGR01129 2 GLDLRGGARVLLEVDMSTAvvlklseaevNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 117 NTIGKTGKLEF-ARLDSFTDEDvrqKIENGQLTQGSTTVSDaYGNQLPAETTQPltveegtyTPIVTGSNIERVTVDRAS 195
Cdd:TIGR01129 82 DILGGTATLEFrLVDDESTSPD---DALAGNVPAGSELLDS-RSGDPKYYLLKK--------SPVLTGDHITDATSSVDQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 196 SGGGlyYAVNLQLDADGTKAFADASRDLAPThgKIVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESGS 275
Cdd:TIGR01129 150 RSGQ--PVVSFSLDSEGARIFGDFTQANIGK--RLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 276 LPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgLLATLSHFGlFSLSLA 355
Cdd:TIGR01129 226 LPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVL---ILAILSAFG-ATLTLP 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 356 GVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALG 435
Cdd:TIGR01129 302 GIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIG 381
|
410
....*....|....*.
gi 506259029 436 IMCDIVMMLLFKAPII 451
Cdd:TIGR01129 382 IIASLFTALVFTRLLL 397
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
562-807 |
7.27e-75 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 246.03 E-value: 7.27e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 562 GLNLGIEFVGGTSIEFNETGSVTTDQVRSAFAAAGESDAVIQTTESNGEpgFIVRIANTDASAAAGAATQVAQSLNLSTD 641
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHT--IMIRIPTLDTEQSEELREALEEALKNVDP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 642 SFQV---STIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALL 718
Cdd:TIGR00966 79 DAEIrsiDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 719 TILGYSLYDTVVVFHRISDNMQHSEIKcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLA 798
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRK-TFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIV 237
|
....*....
gi 506259029 799 GAYSSIAIA 807
Cdd:TIGR00966 238 GTYSSIFIA 246
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
40-819 |
1.45e-71 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 252.62 E-value: 1.45e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 40 PQQKINQGLDIQGGLSVVLTANSTTgeavtSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEALNTI 119
Cdd:PRK13023 41 PKKQVSLGLDLSGGSRLILQVQNAG-----KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDIL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 120 GKTGKLEFARLDSFTDEDvrqkiengqltqgsttvsDAYGNQLPAETTQPLTVEEGTY------TPIVTGSNIERVTVDR 193
Cdd:PRK13023 116 TIRGNLSFRAMDDTMSPD------------------DAIRGTPPADSEIVYSFDDPPVgyllkkTPILTGHDITDAKASI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 194 ASSGGglYYAVNLQLDADGTKAFADASRDLapTHGKIVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLES 273
Cdd:PRK13023 178 SADDG--QPVITLTLDDNGRRRLADLTAQG--NENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRS 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 274 GSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgLLATLSHFGLfSLS 353
Cdd:PRK13023 254 GALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIII---LTAVLSLIGA-SIS 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 354 LAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLA 433
Cdd:PRK13023 330 LASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVA 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 434 LGIMCDIVMMLLFKAPIIrllaphaiakhpgfwgvkdsqaaskvygrlaaaegemvetavsAEAINSAESEAYASRKGGA 513
Cdd:PRK13023 410 IGIGTTLFTTLTFTRLLI-------------------------------------------AQWVRTAKPKEVPKRRLKL 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 514 EGTeaaqaaskvrgrfIKHdINFLGARKVFLSIAALAmvlCALVIGVR---GLNLGIEFVGGTSIEFN-ETGSVTTDQVR 589
Cdd:PRK13023 447 VPT-------------VTH-IPFMRLQFVTLGISVLA---CAIVVALFvniGFNYGIDFRGGSMVELQaRNGDANLEDIN 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 590 SAFAAAGESDAVIQTTESNGEPgfIVRIANTDASAAAGAATQVAQSLNLSTD-SFQ-VSTIGPDWGASIIQSMVIALLVS 667
Cdd:PRK13023 510 ERLAELNIDSARVLPAKSPRSA--LVIIGSQEVGDDAEQTVAVKLRGEFEQDySFQrVDVVGPTVSEQLSRAGVLAVILS 587
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 668 FVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEiKCT 747
Cdd:PRK13023 588 LIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYK-SAP 666
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506259029 748 FMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIW--KTREP 819
Cdd:PRK13023 667 LPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFglKPRET 740
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
644-817 |
2.10e-59 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 201.30 E-value: 2.10e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 644 QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGY 723
Cdd:pfam02355 17 SIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 724 SLYDTVVVFHRISDNMQHSEIKcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSS 803
Cdd:pfam02355 97 SVNDTVVVFDRVRENLRKKTRA-TLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSS 175
|
170
....*....|....
