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Conserved domains on  [gi|506319838|ref|WP_015839613|]
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MULTISPECIES: ABC transporter permease [Pectobacterium]

Protein Classification

ABC transporter permease( domain architecture ID 10003058)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates such as monosaccharide sugars such as xylose, arabinose, and fructose

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
 11-342 9.33e-109

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440785  Cd Length: 322  Bit Score: 320.13  E-value: 9.33e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  11 TPSNPRGRFDPIAFFERFGVFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAV 90
Cdd:COG1172    2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  91 CAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPI 170
Cdd:COG1172   82 SGVVAALLL-----------VALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 171 AGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLA 250
Cdd:COG1172  151 SGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 251 GFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:COG1172  231 GILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAV 310

                        330
                 ....*....|..
gi 506319838 331 AFDTYAKSRRGA 342
Cdd:COG1172  311 LLDRLRRRRRAR 322
 
Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
 11-342 9.33e-109

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 320.13  E-value: 9.33e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  11 TPSNPRGRFDPIAFFERFGVFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAV 90
Cdd:COG1172    2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  91 CAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPI 170
Cdd:COG1172   82 SGVVAALLL-----------VALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 171 AGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLA 250
Cdd:COG1172  151 SGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 251 GFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:COG1172  231 GILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAV 310

                        330
                 ....*....|..
gi 506319838 331 AFDTYAKSRRGA 342
Cdd:COG1172  311 LLDRLRRRRRAR 322
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
 61-333 2.11e-86

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 261.19  E-value: 2.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  61 VSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVT 140
Cdd:cd06579    1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLL-----------VNAGLPIPLAILAALAVGALIGLLNGLLVA 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 141 KLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRW-WGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIG 219
Cdd:cd06579   70 YLRIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 220 GNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSI 299
Cdd:cd06579  150 GNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGAL 229

                        250       260       270
                 ....*....|....*....|....*....|....
gi 506319838 300 IMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:cd06579  230 LLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
rbsC PRK09512
ribose ABC transporter permease protein; Reviewed
 31-337 4.36e-83

ribose ABC transporter permease protein; Reviewed


Pssm-ID: 181922 [Multi-domain]  Cd Length: 320  Bit Score: 254.64  E-value: 4.36e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  31 FIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKGDnfttvdpd 110
Cdd:PRK09512  22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIE-------- 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 111 awfgLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPI-AGFDPG---YRWWGRGEIL 186
Cdd:PRK09512  94 ----VNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNadlFGWFGIGRPL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 187 GISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAG 266
Cdd:PRK09512 170 GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506319838 267 ITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAK 337
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
GguB NF040906
sugar ABC transporter permease;
28-339 6.71e-64

sugar ABC transporter permease;


Pssm-ID: 468841 [Multi-domain]  Cd Length: 375  Bit Score: 206.93  E-value: 6.71e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  28 FGVFIFMILLLIFFQ-SQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIkgdnftt 106
Cdd:NF040906   5 YGMLIALVAIVVLFQiLTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLM------- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 107 VDpdawFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRWWGRG--- 183
Cdd:NF040906  78 VN----WGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflp 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 184 EILGIS-------------------------------------------------------------------VPIWIFA 196
Cdd:NF040906 154 DLFGGTglhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnVLIILGV 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 197 LVALLGYLAlHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIAS 276
Cdd:NF040906 234 LILVYSFVT-NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAA 312

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506319838 277 VVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKSR 339
Cdd:NF040906 313 CFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
 53-330 1.16e-23

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 98.10  E-value: 1.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838   53 NITNILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIKGdnfttvdpdawFGLSWLVALGICLAMGTFI 131
Cdd:pfam02653   1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNL-----------LGPGLWLALPVGILVGAAV 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  132 GFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMND----GAPIAGFDPGYRWWGRGEILGISVPIWIFALVALLG-YLAL 206
Cdd:pfam02653  70 GLLIGILTLRLKINEVIITLLLNLAALGLALFLVTgilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLAlWLLL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  207 HKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAV-AGITFELRVIASVVIGGTslm 285
Cdd:pfam02653 150 YRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA--- 226

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 506319838  286 ggyGRISGTIIGSIIMGIL-INGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:pfam02653 227 ---GSPIGVVIGSLIIGLVqSLGLGALGSPPELSLLVLGALLILVL 269
 
Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
 11-342 9.33e-109

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 320.13  E-value: 9.33e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  11 TPSNPRGRFDPIAFFERFGVFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAV 90
Cdd:COG1172    2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  91 CAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPI 170
Cdd:COG1172   82 SGVVAALLL-----------VALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 171 AGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLA 250
Cdd:COG1172  151 SGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 251 GFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:COG1172  231 GILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAV 310

                        330
                 ....*....|..
gi 506319838 331 AFDTYAKSRRGA 342
Cdd:COG1172  311 LLDRLRRRRRAR 322
XylH COG4214
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
28-342 3.59e-90

ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443360 [Multi-domain]  Cd Length: 393  Bit Score: 275.07  E-value: 3.59e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  28 FGVFIFMILLLIFFQSQNS-NFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIkgdnftt 106
Cdd:COG4214   25 LGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLM------- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 107 vdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRWWGRGEI- 185
Cdd:COG4214   98 ----VNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLp 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 186 ---------------------------------------------------------------LGISVPIWIFALVALLG 202
Cdd:COG4214  174 dilgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyRGIPIVVLILLVLVVVY 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 203 YLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGT 282
Cdd:COG4214  254 TFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGT 333

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 283 SLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKSRRGA 342
Cdd:COG4214  334 SLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRGA 393
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
 61-333 2.11e-86

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 261.19  E-value: 2.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  61 VSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFLHGLGVT 140
Cdd:cd06579    1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLL-----------VNAGLPIPLAILAALAVGALIGLLNGLLVA 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 141 KLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRW-WGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIG 219
Cdd:cd06579   70 YLRIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 220 GNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSI 299
Cdd:cd06579  150 GNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGAL 229

                        250       260       270
                 ....*....|....*....|....*....|....
gi 506319838 300 IMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:cd06579  230 LLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
rbsC PRK09512
ribose ABC transporter permease protein; Reviewed
 31-337 4.36e-83

ribose ABC transporter permease protein; Reviewed


Pssm-ID: 181922 [Multi-domain]  Cd Length: 320  Bit Score: 254.64  E-value: 4.36e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  31 FIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKGDnfttvdpd 110
Cdd:PRK09512  22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIE-------- 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 111 awfgLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPI-AGFDPG---YRWWGRGEIL 186
Cdd:PRK09512  94 ----VNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNadlFGWFGIGRPL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 187 GISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAG 266
Cdd:PRK09512 170 GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506319838 267 ITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAK 337
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
COG4158 COG4158
Predicted ABC-type sugar transport system, permease component [General function prediction ...
 15-335 1.26e-76

Predicted ABC-type sugar transport system, permease component [General function prediction only];


Pssm-ID: 443324  Cd Length: 334  Bit Score: 238.68  E-value: 1.26e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  15 PRGRFDPIAFFERFGVFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAIT 94
Cdd:COG4158   17 AARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  95 AASVIKgdnfttvdpdawFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFD 174
Cdd:COG4158   97 AVLVSL------------LPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPD 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 175 PGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFIL 254
Cdd:COG4158  165 LPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 255 SARLGSAEAV-AGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:COG4158  245 AARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALD 324


                 ..
gi 506319838 334 TY 335
Cdd:COG4158  325 RY 326
GguB NF040906
sugar ABC transporter permease;
28-339 6.71e-64

sugar ABC transporter permease;


Pssm-ID: 468841 [Multi-domain]  Cd Length: 375  Bit Score: 206.93  E-value: 6.71e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  28 FGVFIFMILLLIFFQ-SQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIkgdnftt 106
Cdd:NF040906   5 YGMLIALVAIVVLFQiLTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLM------- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 107 VDpdawFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRWWGRG--- 183
Cdd:NF040906  78 VN----WGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflp 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 184 EILGIS-------------------------------------------------------------------VPIWIFA 196
Cdd:NF040906 154 DLFGGTglhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnVLIILGV 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 197 LVALLGYLAlHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIAS 276
Cdd:NF040906 234 LILVYSFVT-NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAA 312

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506319838 277 VVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKSR 339
Cdd:NF040906 313 CFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
mglC PRK09478
galactose/methyl galactoside ABC transporter permease MglC;
22-337 1.04e-59

galactose/methyl galactoside ABC transporter permease MglC;


