|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
50-672 |
8.35e-153 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 456.87 E-value: 8.35e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 50 SSTVVSAPELSDAGV-TASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQDFynpaVTLYVDGVPQLSTN--TIQALTD 126
Cdd:TIGR01783 5 SVSVITRQELEDQQAgSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVDI----DNVYLDGVPLLSRGnlAIVDPAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 127 VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGPI-QDGLLYGSVTLLRQVDDGDM 205
Cdd:TIGR01783 81 VERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLgADGTFRGRLNGARQDGDSFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 206 INPATGSDdLGGTRASI---GNVKLRLAPDDQPWEM-----GFAASREC--TRATQDAYVG----WNDIKGRKLSISDGS 271
Cdd:TIGR01783 161 DGAGEETR-LGATATDWqldDRTLLRLGAYYQKERDrggygGLPASGGTsgRDLSSDRYLGtssnRNYDDREYLSYGLSL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 272 PDPYMRRCTDSQTLSGKYTTDDWVFNLISAWQQQhySRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFG-LYR 350
Cdd:TIGR01783 240 EYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSD--GGLFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHDLLLGvSYG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 351 QNTREKLNSaYDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGV----RFSHDKSSTQYHGSMLGNP------- 419
Cdd:TIGR01783 318 QRTTNRFNN-TGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALNGValqrILLADKWTLTLGGRYDSVDvksnngv 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 420 FGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIvPTAGLDAKPFVAEKSINYELGTRYETAEVTLQAATF 499
Cdd:TIGR01783 397 AGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYP-KGAGNSGDILEPEKGKNYELGVRYDLGDSLLATAAL 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 500 YTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDS-ELYHGNRVPFVPRYGAGSSV 578
Cdd:TIGR01783 476 FRITKDNQLVQDPVNGTFSVNAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFTEDTnGDTQGNTVPFVPKHTASLWA 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 579 NGVIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQAT--ERMNISVYVDNLFDRRYRTYGYMNGSSAVA 656
Cdd:TIGR01783 556 SYAPPVGDNGLTLGGGVQYTGKAYVDGGNTGKVPSYTVVDLSVRYDLTkkKNLTLALNVNNLFDRDYYTSGYRWGPSAYI 635
|
650
....*....|....*.
gi 506355249 657 QVNMGRTVGINTRIDF 672
Cdd:TIGR01783 636 YPGAPRTVGLSVSYDF 651
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
30-658 |
8.03e-83 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 274.40 E-value: 8.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 30 STLVVTASKQSSRSASANnVSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMlFSTISLRGVSSAQdfynPAVTLY 109
Cdd:COG1629 2 EEVVVTATRTDESLQDVP-GSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGG-AGQISIRGFGGGG----NRVLVL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 110 VDGVPQ-LSTNTIQALT-----DVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSG 183
Cdd:COG1629 76 VDGVPLnDPSGGDGGLSyidpeDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 184 PIQDGLLYGSVTLLRQvdDGDMINpatgsddlGGTRASIGNVKLRLAPDDQpWEMGFAASRECTRATQDAYVGWNDIKGR 263
Cdd:COG1629 156 GNGKLAYRLSASYRDS--DGYRDN--------SDSDRYNLRAKLGYQLGDD-TRLTLSASYSDSDQDSPGYLTLAALRPR 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 264 KLSISDGSPDPYMRRCTDSQTLSGKYT----TDDWVFNLISAWQQ------QHYSRTFPSGSLIVNMPQRWNQDVQELRA 333
Cdd:COG1629 225 GAMDDGTNPYSNDTDDNTRDRYSLSLEyehlGDGLKLSASAYYRYddtdldSDFTPTPADGGTLEQTDFDNRTYGLELRL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 334 A-TLGDARTVDMVFGL---YRQNTREKLNSAYDMPTMPYLSSTGY--TTAETLAAYSDLTWHLTDRFDIGGGVRFshDKS 407
Cdd:COG1629 305 TyDLGFGGKHTLLVGLdyqRQDLDGSGYPLDLGSGSLPTLTSGADddGTTTSLALYAQDTYKLTDKLTLTAGLRY--DYV 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 408 STQYHGSMLGNPFGDqGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFV-----AEKSINYE 482
Cdd:COG1629 383 SYDVDDTVTGTDSAS-GSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSVGnpdlkPETSTNYE 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 483 LGTRYETAE--VTLQAATFYTHTKDMQL---YSGPVGMQT-LSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTN 556
Cdd:COG1629 462 LGLRYRLLDgrLSLSLALFYSDVDNEILsvpLPNDSGFSTyYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDD 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 557 DSEL---YHGNRVPFVPRYGAGSSVNGVIDTRYGAlmpRLAVNLVGPHYFDGDNQLRQGT-YATLDSSLGWQATERMNIS 632
Cdd:COG1629 542 DTDGsadLDGNRLPGVPPLTANLGLTYEFPGGWSL---GLGVRYVGDRYLDDANTQGAPGgYTLVDLGAGYRFGDNLTLS 618
|
650 660
....*....|....*....|....*.