gi 506259029 804 IAIACPLFAIWKTR 817
Cdd:pfam02355 176 IFIASPILLDLGER 189
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
47-821 |
6.01e-48 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 186.60 E-value: 6.01e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 47 GLDIQGGLSVVLTANSTTGEAVT-SEDMDISRDIIESRVNALGASEATVQKQGSNqILVQIPGLSDTQEAlnTIGKTGKL 125
Cdd:PRK12911 581 GIDFVGGKQIRLAFKDHQGKQLTdKEGILKVSDELYARLNKLGVSEVEMRREGDH-IHLSVPGSAGISSA--EILGTSKM 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 126 EF---------------------------AR-LDSFTDEDVRQ---KIENGQLTQGSTTVSDAYG-------NQLPAETT 167
Cdd:PRK12911 658 SFhvvneqfssysalryevqrfldylwftARsQDKTSPEAINRlasALFNGDEGSAPASVREAVTklkeeglAFSKSGLE 737
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 168 QPLTVEEGTYTPIVTGSNIER-------VTVDRASSGGGLY-----------YAVNLQLDadgTKAFADASRDLAPTHG- 228
Cdd:PRK12911 738 GGSASLDTTYSMIAIEKDSEEkanplmiVFRNYALDGASLKnirpefavgegYVLNFSVK---DTATFSDARELSPTESf 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 229 --------------------------KIVIILDGQVNSAPAVQSEITGgKVEITGNYTQDQANGLKTVLESGSLPVSFSY 282
Cdd:PRK12911 815 hawtsaycqegvsgtkngqfsggrgwRMAVVLDGYVVSDPVLNVPLKD-HASVSGKFSHREVHRLATDLKSGAMSFVPEV 893
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 283 AQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMItaAAMAVFAVLYLgLLATLSHFGLfSLSLAGVAGIVL 362
Cdd:PRK12911 894 LSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVI--ASGAVLLNLLL-IWAALQYLDA-PLTLSGLAGIVL 969
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 363 TIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIvM 442
Cdd:PRK12911 970 AMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSM-F 1048
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 443 MLLFKAPIIRLLaphaiakhpgfWgVKDSQaaskvygrlaaaegemvETAVsaeainsaeseayasrkggaegteaaQAA 522
Cdd:PRK12911 1049 TALFMTKFFFMI-----------W-MNKTQ-----------------ETQL--------------------------HMM 1073
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 523 SKVRGrfIKHDinFLGARKVFLSIAALAMVLCALVIGVRGLN--LGIEFVGGTSIEFN--ETGSVTTDQVRSA----FAA 594
Cdd:PRK12911 1074 NKFIG--IKHD--FLKECKRLWVVSGSVLVLGCVALGFGAWNsvLGMDFKGGYALTLDpsDVCEYDVEQMRSKlrkkFQQ 1149
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 595 AGES--DAVIQTTESNGE------PGFIVRIANTDASAAAGAATQVAQSLNL--------STDSFQVS-----TIGPDWG 653
Cdd:PRK12911 1150 IGLSsrDFRIRTFDSSEKikiyfsQNALDRVEAIEGAGSEQSDHHLALVLGVlsdtgsdtSSEVFDATqnfwfKVSGQLS 1229
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 654 ASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDI-----ILVVGVYALVGREINPNTIAALLTILGYSLYDT 728
Cdd:PRK12911 1230 NKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAICALIHDLlatcaVLVALHFFLQKIQIDLQAIGALMTVLGYSLNNT 1309
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 729 VVVFHRISDNMQhsEIKCTFM-TMANHSMNQVFMRSINTTLTSIiPVLAMLLF-GSETLKDFAFAMTIGLLAGAYSSIAI 806
Cdd:PRK12911 1310 LIIFDRIREDRQ--EKLFTPMpILINDALQKTLGRTVMTTATTL-SVLLILLFvGGGSIFNFAFIMTIGILLGTLSSLYI 1386
|
890
....*....|....*
gi 506259029 807 ACPLFAIWKTREPKN 821
Cdd:PRK12911 1387 APPLLLFMVRKEERN 1401
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
645-804 |
1.56e-47 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 167.82 E-value: 1.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 645 VSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYS 724
Cdd:TIGR00916 34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 725 LYDTVVVFHRISDNMQHSEIKcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSI 804
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGR-TFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
534-810 |
4.37e-43 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 158.87 E-value: 4.37e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 534 INFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTSIEFNETGSVTTDQVRSAFAAAGESD-AVIqtteSNGEPG 612