Pssm-ID: 181892 [Multi-domain]  Cd Length: 336  Bit Score: 195.29  E-value: 1.04e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  22 IAFFERFGVFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKG 101
Cdd:PRK09478  10 LTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 102 -DNFTTVDPDAwFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMND---GAPIAGFDPGY 177
Cdd:PRK09478  90 mDNANKVFPEL-ATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSGF 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 178 RWWGRGEI----LGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFI 253
Cdd:PRK09478 169 STFAQGFValgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGML 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 254 LSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:PRK09478 249 EAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328


                 ....*.
gi 506319838 334 T--YAK 337
Cdd:PRK09478 329 SlkYAR 334
araH PRK11285
L-arabinose transporter permease protein; Provisional
 2-343 3.13e-59

L-arabinose transporter permease protein; Provisional


Pssm-ID: 183076 [Multi-domain]  Cd Length: 333  Bit Score: 193.74  E-value: 3.13e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838   2 SQQPLSKSITPSNPRGRFDPIAFFERFG---VFIFMILLLIFFQSqnsNFLSERNITNILTEVSIYGIMAVGMTFVILTA 78
Cdd:PRK11285   4 VSTSGSGAAAAAPPKSRFSLWRIWDQYGmlvVFAVLFIACSLFVP---NFASFINMKGLGLAISMIGMVACTMLFCLASG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  79 GIDLSVGSILAVCAITAASVIKGDNfttvdpdawfglSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWR 158
Cdd:PRK11285  81 DFDLSVASVVAFAGVVTAVVINATE------------SLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVR 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 159 GLTLVMNDGAPIAGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVS 238
Cdd:PRK11285 149 GLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKII 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 239 VYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQ 318
Cdd:PRK11285 229 IFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQ 308

                        330       340
                 ....*....|....*....|....*
gi 506319838 319 QIITGLIIVLAVAFDTYAKSRRGAI 343
Cdd:PRK11285 309 YVVRGLILLAAVLFDRYKQRAKRTV 333
PRK09699 PRK09699
D-allose ABC transporter permease;
17-333 1.74e-58

D-allose ABC transporter permease;


Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 191.14  E-value: 1.74e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  17 GRFDPIAFFERFGVFIFMILLLIFFQSQNSN-FLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITA 95
Cdd:PRK09699   1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  96 ASVIkgdnFTTVDPdawfglsWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDP 175
Cdd:PRK09699  81 AKLM----LAGVDP-------FLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSF 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 176 GYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILS 255
Cdd:PRK09699 150 DFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVST 229

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 506319838 256 ARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:PRK09699 230 ARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
PRK11618 PRK11618
inner membrane ABC transporter permease protein YjfF; Provisional
 35-309 2.63e-45

inner membrane ABC transporter permease protein YjfF; Provisional


Pssm-ID: 183235 [Multi-domain]  Cd Length: 317  Bit Score: 157.04  E-value: 2.63e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  35 ILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKgdnfttvdpdaWFG 114
Cdd:PRK11618  16 VLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIG-----------DYG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 115 LSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGL-TLVMNDGAPIAgfDPGYRwwgrgEILGISVPIW 193
Cdd:PRK11618  85 WSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsFLVSEESIPIN--HPFYD-----TLSSLAWKLP 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 194 ----------IFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEA 263
Cdd:PRK11618 158 gggrlsamalIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYA 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 506319838 264 VAGITFELRVIASVVIGGTSLMGGYGrisgtIIGSIIMGILINGLV 309
Cdd:PRK11618 238 LAAVGVELDAIAAVVIGGTLLTGGVG-----TVLGTLFGVLIQGLI 278
PRK15432 PRK15432
autoinducer 2 ABC transporter permease LsrC; Provisional
 30-333 3.60e-41

autoinducer 2 ABC transporter permease LsrC; Provisional


Pssm-ID: 185330 [Multi-domain]  Cd Length: 344  Bit Score: 146.80  E-value: 3.60e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  30 VFIFMILLLIFFQSQNSNFLSERNITNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKGdnfttvdp 109
Cdd:PRK15432  13 ALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA-------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 110 dawfGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRWWGRGEILGIS 189
Cdd:PRK15432  85 ----GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 190 VPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITF 269
Cdd:PRK15432 161 PIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506319838 270 ELRVIASVVIGGTSLMGGYGRISGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFD 333
Cdd:PRK15432 241 EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
PRK15038 PRK15038
autoinducer 2 ABC transporter permease LsrD;
65-330 6.29e-25

autoinducer 2 ABC transporter permease LsrD;