gi 506355249 633 VYVDNLFDRRYRTYGYMNGSSAVAQV 658
Cdd:COG1629 619 LGVDNLFDKKYATSLSVRASNVRGFL 644
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
50-672 |
5.64e-60 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 212.31 E-value: 5.64e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 50 SSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQdfynpaVTLYVDGVPQLSTNTIQALTD--- 126
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFGPDR------TLVLVDGLPLASSNYGRGVDLnti 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 127 ----VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSR---DSYRSKFNLSGPIQDGLLyGSVTLLRQ 199
Cdd:cd01347 75 ppelIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDnsgSSGGGGFDVSGALADDGA-FGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 200 VDDGDMINPATGSDDLGGTRASIGNVKLRLAPDDQpwemgfaasrecTRATQDAYVGWNDIKGRKLSISDGSPDPYMRRC 279
Cdd:cd01347 154 YRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDD------------TRLTLDAGYQDQDADGPGGTLPANGTGSSLGGG 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 280 TDSQTLSGK--------------YTTDDWVFNLISAWQQQHYSRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMV 345
Cdd:cd01347 222 PSSNTNGDRdwdyrdryrkraslGLEHDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLG 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 346 FglyrqntREKLNSAYDMPTMPYLSSTGYT------TAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMlgnp 419
Cdd:cd01347 302 F-------DAGLNAPFGTGPVAHTLTLGVEyrreelDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAG---- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 420 fGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKP-------SGYNIVPTAGLDAKPFVAEKSINYELGTRYETAE- 491
Cdd:cd01347 371 -GTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRApslgelyGGGSHGGTAAVGNPNLKPEKSKQYELGLKYDPGDg 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 492 VTLQAATFYTHTKDMQLYSGPVGMQTLS----NAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHGNRVP 567
Cdd:cd01347 450 LTLSAALFRIDIKNEIVSTPTNTGLGLVtvyvNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATTGNRLP 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 568 FVPRYGAGSSVNgvidtrYGALMPRLAVNL----VGPHYFD---GDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFD 640
Cdd:cd01347 530 GIPKHTANLGLD------YELPDEGLTAGGgvryRGKQYADtanGNNTVKVPGYTLVDLSASYQFTKNLTLRLGVNNLFD 603
|
650 660 670
....*....|....*....|....*....|..
gi 506355249 641 RRYRTYGYMNGSSAVAQVNMGRTVGINTRIDF 672
Cdd:cd01347 604 KDYYTSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
211-671 |
9.27e-38 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 146.84 E-value: 9.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 211 GSDDLGGTRASIGNVKLRLAPDDQPWEMGFAASRECTRATQDAYVGWNDikgrklsisdgsPDPYMRRCTDSQTLSGKYT 290
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYY------------GRDYSDTDRKRLSLGYDYD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 291 TDD---WVFNLI------SAWQQQHYSRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFGLYRQ------NTRE 355
Cdd:pfam00593 71 LGDglsWLSTLRlglrysSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRtagldyRRLD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 356 KLNSAYDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHgsmlgNPFGDQGKSNDDQVLGQL 435
Cdd:pfam00593 151 DDAYDPYDPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDG-----NGGGDNFSRSYSAFSPRL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 436 SAGYMLTDDWRVYTRVAQGYK-PSGYNIVPTAGLDAKPFV--------AEKSINYELGTRYETAEVTLQAATFYTHTKDM 506
Cdd:pfam00593 226 GLVYKPTDNLSLYASYSRGFRaPSLGELYGSGSGGGGGAVaggnpdlkPETSDNYELGLKYDDGRLSLSLALFYIDIKNL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 507 QLY-----SGPVGMQTLSNAGKADATGVELEAKWRFapgWSWDINGNVIR--SEFTNDSELYHGNRVPFVPRYgagssvN 579
Cdd:pfam00593 306 ITSdpdgpGLGGTVYTYTNVGKARIRGVELELSGRL---WGLGLSGGGYTytDADDDADADDTGNPLPNVPRH------T 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 580 GVIDTRYGALMPRLAVNLVGPH-------YFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYMNGS 652
Cdd:pfam00593 377 ANLGLTYDFPLGGWGARLGARYvgsgerrYGDAANTFKTPGYTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYSSGGG 456
|
490
....*....|....*....