Cdd:PRK13021 4 INLTKWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEvSVI----SASEPG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 613 -FIVRIANTDASAAAGAATQVAQSLNLSTDSFQVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIAL 691
Cdd:PRK13021 80 rWVLRYAPADTAQSNVDIQQALAPLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 692 LHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQhSEIKCTFMTMANHSMNQVFMRSINTTLTSI 771
Cdd:PRK13021 160 VHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLI-AKPKLAIQEINNQAIVATFSRTMVTSGTTL 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 506259029 772 IPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPL 810
Cdd:PRK13021 239 MTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSL 277
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
51-437 |
6.43e-42 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 162.93 E-value: 6.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 51 QGGLSVVLTANSTTgeAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQIPGLSDTQEALNTIGKTGKLEFArl 130
Cdd:PRK12933 212 DRGLQLKLSQQEKT--KFRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFY-- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 131 dsftdeDVRQKiengqltqgsttvSDAYGNQLPAETTQPLTVEEgtyTPIVTGSNIervtVD-RASSGGGLYYAVNLQLD 209
Cdd:PRK12933 288 ------EVKES-------------GSVNAKVLKDKNGRPVYVAR---RPVLGGEHI----VDaRASLGEMGMAEVNISLD 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 210 ADGTKAFADASRD-----LAPTH--------GKIViiLDGQVNSAPAVQSEItGGKVEITGNYTQDQANGLKTVLESGSL 276
Cdd:PRK12933 342 RAGGKKMSDFSRDnigkpMATSYseysrdeqGKTK--QSEEVISVATIQSQL-GDRFRITGAGSYQEAQQLALLLRAGSL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 277 PVSFSYAQSQTVGPTLGQDALSSGvLVALA-GLVLVMLYLLVFYHGLGMITAAAMAVFAVLYLGLLATLSHFglfSLSLA 355
Cdd:PRK12933 419 TAPVTIVEERTIGPSLGAENIENG-FAALAlGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGA---VLTLP 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 356 GVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALG 435
Cdd:PRK12933 495 GIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLG 574
|
..
gi 506259029 436 IM 437
Cdd:PRK12933 575 LL 576
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
32-436 |
1.03e-25 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 111.12 E-value: 1.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 32 GSVVMFMPPQQK------INQGLDIQGGLSVVLTANSttgeAVTSEDMDISRDIIESRVNALGASEATVQKQGSNQILVQ 105
Cdd:PRK08343 22 ASIVAIFPPGGGpggftnLQYGLDLSGGSWIQLKLEG----PVTQETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 106 IPGlSDTQEALNTIGKTGKLEfarldsftdedvrqkIENGQLTQGSTTVsdaygnqlpaettqpltveegtytpiVTGSN 185
Cdd:PRK08343 98 VPG-VDADTAKEIIEKQGVFE---------------ARIQTPGNNNETV--------------------------LTGDD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 186 IERVTVDRASSGGGLYYaVNLQLDADGTKAFADASRDLA----PTHGKIVIILDGQVNSAPAVQSEITGGKVE------- 254
Cdd:PRK08343 136 IESVGSPSQDPSGGAWG-VPFTLSEDGAEKFAEVAKGKGatddPSGHPLDMYLDGELIYAAPLSPDLASGLASgpvvitv 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 255 ---ITGNYTQDQANGLKTVLESGSLPVSFSYAQSQTVGPTLGQD----ALSSGVLVALAglvlvmLYLLVFYH------G 321
Cdd:PRK08343 215 gstGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQfkkgSLIAGLLALLA------VALVVFLRyrepriA 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 322 LGMITAAAMAVfaVLYLGlLATLSHfglFSLSLAGVAGIVLTIGMAADSSI------LTLERFREEIRFGRSI-RAASIt 394
Cdd:PRK08343 289 LPMVITSLSEV--IIILG-FAALIG---WQLDLASIAGIIAVIGTGVDDLIiitdevLHEGKVPSRKVFLSRIkRAFFI- 361
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 506259029 395 gvrhgiqtsIDADLVSLVTALS-LFFLASSGVKGFGLTLALGI 436
Cdd:PRK08343 362 ---------IFAAAATTIAAMSpLAVMGLGDLKGFAITTILGV 395
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