Pssm-ID: 184998  Cd Length: 330  Bit Score: 102.99  E-value: 6.29e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  65 GIMAVGMTFVILTAGIDLSVGSILAVCAITAASVIKGdnfttvdpdawfGLSWLVALGICLAMGTFIGFLHGLGVTKLRL 144
Cdd:PRK15038  46 GIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS------------GVPMPLAILLTLLLGALCGLINAGLIIYTGV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 145 PPFIVTLGGMTIWRGLTLVMNDGAP------IAGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFVYAI 218
Cdd:PRK15038 114 NPLVITLGTLYLFGGSALLLSGMAGatgyegIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLI 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 219 GGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTIIGS 298
Cdd:PRK15038 194 GQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAV 273

                        250       260       270
                 ....*....|....*....|....*....|..
gi 506319838 299 IIMGILINGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:PRK15038 274 LLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
 53-330 1.16e-23

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 98.10  E-value: 1.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838   53 NITNILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIKGdnfttvdpdawFGLSWLVALGICLAMGTFI 131
Cdd:pfam02653   1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNL-----------LGPGLWLALPVGILVGAAV 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  132 GFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMND----GAPIAGFDPGYRWWGRGEILGISVPIWIFALVALLG-YLAL 206
Cdd:pfam02653  70 GLLIGILTLRLKINEVIITLLLNLAALGLALFLVTgilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLAlWLLL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  207 HKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAV-AGITFELRVIASVVIGGTslm 285
Cdd:pfam02653 150 YRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA--- 226

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 506319838  286 ggyGRISGTIIGSIIMGIL-INGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:pfam02653 227 ---GSPIGVVIGSLIIGLVqSLGLGALGSPPELSLLVLGALLILVL 269
TM_PBP1_branched-chain-AA_like cd06574
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ...
 62-330 5.29e-21

Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.


Pssm-ID: 119320 [Multi-domain]  Cd Length: 266  Bit Score: 90.80  E-value: 5.29e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  62 SIYGIMAVGMTFVILTAGI-DLSVGSILAVCAITAASVIkgdnfttvdpdaWFGLSWLVALGICLAMGTFIGFLHGLGVT 140
Cdd:cd06574    2 LIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILI------------VAGYNPWLALIAAILAGAAAGLVTGFLHT 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 141 KLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAGFD-----PGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGRFV 215
Cdd:cd06574   70 RLKINGLLAGILIMIGLYSINLRIMGGPNIPLGTrdtllGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAM 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 216 YAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIGGTSLMGGYGRISGTI 295
Cdd:cd06574  150 RATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKASILG 229

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 506319838 296 IGSIIM--GILINGLVLMNVSAYYQQIITGLIIVLAV 330
Cdd:cd06574  230 VIIGAIlyRIALALALGSGLIPSDLKLITAGVIVLVL 266
LivH COG0559
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ...
 56-286 1.76e-13

Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440325 [Multi-domain]  Cd Length: 290  Bit Score: 69.71  E-value: 1.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  56 NILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFL 134
Cdd:COG0559   10 NGLSLGSIYALIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLA-----------TLLGLPLWLALLLAVLVAALLGVL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 135 HGLGV-----TKLRLPPFIVTLGGMTIWRGLTLVMNDGAPIAgFDPGYRwwGRGEILGISVP---IWIFALVALLG---Y 203
Cdd:COG0559   79 LERLVirplrGAPPLALLLATIGLSLVLQGLVLLIFGADPRS-FPALLS--GSVELGGVSIPayrLFIIVVALVLLaalW 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 204 LALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLgSAEAVAGITFELRVIASVVIGG-T 282
Cdd:COG0559  156 LFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVLGGlG 234


                 ....
gi 506319838 283 SLMG 286
Cdd:COG0559  235 SIPG 238
LivM COG4177
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ...
 56-332 3.39e-13

ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443336 [Multi-domain]  Cd Length: 285  Bit Score: 68.95  E-value: 3.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  56 NILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIKgdnfttvdpdaWFGLSWLVALGICLAMGTFIGFL 134
Cdd:COG4177    6 SLLTLILIYAILALGLNLLLGYTGlLSLGHAAFFGIGAYAAALLTT-----------HLGLPFWLALLLAGLVAALLGLL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 135 HGLGVTKLRLPPF-IVTLGGMTIwrgLTLVMNDGAPIAGFDPGYRWWGRGEILGISVP--------IWIFALVALLGYLA 205
Cdd:COG4177   75 IGLPALRLRGDYLaIATLAFAEI---VRLLALNLESLTGGADGLSGIPRPTLFGLDLGsplafyylVLALLVLVLLLLRR 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 206 LHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEA-VAGITFELRVIASVVIGGT-S 283
Cdd:COG4177  152 LVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSFSFLLSIEILLMVVLGGLgS 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 506319838 284 LMGGygrisgtiigsIIMGILINGL-VLMNVSAYYQQIITGLIIVLAVAF 332
Cdd:COG4177  232 LLGP-----------VLGAVLLVLLpELLRSLPEYRLLIFGLLLILVVLF 270
TM_PBP1_LivH_like cd06582
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ...
 62-286 5.85e-13

Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119324 [Multi-domain]  Cd Length: 272  Bit Score: 67.84  E-value: 5.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  62 SIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIkgdnfttvdpdAWFGLSWLVALGICLAMGTFIGFL-HGLGV 139
Cdd:cd06582    6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLL-----------VALGLPFWLALLLALLVAALLGVLlERLVL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 140 TKLR---LPPFIVTLGGMTIWRGLTLVMNDGAPIAGFDPGYRwwGRGEILGISVP---IWIFALVALLG---YLALHKTR 210
Cdd:cd06582   75 RPLRgapLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLS--GSVELGGVTIPpyrLFIIAVALVLLaalYLFLRRTR 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506319838 211 WGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGsAEAVAGITFELRVIASVVIGG-TSLMG 286
Cdd:cd06582  153 LGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTMGLLLLLKAFAAVVLGGlGSIPG 228
TM_PBP1_LivM_like cd06581
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ...
 61-332 3.39e-12

Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119323 [Multi-domain]  Cd Length: 268  Bit Score: 65.54  E-value: 3.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  61 VSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAITAASVIKGdnfttvdpdawFGLSWLVALGICLAMGTFIGFLHGLGV 139
Cdd:cd06581    1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALLATR-----------LGLPFWLALLAAGLVAALVGLLLGLPA 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 140 TKLRLPPF-IVTLGGMTIWRGLTLVMND--GAP--IAGFD-PGYRWWGRGEILGISVPIWIFALVALLGYLALHKTRWGR 213
Cdd:cd06581   70 LRLRGVYFaIATLAFAEIVRLLALNWSSltGGSngLSGIPpPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGR 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 214 FVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEA-VAGITFELRVIASVVIGGT-SLMGG-YGr 290
Cdd:cd06581  150 ALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPeSFGFALSIELLLMVVLGGLgSLLGPvLG- 228

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 506319838 291 isgtiigsiimGILINGL--VLMNVSAYYQQIITGLIIVLAVAF 332
Cdd:cd06581  229 -----------AALLVLLpeLLRSLGPGLRLLVFGLLLILVVLF 261
TM_PBP1_transp_TpRbsC_like cd06580
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ...
 104-256 5.79e-09

Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.


Pssm-ID: 119322 [Multi-domain]  Cd Length: 234  Bit Score: 55.91  E-value: 5.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 104 FTTVDPDAWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLGGMTIWRGLTLVMndgapiagfdpgyrwwgrg 183
Cdd:cd06580   37 LVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL------------------- 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506319838 184 eilgisvpIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSA 256
Cdd:cd06580   98 --------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVL 162
NupP COG4603
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ...
 187-340 3.98e-07

ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];


Pssm-ID: 443653 [Multi-domain]  Cd Length: 356  Bit Score: 51.27  E-value: 3.98e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 187 GISVPIWIFALVALLGYLALHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILsarlgsaeaVAG 266
Cdd:COG4603  195 RLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVE---------VLG 265