gi 506355249 653 SAVAQVNMGRTVGINTRID 671
Cdd:pfam00593 457 NLGGYPGPGRTFYLGLSYK 475
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
20-648 |
1.39e-28 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 121.42 E-value: 1.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 20 ANAQTSQQDEsTLVVTAS--KQSSRSASAnnvSSTVVSAPEL-SDAGVTASDKLPRVlPGLNIENSGNMlfSTISLRGVS 96
Cdd:PRK13483 25 AQAAPDKTME-TVVVTASgyEQQIRDAPA---SISVITREDLeNRFYRDLTDALLDV-PGVVVTGGGDR--TDISLRGMG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 97 SAqdfynpaVTL-YVDGVPQLSTNT-------------IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPR 162
Cdd:PRK13483 98 SQ-------YTLiLVDGKRQSSRETrpnsdgpgveqawTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 163 GYIEGGV------SSRDSYRSKFNLSGPIQDGLL----YGSVTlLRQVDDGDminpatgsDDLGGTRASIGNVKLRLAPD 232
Cdd:PRK13483 171 GEVRLDTtlqensDSGNVYQANFFVNGPLIKDLLglqlYGQYT-QREEDDIE--------GGYRDKDARSLTAKLALTPN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 233 DQPwEMGFaasrECTRATQ--DAYVGwndikgrkLSISDGSPDPYMRR---CTDSQTL--SGKYT---TDDWVFNLISAW 302
Cdd:PRK13483 242 EDH-DIML----EVGTSNQerDSTVG--------KTVAPLAPGESCGRrgcPESSTTEyeRSTVSlshTGRWDFGTSDTY 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 303 QQQHYSRTFPSGSLIVNMpqrwnqDVQELRAATLGDARTvdMVFGLYRQNtrEKLNSAydmpTMPYLSSTGYTTAETLAA 382
Cdd:PRK13483 309 IQHEEFDNKSREMKIKNT------DFQSSLVAPLGQEHT--LTFGAAYNH--QDLTDE----TSNQISDLTDISRTQWAV 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 383 YSDLTWHLTDRFDIGGGVRFSHDKSstqyhgsmlgnpFGdqgksndDQVLGQLSAGYMLTDDWRVYTRVAQGYK-PSGYN 461
Cdd:PRK13483 375 FSEDEWRIADDFALTGGLRLDHDEN------------FG-------GHVSPRVYGVWNLAPSWTVKGGVSTGFRaPSLRQ 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 462 IVPTAGL-----------DAKPfvaEKSINYELGTRYETAEVTLQAAT-FYTHTKD---------MQLYSGP----VGMQ 516
Cdd:PRK13483 436 TTPDWGQvsrggniygnpDLKP---ETSLNKELGLYYDLGSGLTASLTvFYNEFKDkitrvacpaTQCTDGPnqfgADPT 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 517 TLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEftNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALmprLAVN 596
Cdd:PRK13483 513 TYVNIDEAVTQGVEASLSYPITSTLSLSGNYTYTDSE--QKSGAYKGSPLNQLPKHLFQASLNWEPTDRLNSW---ARVN 587
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 506355249 597 LVG----PHYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRR--YRTYGY 648
Cdd:PRK13483 588 YRGeesqPTTGPSSSSFIAPSYTFLDLGANYQLTDNLKLSAGIYNLFDKEinYEEYGY 645
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
50-672 |
8.35e-153 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 456.87 E-value: 8.35e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 50 SSTVVSAPELSDAGV-TASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQDFynpaVTLYVDGVPQLSTN--TIQALTD 126
Cdd:TIGR01783 5 SVSVITRQELEDQQAgSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVDI----DNVYLDGVPLLSRGnlAIVDPAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 127 VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGPI-QDGLLYGSVTLLRQVDDGDM 205
Cdd:TIGR01783 81 VERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLgADGTFRGRLNGARQDGDSFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 206 INPATGSDdLGGTRASI---GNVKLRLAPDDQPWEM-----GFAASREC--TRATQDAYVG----WNDIKGRKLSISDGS 271
Cdd:TIGR01783 161 DGAGEETR-LGATATDWqldDRTLLRLGAYYQKERDrggygGLPASGGTsgRDLSSDRYLGtssnRNYDDREYLSYGLSL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 272 PDPYMRRCTDSQTLSGKYTTDDWVFNLISAWQQQhySRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFG-LYR 350
Cdd:TIGR01783 240 EYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSD--GGLFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHDLLLGvSYG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 351 QNTREKLNSaYDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGV----RFSHDKSSTQYHGSMLGNP------- 419
Cdd:TIGR01783 318 QRTTNRFNN-TGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALNGValqrILLADKWTLTLGGRYDSVDvksnngv 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 420 FGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIvPTAGLDAKPFVAEKSINYELGTRYETAEVTLQAATF 499
Cdd:TIGR01783 397 AGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYP-KGAGNSGDILEPEKGKNYELGVRYDLGDSLLATAAL 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 500 YTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDS-ELYHGNRVPFVPRYGAGSSV 578
Cdd:TIGR01783 476 FRITKDNQLVQDPVNGTFSVNAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFTEDTnGDTQGNTVPFVPKHTASLWA 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 579 NGVIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQAT--ERMNISVYVDNLFDRRYRTYGYMNGSSAVA 656
Cdd:TIGR01783 556 SYAPPVGDNGLTLGGGVQYTGKAYVDGGNTGKVPSYTVVDLSVRYDLTkkKNLTLALNVNNLFDRDYYTSGYRWGPSAYI 635
|
650
....*....|....*.