286-441 |
3.44e-24 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 100.79 E-value: 3.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 286 QTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLYlgLLATLSHFGlFSLSLAGVAGIVLTIG 365
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVIL--ILGVLSLFG-ATLTLPGIAGLLTIIG 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 506259029 366 MAADSSILTLERFREEIRF--GRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIV 441
Cdd:TIGR00916 112 YSVDDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTY 189
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
546-798 |
3.54e-17 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 83.06 E-value: 3.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 546 IAALAMVLCALVIGVRGLNLGIEFVGGTSIEFnETGSVTTDQVRSAFAAAGESDAVIQTTEsngepGFIVRIA---NTDA 622
Cdd:PRK08578 25 LLSLLLLGGTFATTGSPVKLGIDFTGGTEITI-QTNDASPDELESALSGEPGVDVRKGSGN-----GYIITFGsgdDTDV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 623 SAAAGAATQVAQSLNLSTDSFQVSTIGPDWGASIIQSMVIALLVSFVL--IIIYIAIRfEYKMGITAIIALLHDIILVVG 700
Cdd:PRK08578 99 DKLADAVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIGmaVVVFLIFR-TPVPSLAVILSAFSDIIIALA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 701 VYALVGREINPNTIAALLTILGYS-----LYDTVV------VFHRISDNMQhseikcTFMTManhsmnqvfmrsintTLT 769
Cdd:PRK08578 178 LMNLFGIELSLATVAALLMLIGYSvdsdiLLTTRVlkrrgtFDESIKRAMR------TGITM---------------TLT 236
|
250 260 270
....*....|....*....|....*....|...
gi 506259029 770 SIIPVLAMLL----FGSETLKDFAFAMTIGLLA 798
Cdd:PRK08578 237 TIAAMAVLYIvstiPQAEVLANIAAVLIFGLLA 269
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
647-811 |
5.50e-13 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 71.93 E-value: 5.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 647 TIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEyKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLY 726
Cdd:TIGR01129 237 TIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYR-LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVD 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 727 DTVVVFHRISDNMQHSEikcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAI 806
Cdd:TIGR01129 316 ANVLIYERIKEELRLGK---SVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVF 392
|
....*
gi 506259029 807 ACPLF 811
Cdd:TIGR01129 393 TRLLL 397
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
647-820 |
3.52e-11 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 67.44 E-value: 3.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 647 TIGPDWGASIIQSMVIALLVSFVLIIIYIaIRFEYKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLY 726
Cdd:PRK14726 361 TVGPGLGADSIAAGLVAGLIAAILVAALM-IGFYGFLGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVD 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 727 DTVVVFHRISDNMQHSEikcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAI 806
Cdd:PRK14726 440 SNVLIYERIREEEKTGH---SLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTL 516
|
170
....*....|....*
gi 506259029 807 ACPLFAIW-KTREPK 820
Cdd:PRK14726 517 TRSLVAVWlRRRRPK 531
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
635-824 |
1.77e-10 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 64.48 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 635 SLNLSTDSFQVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAirFEYKM-GITAIIALLHDIILVVGVYALVGREINPNT 713
Cdd:PRK05812 274 ALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMI--LYYRLfGLIANIALVANLVLILAVLSLLGATLTLPG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 714 IAAL-LTIlGYSLYDTVVVFHRISDnmqhsEIK--CTFMTmanhSMNQVFMRSINTTL----TSIIPVLAMLLFGSETLK 786
Cdd:PRK05812 352 IAGIvLTI-GMAVDANVLIFERIRE-----ELRegRSLRS----AIEAGFKRAFSTILdsniTTLIAAIILYALGTGPVK 421
