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Conserved domains on  [gi|506325459|ref|WP_015845221|]
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YjgB family protein [Paenibacillus sp. JDR-2]

Protein Classification

YjgB family protein( domain architecture ID 10624461)

YjgB family protein is a DUF4309 domain-containing protein similar to Bacillus subtilis protein YjgB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 51-190 4.84e-41

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


:

Pssm-ID: 464097  Cd Length: 130  Bit Score: 135.51  E-value: 4.84e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506325459   51 LMSFYKPALNGQFPNfHGFTIGSTTHESVIKAIGEAESPAKDSDDFDvYHSEMGHPGYAISY-KLGKIKEMRYFgtnver 129
Cdd:pfam14172   1 LKNIYELALEGKVIG-SDFAIGTTTIEDVEKKWGEPDKPEYVAAAKG-YYATYGKPNVVFGYnKGGQIFEVRSF------ 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506325459  130 QTNLGGISVKMLVQHWGTPNESVQIKSgktVQKKITYVRG-KYQLEFIFDGTNGTnLNHINL 190
Cdd:pfam14172  73 DKNLGGITLKEVKKVLGTPNYDVTING---DEEIYGYKAGsDYKLLFVFPGPTDK-VDHYSV 130
 
Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 51-190 4.84e-41

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


Pssm-ID: 464097  Cd Length: 130  Bit Score: 135.51  E-value: 4.84e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506325459   51 LMSFYKPALNGQFPNfHGFTIGSTTHESVIKAIGEAESPAKDSDDFDvYHSEMGHPGYAISY-KLGKIKEMRYFgtnver 129
Cdd:pfam14172   1 LKNIYELALEGKVIG-SDFAIGTTTIEDVEKKWGEPDKPEYVAAAKG-YYATYGKPNVVFGYnKGGQIFEVRSF------ 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506325459  130 QTNLGGISVKMLVQHWGTPNESVQIKSgktVQKKITYVRG-KYQLEFIFDGTNGTnLNHINL 190
Cdd:pfam14172  73 DKNLGGITLKEVKKVLGTPNYDVTING---DEEIYGYKAGsDYKLLFVFPGPTDK-VDHYSV 130
 
Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 51-190 4.84e-41

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


Pssm-ID: 464097  Cd Length: 130  Bit Score: 135.51  E-value: 4.84e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506325459   51 LMSFYKPALNGQFPNfHGFTIGSTTHESVIKAIGEAESPAKDSDDFDvYHSEMGHPGYAISY-KLGKIKEMRYFgtnver 129
Cdd:pfam14172   1 LKNIYELALEGKVIG-SDFAIGTTTIEDVEKKWGEPDKPEYVAAAKG-YYATYGKPNVVFGYnKGGQIFEVRSF------ 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506325459  130 QTNLGGISVKMLVQHWGTPNESVQIKSgktVQKKITYVRG-KYQLEFIFDGTNGTnLNHINL 190
Cdd:pfam14172  73 DKNLGGITLKEVKKVLGTPNYDVTING---DEEIYGYKAGsDYKLLFVFPGPTDK-VDHYSV 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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