gi 506355249 657 QVNMGRTVGINTRIDF 672
Cdd:TIGR01783 636 YPGAPRTVGLSVSYDF 651
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
30-658 |
8.03e-83 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 274.40 E-value: 8.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 30 STLVVTASKQSSRSASANnVSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMlFSTISLRGVSSAQdfynPAVTLY 109
Cdd:COG1629 2 EEVVVTATRTDESLQDVP-GSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGG-AGQISIRGFGGGG----NRVLVL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 110 VDGVPQ-LSTNTIQALT-----DVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSG 183
Cdd:COG1629 76 VDGVPLnDPSGGDGGLSyidpeDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 184 PIQDGLLYGSVTLLRQvdDGDMINpatgsddlGGTRASIGNVKLRLAPDDQpWEMGFAASRECTRATQDAYVGWNDIKGR 263
Cdd:COG1629 156 GNGKLAYRLSASYRDS--DGYRDN--------SDSDRYNLRAKLGYQLGDD-TRLTLSASYSDSDQDSPGYLTLAALRPR 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 264 KLSISDGSPDPYMRRCTDSQTLSGKYT----TDDWVFNLISAWQQ------QHYSRTFPSGSLIVNMPQRWNQDVQELRA 333
Cdd:COG1629 225 GAMDDGTNPYSNDTDDNTRDRYSLSLEyehlGDGLKLSASAYYRYddtdldSDFTPTPADGGTLEQTDFDNRTYGLELRL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 334 A-TLGDARTVDMVFGL---YRQNTREKLNSAYDMPTMPYLSSTGY--TTAETLAAYSDLTWHLTDRFDIGGGVRFshDKS 407
Cdd:COG1629 305 TyDLGFGGKHTLLVGLdyqRQDLDGSGYPLDLGSGSLPTLTSGADddGTTTSLALYAQDTYKLTDKLTLTAGLRY--DYV 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 408 STQYHGSMLGNPFGDqGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFV-----AEKSINYE 482
Cdd:COG1629 383 SYDVDDTVTGTDSAS-GSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSVGnpdlkPETSTNYE 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 483 LGTRYETAE--VTLQAATFYTHTKDMQL---YSGPVGMQT-LSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTN 556
Cdd:COG1629 462 LGLRYRLLDgrLSLSLALFYSDVDNEILsvpLPNDSGFSTyYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDD 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 557 DSEL---YHGNRVPFVPRYGAGSSVNGVIDTRYGAlmpRLAVNLVGPHYFDGDNQLRQGT-YATLDSSLGWQATERMNIS 632
Cdd:COG1629 542 DTDGsadLDGNRLPGVPPLTANLGLTYEFPGGWSL---GLGVRYVGDRYLDDANTQGAPGgYTLVDLGAGYRFGDNLTLS 618
|
650 660
....*....|....*....|....*.
gi 506355249 633 VYVDNLFDRRYRTYGYMNGSSAVAQV 658
Cdd:COG1629 619 LGVDNLFDKKYATSLSVRASNVRGFL 644
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
20-672 |
1.01e-62 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 220.96 E-value: 1.01e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 20 ANAQTSQQDESTLVVTASKQSSRSASANNVSSTVVSAPELSD-AGVTASDKLPRVlPGLNI-ENSGNMLFSTISLRGVSS 97
Cdd:COG4772 14 AAAAEAATTLETVVVTGSRAAEARLKDVPGSVSVVDREELENqAATSLREVLRRV-PGVNVqEEDGFGLRPNIGIRGLGP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 98 AqdfYNPAVTLYVDGVP---------QLS-TNTIQAltdVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEG 167
Cdd:COG4772 93 R---RSRGITLLEDGIPiapapygdpAAYyFPDLER---MERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGGELRV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 168 GVSSRDSYRSKFNLSGPIQDGLLYGSVTLLRQvdDGDMINPATGSDDLggtrasigNVKLRLAPDD-QPWEMGFAASREc 246
Cdd:COG4772 167 TGGSFGYRRTHASVGGTVGNFGYLVEYSRKRG--DGFRDNSGFDINDF--------NAKLGYRLSDrQELTLKFQYYDE- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 247 traTQDAYVGwndikgrkLSISDGSPDPYMRRC------TDSQTLSGKYT---TDDWVFNLI---------SAWQQQHYS 308
Cdd:COG4772 236 ---DANTPGG--------LTDAQFDADPRQSYRpadqfdTRRTQLSLRYEhqlSDNTTLTTTayyndfsrnWYIRQNTAD 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 309 RTFPSGSLIVNMPQRWNQDVQ---ELRAATLGDARTVDMVFGLYRQNTREKL--NSAYDMPTMPYLSSTGYTTAETLAAY 383
Cdd:COG4772 305 PNTPGLGLRGNPRGYRSYGIEprlTHRFELGGVPHTLEVGLRYHREEEDRKQyvNTYGQGRSGAGLRRDRRFSADALAAY 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 384 SDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMLGNPfGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIV 463
Cdd:COG4772 385 AQNRFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGG-DDSGSNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFGDL 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 464 PTAGLDAKPFVAEKSINYELGTRYE-TAEVTLQAATFYTHTKD-MQLYSGPVGMQ-TLSNAGKADATGVELEAKWRFAP- 539
Cdd:COG4772 464 AYGNGGNPDLKPEKSWNYELGTRGRiGNGLSAEVALFYIDYDNeLGSCSAAGGDRsTFTNAGETRHQGLELALDYDLLKg 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 540 ---GWSWDINGNVIRSEFTNDS-ELYHGNRVPFVPRYgagsSVNGVIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGT-- 613
Cdd:COG4772 544 gglGLPLFAAYTYTDAEFTSDFgPVFAGNRLPYVPRH----QLTAGLGYEHGGWTANLNGRYVSEQFTDAANTVADGSfg 619
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 506355249 614 ----YATLDSSLGWQATERMNISVYVDNLFDRRY---RTYGYMNGssavAQVNMGRTVGINTRIDF 672