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 506259029 787 DFAFAMTIGLLAGAYSSIAIACPLFAIW--KTREPKNVRL 824
Cdd:PRK05812 422 GFAVTLGIGILTSMFTAITVTRALVNLLygRRKRLKKLSI 461
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
323-820 |
1.80e-10 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 64.88 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 323 GMITAAAMAVFAVLYLglLATLSHFGlFSLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQT 402
Cdd:COG1033 244 GVLLPLLVVLLAVIWT--LGLMGLLG-IPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPP 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 403 SIdadLVSLVTA---LSLFFLASSGVKGFGLTLALGIMCDIVMMLLFkAPIIRLLAPHAIAKHPgfwGVKDSQAASKVYG 479
Cdd:COG1033 321 VL---LTSLTTAigfLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTL-LPALLSLLPRPKPKTR---RLKKPPELGRLLA 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 480 RLAAaegeMVE-------------TAVSAEAINSAESEaYASRKGGAEGTEAAQAASKVRGRFIKHDI----------NF 536
Cdd:COG1033 394 KLAR----FVLrrpkvilvvalvlAVVSLYGISRLKVE-YDFEDYLPEDSPIRQDLDFIEENFGGSDPlevvvdtgepDG 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 537 LGARKVFLSIAALAMVLCAL--VIGVRGLNLGIEFVGGTSIEFNETGSV------TTDQVRSAFAAAGESDAVIQTTESN 608
Cdd:COG1033 469 LKDPEVLKEIDRLQDYLESLpeVGKVLSLADLVKELNQALNEGDPKYYAlpesreLLAQLLLLLSSPPGDDLSRFVDEDY 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 609 GEPGFIVRIANTDASAAAGAATQVAQSL--NLSTDSFQVSTIGP-----DWGASIIQSMVIALLVSFVLIIIYIAIRF-E 680
Cdd:COG1033 549 SAARVTVRLKDLDSEEIKALVEEVRAFLaeNFPPDGVEVTLTGSavlfaAINESVIESQIRSLLLALLLIFLLLLLAFrS 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 681 YKMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEikcTFMTMANHSMNQVF 760
Cdd:COG1033 629 LRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGG---DLEEAIRRALRTTG 705
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 761 MRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIWKTREPK 820
Cdd:COG1033 706 KAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLLLDPRIAK 765
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
644-822 |
1.84e-10 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 64.37 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 644 QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRfeYKM-GITAIIALLHDIILVVGVYALVGReinpnT-----IAAL 717
Cdd:COG0342 257 EERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLY--YRLpGLVANIALALNVVLLLGVLSLLGA-----TltlpgIAGI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 718 -LTIlGYSLYDTVVVFHRISDnmqhsEIKctfmtmANHSMNQVF-------MRSI---NttLTSIIPVLAMLLFGSETLK 786
Cdd:COG0342 330 iLTI-GMAVDANVLIFERIRE-----ELR------AGRSLRAAIeagfkraFSTIldaN--VTTLIAAVVLFVLGTGPVK 395
|
170 180 190
....*....|....*....|....*....|....*..
gi 506259029 787 DFAFAMTIGLLAGAYSSIAIACPLFAIW-KTREPKNV 822
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLLlGRRRLKKL 432
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
583-839 |
7.16e-10 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 63.10 E-value: 7.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 583 VTTDQVRSAFAAAGESDaviqTTESNGEPGFIVRIANTdaSAAAGAATQVAQSLNLSTDSFQVSTIGPDWG-ASIIQSMV 661
Cdd:PRK13023 213 VVDNQVVSAPTVSGPLD----TSELQIEGAFDLQAANN--MAVVLRSGALPQAVTVLEERTIASALGEDYAsAAVLAALL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 662 IALLVSFVLIIIYIAirfeykMGITAIIALLHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQH 741
Cdd:PRK13023 287 AALVVGLFMVLSYGI------LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRK 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 742 SeikctfmTMANHSMNQVFMRSINT----TLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLFAIW-KT 816
Cdd:PRK13023 361 G-------YSVVQAMESGFYRALSTivdaNLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWvRT 433
|
250 260
....*....|....*....|....