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 267 ITFELRVIASVVIGGT----SLMGGyGRISGTIIGSIIMGILINGLVLM----NVSAYYQQIITGLIIVLAVAFDTYAKS 338
Cdd:COG4603  266 VQGRLTPGFSPGYGFTgiavALLGR-NNPLGIILAALLFGALYVGGDAMqralGVPSEIVDVIQGLIILFVLAADFLIRY 344


                 ..
gi 506319838 339 RR 340
Cdd:COG4603  345 RL 346
NupQ COG1079
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ...
 111-255 1.46e-05

ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];


Pssm-ID: 440697 [Multi-domain]  Cd Length: 309  Bit Score: 46.22  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 111 AWFGLSWLVALGICLAMGTFIGFLHGLGVTKLRLPPFIVTLG------GMTIWRGLTLVMNDGA--PIAGFDPGYRWWGR 182
Cdd:COG1079   56 AYLTGSPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLAlnllalGLTAFLGRLLFGQGGQtpSIPGLPPIPIPGLS 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 183 -----GEIL-GISVPIWI-FALVALLGYLaLHKTRWGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILS 255
Cdd:COG1079  136 dipvlGPLLfGQSPLVYLaLLLVPLVWWV-LYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLS 214
COG4120 COG4120
ABC-type uncharacterized transport system, permease component [General function prediction ...
 63-341 1.10e-03

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443296  Cd Length: 296  Bit Score: 40.10  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  63 IYGIMAVG--MTFVILTAGiDLSV-GSILAVCAITAASVIKgdnfttvdpdawfGLSWLVALGICLAMGTFIGFLHGLGV 139
Cdd:COG4120   15 IYAIMALGvyITFRILDFP-DLTVdGSFPLGAAVAAVLIVA-------------GVNPFLATLAAFLAGALAGLVTGLLH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 140 TKLRLPPF---IVTlggMTIWRGLTLVMNDGA--PIAGFDPGYRWWGRGEILGISVPIWIFALVALLGYLALH---KTRW 211
Cdd:COG4120   81 TKLKIPPLlagILT---MTALYSINLRIMGKPniPLLGEDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDwflKTEL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 212 GRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGITFELRVIASVVIgGTSLMGgyGRI 291
Cdd:COG4120  158 GLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQGFADVNMGIGTIVIGLASVII-GEVLFG--SRS 234

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 506319838 292 SGTIIGSIIMG-----ILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKSRRG 341
Cdd:COG4120  235 ILRRLLAVVLGsilyrLIIALALQLGLPPNDLKLITALIVAIALALPQLKKKLKR 289
livM PRK11301
leucine/isoleucine/valine transporter permease subunit; Provisional
 48-286 9.56e-03

leucine/isoleucine/valine transporter permease subunit; Provisional


Pssm-ID: 236896 [Multi-domain]  Cd Length: 419  Bit Score: 37.64  E-value: 9.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838  48 FLSERNITNILTEVSIYGIMAVGMTFVILTAGI-DLSVGSILAVCAITAASVikgdnfttvdpDAWFGLSWLVALGICLA 126
Cdd:PRK11301 105 FFVSRGAVDIATLTLIYVILGLGLNVVVGLAGLlDLGYVGFYAVGAYTYALL-----------NHYYGLGFWECLPIAGL 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 127 MGTFIGFLHGLGVTKLR---LPpfIVTLG----------GMTIWRG-------------LTLVMNDGAPIAGFDPGYRWW 180
Cdd:PRK11301 174 MAALFGFLLGFPVLRLRgdyLA--IVTLGfgeiirilllNNTEITGgpngisqipkptlFGLEFSRTAREGGWDTFHEFF 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506319838 181 GRgEILGISVPIWIFALVALLGYLALHKTR------WGRFVYAIGGNTEAARLAGVNVQRVLVSVYVVIGCLAGLAGFIL 254
Cdd:PRK11301 252 GL-KYDPSDRVIFLYLVALLLVVLTLFVINrllrmpLGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGFAGTFF 330

                        250       260       270
                 ....*....|....*....|....*....|....
gi 506319838 255 SARLG--SAEAVAGITFELrVIASVVIGGtslMG 286
Cdd:PRK11301 331 AARQGfvSPESFTFIESAF-ILAIVVLGG---MG 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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