Cdd:COG4772 620 kipsYTVLDLSASYDFGKNLSLFAGVNNLFDKRYiasRAPNYAAG----IRPGPPRTVYAGLRLKF 681
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
50-672 |
5.64e-60 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 212.31 E-value: 5.64e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 50 SSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQdfynpaVTLYVDGVPQLSTNTIQALTD--- 126
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFGPDR------TLVLVDGLPLASSNYGRGVDLnti 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 127 ----VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSR---DSYRSKFNLSGPIQDGLLyGSVTLLRQ 199
Cdd:cd01347 75 ppelIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDnsgSSGGGGFDVSGALADDGA-FGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 200 VDDGDMINPATGSDDLGGTRASIGNVKLRLAPDDQpwemgfaasrecTRATQDAYVGWNDIKGRKLSISDGSPDPYMRRC 279
Cdd:cd01347 154 YRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDD------------TRLTLDAGYQDQDADGPGGTLPANGTGSSLGGG 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 280 TDSQTLSGK--------------YTTDDWVFNLISAWQQQHYSRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMV 345
Cdd:cd01347 222 PSSNTNGDRdwdyrdryrkraslGLEHDLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLG 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 346 FglyrqntREKLNSAYDMPTMPYLSSTGYT------TAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMlgnp 419
Cdd:cd01347 302 F-------DAGLNAPFGTGPVAHTLTLGVEyrreelDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAG---- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 420 fGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKP-------SGYNIVPTAGLDAKPFVAEKSINYELGTRYETAE- 491
Cdd:cd01347 371 -GTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRApslgelyGGGSHGGTAAVGNPNLKPEKSKQYELGLKYDPGDg 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 492 VTLQAATFYTHTKDMQLYSGPVGMQTLS----NAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHGNRVP 567
Cdd:cd01347 450 LTLSAALFRIDIKNEIVSTPTNTGLGLVtvyvNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATTGNRLP 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 568 FVPRYGAGSSVNgvidtrYGALMPRLAVNL----VGPHYFD---GDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFD 640
Cdd:cd01347 530 GIPKHTANLGLD------YELPDEGLTAGGgvryRGKQYADtanGNNTVKVPGYTLVDLSASYQFTKNLTLRLGVNNLFD 603
|
650 660 670
....*....|....*....|....*....|..
gi 506355249 641 RRYRTYGYMNGSSAVAQVNMGRTVGINTRIDF 672
Cdd:cd01347 604 KDYYTSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
50-672 |
1.14e-57 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 206.27 E-value: 1.14e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 50 SSTVVSAPELSDAGV-TASDKLpRVLPGLNIENSGNMLFSTISLRGVSSAQDFYnpavtlyVDGVPQLSTNTIqALTDVQ 128
Cdd:COG4774 12 SVTVVTRELIEDQGAtSLADAL-RNVPGVTFGAGEGGNGDSFSIRGFSASGDIY-------VDGLRDPGQYRR-DTFNLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 129 SVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGPIQDGLLYgSVTLLRQvdDGDminp 208
Cdd:COG4774 83 RVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGDDLAY-RLNGMYR--DSD---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 209 aTGSDDLGGTRASIgNVKLRLAPDDQpwemgfaasrecTRATQDAYVGWNDIK----------GRKLSISD----GSPDP 274
Cdd:COG4774 156 -SYRDGVDNDRWGI-APSLTWRLGDR------------TRLTLDYEYQDDDRTpdygvpavanGRPVDVDRstfyGQPDD 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 275 YMRRCTDSQTLSGKYT-TDDWVFNLISAWQQ--QHYSRTFP-----SGSLIVNMPQRW-NQDVQELRAATLGDART---- 341
Cdd:COG4774 222 YSDSETDSATLRLEHDfNDNWTLRNALRYSDydRDYRNTYPtggnaTGTVTRSAYRRDqDNDTLSNQTDLTGKFDTggvk 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 342 VDMVFGL---YRQNTREKLNSAYDMPT--------------MPYLSSTGYTTAETLAAY-SDlTWHLTDRFDIGGGVRfs 403
Cdd:COG4774 302 HTLLAGVeysREDSDNARYSGGGTAPTvnlynpvygapvtgPTLGGADNDSRTDTTGLYlQD-TISLTDRWSLLAGLR-- 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 404 HDKSSTQYHGSMLGNPFGDQgksNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGynIVPTAGLDAKPFVAEKSINYEL 483
Cdd:COG4774 379 YDRFDTDYTDRTTGATTSSY---DDSAFSPRAGLVYKPTPNLSLYASYSTSFNPGG--GAPSLSNAGQALDPEKSRQYEV 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 484 GTRYETAE--VTLQAATFYThTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPGWSwdINGNV--IRSEFTNDSE 559
Cdd:COG4774 454 GVKWDLLDgrLSLTAALFRI-EKTNVRTTDPANPGVYVQTGEQRSRGVELEATGELTPGWS--VLAGYtyLDAEITKSAN 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 560 -LYHGNRVPFVPRYgagssvNGVIDTRYGALMPRLAVNL----VGPHYFDGDNQLRQGTYATLDSSLGWQATERMNISVY 634
Cdd:COG4774 531 aANVGNRLPNVPRH------SASLWTTYDLPLPGLTLGGgvryVGSRYADAANTVKLPSYTRFDAGASYRLNKNLTLRLN 604
|
650 660 670
....*....|....*....|....*....|....*...