gi 506259029 817 REPKNVRLVK-KYGAAIMHFEFAR 839
Cdd:PRK13023 434 AKPKEVPKRRlKLVPTVTHIPFMR 457
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
279-454 |
2.28e-08 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 54.92 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 279 SFSYAQSQTVGPTLGQDALSSGV---LVALAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLylgllATLSHFGlFSLSLA 355
Cdd:pfam02355 12 DAEIISIETVGPTVGSELARKAVlalLFALLLILIYVGLRFEWRFALGAIIALAHDVIITV-----GVFSLFG-IEVDLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 356 GVAGIVLTIGMAADSSILTLERFREEIR--FGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLA 433
Cdd:pfam02355 86 TVAALLTIIGYSVNDTVVVFDRVRENLRkkTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALL 165
|
170 180
....*....|....*....|.
gi 506259029 434 LGIMCDIVMMLLFKAPIIRLL 454
Cdd:pfam02355 166 VGVIVGTYSSIFIASPILLDL 186
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
319-465 |
2.65e-08 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 58.09 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 319 YHGLGMItaaaMAVFAVLYLGLLATLShFGLF---SLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITG 395
Cdd:TIGR03480 290 LRSPRLV----FAVLVTLIVGLILTAA-FATLavgHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVA 364
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506259029 396 VRH-GIQTSidadLVSLVTALSLF-FL--ASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLLAPHAIAKHPGF 465
Cdd:TIGR03480 365 ARRmGAALL----LAALATAAGFFaFLptDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGY 434
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
631-807 |
4.26e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 57.48 E-value: 4.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 631 QVAQSLNLSTDSF-----QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAirFEYKM-GITAIIALLHDIILVVGVYAL 704
Cdd:NF037998 413 TIEALINQTTSGFtfkvnGISEFNPVVTLLMLIASIIFLLILAIAIMIYLL--FAYRLlGLFAIIIALTSISLTLYSPTW 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 705 VGREINPNTIAALLTILGYSLYDTVVVFHRISDNM---QHSEIkcTFMTMANHSMNQVFmrsINTTLTSIIPVLAMLLFG 781
Cdd:NF037998 491 FGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyknKRSIE--ESFKIANKETIGII---VDALVVLLIPNLSLFWIG 565
|
170 180
....*....|....*....|....*.
gi 506259029 782 SETLKDFAFAMTIGLLAGAYSSIAIA 807
Cdd:NF037998 566 SNSIKSFATILLVGVIISLVLVIIVA 591
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
325-454 |
1.70e-07 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 55.55 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 325 ITAAAMAVFAVLY---LGLLATLSHFG-----LFSLSLAGVA-------GIVLTIGMAADSSILTLERFREEI-RFGRSI 388
Cdd:NF037998 453 ILAIAIMIYLLFAyrlLGLFAIIIALTsisltLYSPTWFGLAigpesitAIFIAIGLVLESCSLLFEAFKKHLyKNKRSI 532
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 506259029 389 RAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454
Cdd:NF037998 533 EESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLT 598
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
654-827 |
1.01e-06 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 52.94 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 654 ASIIQSMVIALLVSFVLIIIYIAIRFEYKMG-----ITAIIAllhdIILVVGVYALVGREINPNTIAALLTILGYSLYDT 728
Cdd:COG1033 214 EAIQSDLAIFFPLALLLILLLLFLFFRSLRGvllplLVVLLA----VIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYG 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 729 VVVFHRISDNMQHSEIKctfMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIAC 808
Cdd:COG1033 290 IHLLNRYREERRKGLDK---REALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLP 366
|
170
....*....|....*....