gi 506355249 635 VDNLFDRRYRTYGYMNGSSAVAQvnmGRTVGINTRIDF 672
Cdd:COG4774 605 VNNLTDKRYYASAYGSGYVTPGA---PRTVLLSASYRF 639
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
22-632 |
1.14e-57 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 205.48 E-value: 1.14e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 22 AQTSQQDESTLVVTASKqSSRSASANNVSSTVVSAPELSDAGVTASDKLPRVLPGLNIE-NSGNMLFSTISLRGVSSAQd 100
Cdd:COG4771 20 LAEDATELEEVVVTATR-TEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTrSGGRGGSSGISIRGLGGDR- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 101 fynpaVTLYVDGVPQLSTNTIQA-------LTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRD 173
Cdd:COG4771 98 -----VLVLIDGVPVNNPALGGGgdlsyipPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSLGYGSNG 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 174 --SYRSKFNLSGPIQDGLLYGSVTLLRQvdDGDMINPATGSDDLGGTRASIGNVKLRLAPDD-QPWEMGFAASRECTRAT 250
Cdd:COG4771 173 ngTYSGSLSLGGPGDKLSFLLSGSYRDR--DGYLDYRNGGFVGNSGYERYNLNAKLGYRLSDnHRLSLSGGYSRQDRDGG 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 251 QDAYVGwndikgrklSISDGSPDPYMRRCTDSQTLSGKYTTD-DWVFNLISAWQQQHYSRTFPS--GSLIVNMPQRWNQD 327
Cdd:COG4771 251 PPTLGD---------TEISSDNAGDRDTTTDRGNYSLRYNGDlGDNLDLSLYYSRTDRDSTNGSlgGSTGSFSDSDDTTY 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 328 VQELRAA-TLGDARTVdmVFGLyrQNTREKLNSAYdmptmpYLSSTGYTTaETLAAYSDLTWHLTDRFDIGGGVRFSHDK 406
Cdd:COG4771 322 GLELDLTyPLGGNHTL--TLGA--EYRYDDLDSSS------FLGGADASR-DTYGLFAQDEWKLTDKLTLTAGLRYDYYS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 407 SStqyhgsmlgnpfgdqGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKP-------------SGYNIVPTAGLDakpf 473
Cdd:COG4771 391 TF---------------GASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRApslaelygsgtgtPGRYVLGNPDLK---- 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 474 vAEKSINYELGTRYETAE--VTLQAATFYTHTKDMQLYS----GPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDING 547
Cdd:COG4771 452 -PETSDNYELGLEYRLGNggLSLSLTGFYTDIKDLIVLVpvgpGPGDVLQYENVGKARTYGLELELKYRLGKGLTLTASY 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 548 NVIRSEFTNDSElyhGNRVPFVPRYGAGSSVNGVIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQATE 627
Cdd:COG4771 531 TYLDSKIDDGDT---GEPLPNVPPHKANLGLDYRLPKWWLLLLLTRYYGGRYVTPPSGRLEGYTPGYTLLDLRASYKLTK 607
|
....*
gi 506355249 628 RMNIS 632
Cdd:COG4771 608 NLTLS 612
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
20-672 |
1.89e-56 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 203.59 E-value: 1.89e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 20 ANAQTSQQDESTLVVTASKQSSRSASANNVSS---------------TVVSAPELSDAGVTASDKLPRVLPGLNIENSGN 84
Cdd:COG4773 23 AAAAAEATTLPEVTVTGTAEGTGGYTAKSSSTatkldtplretpqsvSVVTRQLIEDQGATTLDDALRNVPGVTVSSYDG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 85 MLFSTISLRGVSSAqdfynpavTLYVDGVPQLSTNTIQALTD-VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRG 163
Cdd:COG4773 103 GGRDSFSIRGFSID--------NYLRDGLPLGGFGGGQPDTAnLERVEVLKGPAGLLYGAGSPGGLVNLVTKRPTAEPQG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 164 YIEGGVSSRDSYRSKFNLSGPI-QDGLLYGSVTLLRQvdDGDminpaTGSDDLGGTRASI-GNVKLRLAPDdqpWEMGFA 241