gi 506259029 809 PLFAIWKTREPKNVRLVKK 827
Cdd:COG1033 367 ALLSLLPRPKPKTRRLKKP 385
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
225-457 |
2.70e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 51.38 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 225 PTHGKIVIILDGQVNSApavQSEITGGKVEITGNYTqDQANGLKTVLeSGSLPVSFSYAQSqtvgptLGQDAlssGVLVA 304
Cdd:TIGR00921 135 HTVAIIIVQLKSDADYK---QVVPIYNDVERSLERT-NPPSGKFLDV-TGSPAINYDIERE------FGKDM---GTTMA 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 305 LAGLVLVMLYLLVFYHGLGMITAAAMAVFAVLY-LGLLATLShfglFSLSLAGVAGIVLTIGMAADSSILTLERFREEIR 383
Cdd:TIGR00921 201 ISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWvLGIMGWLG----IPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERD 276
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506259029 384 FGRSIRAASITGVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFkAPIIRLLAPH 457
Cdd:TIGR00921 277 IGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLV-LPALLQSIDI 349
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
244-453 |
1.41e-05 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 49.07 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 244 VQSEITGGKVEITGNYTQDQANGLKTVLESGSLPVSFSYAQSQTVGPTLGQDAL---------SSGVLVALAGLVLVMLY 314
Cdd:TIGR00921 481 LVKEVEGLPAPERSALEPIPEDEEGGYISGGQIKVAVIQVQLKQGEPKVQGRKIlrdvqhehpPPGVKVGVTGLPVAFAE 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 315 -LLVFYHGLGMITAAA-----MAVFAV-------------LYLGLLATLSHFGL----FSLSLAGVAGIVLTIGMaaDSS 371
Cdd:TIGR00921 561 mHELVNEGMRRMTIAGailvlMILLAVfrnpikavfpliaIGSGILWAIGLMGLrgipSFLAMATTISIILGLGM--DYS 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 372 ILTLERFREEirfgrsiRAAS--ITGVRHGIQTSIDADLVSLVTA----LSLFFLASSGVKGFGLTLALGIMCDIVMMLL 445
Cdd:TIGR00921 639 IHLAERYFEE-------RKEHgpKEAITHTMERTGPGILFSGLTTaggfLSLLLSHFPIMRNFGLVQGIGVLSSLTAALV 711
|
....*...
gi 506259029 446 FKAPIIRL 453
Cdd:TIGR00921 712 VFPALLVL 719
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
324-446 |
1.53e-05 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 48.06 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 324 MITAAAMAVFAVLylGLLATLSHFGLFSLS-LAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRHGIQT 402
Cdd:pfam03176 172 PLLTVGLSLGAAQ--GLVAILAHILGIGLStFALNLLVVLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKV 249
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 506259029 403 SIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLF 446
Cdd:pfam03176 250 VTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTL 293
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
233-436 |
2.92e-04 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 43.89 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 233 ILDGQVNSAPAVQSEITGGKVEIT----GNYTQDQANGLKTVLESGSLPVSFSyaQSQTVGPTLGQDALSSG---VLVAL 305
Cdd:COG0341 66 ALEEAGLGDASVQTFGSDNDVLIRtpplDGESAEEVEKVRAALKEAFGDVEIV--RVEFVGPTVGKELTRKAllaLLVAL 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 306 AGLvlvmlyllvfyhgLGMITAA---AMAVFAVLYLG--LLATLSHFGLFSL--SLAGVAGIvLTI-GMAADSSILTLER 377
Cdd:COG0341 144 IGI-------------LIYIAFRfewRFAVGAVVALLhdVLITLGIFSLFGLefDLTFIAAL-LTIiGYSLNDTVVVFDR 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506259029 378 FREEIRFGRSIRAASItgVRHGI-QT---SIDADLVSLVTALSLFFLASSGVKGFGLTLALGI 436
Cdd:COG0341 210 IRENLRKYRKMTLAEI--INLSInQTlsrTINTSLTTLLVVLALLFFGGETLRDFALALLIGI 270
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
328-454 |
3.18e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.58 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 328 AAMAVFAVLYLGLLATLSHFGLF----------SLSLAGVagIVLTIGMAADSSILTLERFREEIRFGRS---IRAASIT 394
Cdd:TIGR00833 770 APIVLIGSVALSYLWALGLSVLAfqhilgaelhWSVLAGV--FVLLVALGVDYNMLLVSRIKEESPAGNRtgiIRALGST 847
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506259029 395 GvrhGIQTSidadlVSLVTALSLFFLASS---GVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454
Cdd:TIGR00833 848 G---GVITA-----AGLVFAGTMAALASAqltAIAQFGFTVGVGILLDTFIVRSVTVPALTLL 902
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
329-484 |
5.11e-04 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 43.99 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 329 AMAVFAVLY-LGLLATLSHFglfsLSLAGVA-GIVLTIGMAA--DSSILTLERFREEIRFGRSIRAAsitgVRHGIQTSI 404
Cdd:COG2409 201 LTAGLAVGVaLGLLALLAAF----TDVSSFApNLLTMLGLGVgiDYALFLVSRYREELRAGEDREEA----VARAVATAG 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 405 DADLVSLVT---ALS-LFFLASSGVKGFGLTLALGIMCDIVMMLLFkAPIIRLLAPHAIAKHPGFWGVKDSQAASKVYGR 480
Cdd:COG2409 273 RAVLFSGLTvaiALLgLLLAGLPFLRSMGPAAAIGVAVAVLAALTL-LPALLALLGRRVFWPRRPRRRRAAAPESGFWRR 351
|
....