Cdd:COG4773 175 EVSLSAGSWDTYRATADVGGPLnEDGTLRYRLNAAYE--DGD-----SFRDGVDNRRTLIaPSLDWDLTDD---TTLTLG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 242 ASRecTRATQDAYVGWNDIKGRKLSI----SDGSPDPYMRrcTDSQTLSGKYT---TDDWVFNLISAWQQQH-------- 306
Cdd:COG4773 245 AEY--QDDDSTGDRGFLPLDGTLLDLprstNLGEPWDYYD--TETTTLFAELEhrfNDDWSLRANARYSDSDrdgrsaya 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 307 YSRTFPSGSLIVNMPQRWNQDVQELRA--------ATLGdaRTVDMVFGL-YRQNTREKLNSAYD-----------MPTM 366
Cdd:COG4773 321 YGAPDAATGTLTRYASARDGDSRSDSLdanlngkfETGG--LEHTLLVGAdYSRYDSDSDSATAGtiniynpvygnLPEP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 367 PYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSmlgnpfGDQGKSNDDQVLGQLSAGYMLTDDWR 446
Cdd:COG4773 399 DFDASDTDTTTRQTGLYAQDQISLTDRLSLLLGGRYDWYETDSTNRLG------GSTTSYDDSAFTPRAGLVYDLTPGLS 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 447 VYTRVAQGYKPSGYnivptAGLDAKPFVAEKSINYELGTRYETAEVTLQA-ATFYTHTKDMQLYSGPVGMQTLSNAGKAD 525
Cdd:COG4773 473 LYASYSESFEPQSG-----ADNNGNPLDPETGKQYEAGVKGELFDGRLNAtLAVFDITQKNVATTDPDNPNFYVQVGEVR 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 526 ATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHGNRVPFVPRYGAgsSVNGVIDTRYGALmPRLAVNL----VGPH 601
Cdd:COG4773 548 SRGVELELSGELTPGLNLIAGYTYTDAKITKDADALEGKRLTNVPRHTA--SLWTTYRFPSGAL-KGLGLGGgvryVGER 624
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506355249 602 YFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYmngSSAVAQVNMGRTVGINTRIDF 672
Cdd:COG4773 625 YGDAANTFTLPSYTLVDAGARYDLGKNWTLQLNVNNLFDKKYYASSG---SRGYVYYGAPRNVRLSLSYKF 692
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
211-671 |
9.27e-38 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 146.84 E-value: 9.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 211 GSDDLGGTRASIGNVKLRLAPDDQPWEMGFAASRECTRATQDAYVGWNDikgrklsisdgsPDPYMRRCTDSQTLSGKYT 290
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYY------------GRDYSDTDRKRLSLGYDYD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 291 TDD---WVFNLI------SAWQQQHYSRTFPSGSLIVNMPQRWNQDVQELRAATLGDARTVDMVFGLYRQ------NTRE 355
Cdd:pfam00593 71 LGDglsWLSTLRlglrysSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRtagldyRRLD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 356 KLNSAYDMPTMPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHgsmlgNPFGDQGKSNDDQVLGQL 435
Cdd:pfam00593 151 DDAYDPYDPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDG-----NGGGDNFSRSYSAFSPRL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 436 SAGYMLTDDWRVYTRVAQGYK-PSGYNIVPTAGLDAKPFV--------AEKSINYELGTRYETAEVTLQAATFYTHTKDM 506
Cdd:pfam00593 226 GLVYKPTDNLSLYASYSRGFRaPSLGELYGSGSGGGGGAVaggnpdlkPETSDNYELGLKYDDGRLSLSLALFYIDIKNL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 507 QLY-----SGPVGMQTLSNAGKADATGVELEAKWRFapgWSWDINGNVIR--SEFTNDSELYHGNRVPFVPRYgagssvN 579
Cdd:pfam00593 306 ITSdpdgpGLGGTVYTYTNVGKARIRGVELELSGRL---WGLGLSGGGYTytDADDDADADDTGNPLPNVPRH------T 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 580 GVIDTRYGALMPRLAVNLVGPH-------YFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYMNGS 652
Cdd:pfam00593 377 ANLGLTYDFPLGGWGARLGARYvgsgerrYGDAANTFKTPGYTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYSSGGG 456
|
490
....*....|....*....