gi 506259029 481 LAAA 484
Cdd:COG2409 352 LARA 355
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
557-577 |
6.77e-04 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 37.65 E-value: 6.77e-04
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
647-804 |
6.91e-04 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 43.52 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 647 TIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEyKMGITAIIALLHDIILVVGVYALV-GREINPNTIAALLTILGYSL 725
Cdd:PRK12933 429 TIGPSLGAENIENGFAALALGMGITLLFMALWYR-RLGWVANVALIANMVCLFGLLALIpGAVLTLPGIAGLVLTVGMAV 507
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506259029 726 YDTVVVFHRISDNMQHSEikcTFMTMANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSI 804
Cdd:PRK12933 508 DTNVLIFERIKDKLKEGR---SFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGI 583
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
357-445 |
7.18e-04 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 43.60 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 357 VAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASITGVRH--GIQTSidADLVSLVTALSLFFLASSGVKGFGLTLAL 434
Cdd:COG2409 586 LLLFVILFGLGMDYEVFLVSRIREEYDRGGGTREAVIRGLARtgRVITS--AALIMAAVFAAFATSPLVFLKQIGFGLAV 663
|
90
....*....|...
gi 506259029 435 GIMCD--IVMMLL 445
Cdd:COG2409 664 GVLLDafVVRMLL 676
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
322-481 |
9.92e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 43.05 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 322 LGMITAA---AMAVFAVLyLGLLATLSHFGlFSLSLAGVAGIVLTIGMAADSSILTLERFREEIR-FGRSIRAASITGVR 397
Cdd:pfam00873 352 LQNWRATlipAIAIPLSL-LGTFAVMKAFG-FSINTLTLGGLVLAIGLVVDDAIVVVENIERVLEeNGLKPLEAAYKSMG 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 398 HGIQTSIDADLVSLVTALSLFFLasSGVKG-----FGLTLALGIMCD-IVMMLLFKAPIIRLLAPHAIAKHPGF--WGVK 469
Cdd:pfam00873 430 EIGGALVAIALVLSAVFLPILFL--GGLTGrifrqFAITIVLAILLSvLVALTLTPALCATLLKPRREPKHGGFfrWFNR 507
|
170
....*....|..
gi 506259029 470 DSQAASKVYGRL 481
Cdd:pfam00873 508 MFDRLTRGYAKL 519
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
255-436 |
2.84e-03 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 40.72 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 255 ITGNYTQDQANGLKTVLesGSLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLvmlylLVFYHGLGMITAAAMAVFA 334
Cdd:TIGR00966 57 LDTEQSEELREALEEAL--KNVDPDAEIRSIDAVGPSVGGELARKAVLALLAALVL-----ILIYITVRFEWRFALGAIV 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 335 VLYLGLLATLSHFGLFSL--SLAGVAGIVLTIGMAADSSILTLERFREEIrfgRSIRAASITGV--RHGIQT---SIDAD 407
Cdd:TIGR00966 130 ALVHDVIITVGVYSLFGIevNLTTVAALLTIIGYSINDTVVVFDRIRENL---RKYTRKTFTEVinLSINQTlsrTINTS 206
|
170 180
....*....|....*....|....*....
gi 506259029 408 LVSLVTALSLFFLASSGVKGFGLTLALGI 436
Cdd:TIGR00966 207 LTTLLAVLALYVFGGGVIKDFSLALLVGV 235
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
657-738 |
7.48e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 40.15 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506259029 657 IQSMVIALLVSFVLIIIYIAIRFEYK----MGITAIIALLHDIILVVGVYALVGREInpntIAALLTILGYSLYDTVVVF 732
Cdd:NF037998 956 ILQIAISFAIILLALIVYILIRFKWTyyvaLALAIVFAPAITVSIVIIFRVPITFEI----LIAFVSIIGFAIASAIIIL 1031
|
....*.
gi 506259029 733 HRISDN 738
Cdd:NF037998 1032 GKAKSL 1037
|
|
| |