gi 506355249 653 SAVAQVNMGRTVGINTRID 671
Cdd:pfam00593 457 NLGGYPGPGRTFYLGLSYK 475
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
20-648 |
1.39e-28 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 121.42 E-value: 1.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 20 ANAQTSQQDEsTLVVTAS--KQSSRSASAnnvSSTVVSAPEL-SDAGVTASDKLPRVlPGLNIENSGNMlfSTISLRGVS 96
Cdd:PRK13483 25 AQAAPDKTME-TVVVTASgyEQQIRDAPA---SISVITREDLeNRFYRDLTDALLDV-PGVVVTGGGDR--TDISLRGMG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 97 SAqdfynpaVTL-YVDGVPQLSTNT-------------IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPR 162
Cdd:PRK13483 98 SQ-------YTLiLVDGKRQSSRETrpnsdgpgveqawTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 163 GYIEGGV------SSRDSYRSKFNLSGPIQDGLL----YGSVTlLRQVDDGDminpatgsDDLGGTRASIGNVKLRLAPD 232
Cdd:PRK13483 171 GEVRLDTtlqensDSGNVYQANFFVNGPLIKDLLglqlYGQYT-QREEDDIE--------GGYRDKDARSLTAKLALTPN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 233 DQPwEMGFaasrECTRATQ--DAYVGwndikgrkLSISDGSPDPYMRR---CTDSQTL--SGKYT---TDDWVFNLISAW 302
Cdd:PRK13483 242 EDH-DIML----EVGTSNQerDSTVG--------KTVAPLAPGESCGRrgcPESSTTEyeRSTVSlshTGRWDFGTSDTY 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 303 QQQHYSRTFPSGSLIVNMpqrwnqDVQELRAATLGDARTvdMVFGLYRQNtrEKLNSAydmpTMPYLSSTGYTTAETLAA 382
Cdd:PRK13483 309 IQHEEFDNKSREMKIKNT------DFQSSLVAPLGQEHT--LTFGAAYNH--QDLTDE----TSNQISDLTDISRTQWAV 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 383 YSDLTWHLTDRFDIGGGVRFSHDKSstqyhgsmlgnpFGdqgksndDQVLGQLSAGYMLTDDWRVYTRVAQGYK-PSGYN 461
Cdd:PRK13483 375 FSEDEWRIADDFALTGGLRLDHDEN------------FG-------GHVSPRVYGVWNLAPSWTVKGGVSTGFRaPSLRQ 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 462 IVPTAGL-----------DAKPfvaEKSINYELGTRYETAEVTLQAAT-FYTHTKD---------MQLYSGP----VGMQ 516
Cdd:PRK13483 436 TTPDWGQvsrggniygnpDLKP---ETSLNKELGLYYDLGSGLTASLTvFYNEFKDkitrvacpaTQCTDGPnqfgADPT 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 517 TLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEftNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALmprLAVN 596
Cdd:PRK13483 513 TYVNIDEAVTQGVEASLSYPITSTLSLSGNYTYTDSE--QKSGAYKGSPLNQLPKHLFQASLNWEPTDRLNSW---ARVN 587
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 506355249 597 LVG----PHYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRR--YRTYGY 648
Cdd:PRK13483 588 YRGeesqPTTGPSSSSFIAPSYTFLDLGANYQLTDNLKLSAGIYNLFDKEinYEEYGY 645
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
31-672 |
4.96e-27 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 116.74 E-value: 4.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 31 TLVVTASKQSSRSASANNV---SSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVssaQDFYnpaVT 107
Cdd:TIGR01786 2 TITVTATRTADPQRRDLSVtpaSVSVISREQLKSQQVRNLRDLLRYEPGVSVVEGGRGGSQGINIRGL---DKNR---VA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 108 LYVDGVPQLSTNTIQALTD----------VQSVELLRGPQGTLYGKSAQGGIINIVTQQPdstpRGYIEG----GVSSRD 173
Cdd:TIGR01786 76 VLVDGIRQNTSYGGQGSTFyainsidpelIKSIEIVKGASSSLYGSGALGGVVAFRTKDA----ADLLKPgkdlGGLSKL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 174 SYRSKfnlsgpiqDGLLYGSVTLLRQVDDGDMINPAT--GSDDLG-GTRASIGNVKLRLAPDDQ---------------P 235
Cdd:TIGR01786 152 GYSSA--------NNRFTQSVAAAGRNDDVDALVQATyrRGHELKnGNKANIGNESKRSKPNPSdyksqsflaklgwqlN 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 236 WEMGFAASRECTRATQDAYvgwNDIKGRKLSISDGSPDPYM-RRCTDSQTLSGKYTTD-------DWvFNLISAWQQQHY 307
Cdd:TIGR01786 224 DAHRLGLSLEYTQTDYDEP---EMTNTSYLTKPLGAPLLSStVVLGDSKTRDRRTGLDyelnpdnSW-LDTVKLALDKQY 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 308 SRTFP---------SGSLIVNMPQRWNQDVQ----ELRAATLGDARTVDMVFGLYRQNTREKLNSAY-DMPTMPYLSSTG 373
Cdd:TIGR01786 300 IQLYNylnatsasdYPGVDKNGRYKDKYDYYtlgfDTNNKIEFSVHSLSLTYGLDRFKDKVSTGDSRrNLPTAAYNLYGY 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 374 Y-----TTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSmLGNPFGDQGKSNddqVLGQLSAGYMLTDDWRVY 448
Cdd:TIGR01786 380 EgenrpVKGSNFGLFLQDNIKLGDWLSLSAGLRYDHYKTDPKADES-KDYGAISKTYSR---WSPSLGLTYKPTPWLTLY 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 449 TRVAQGYKP---------------SGYNIVPTagLDAKPfvaEKSINYELGTRYETAEVTLQAATFYTHTKDM------- 506
Cdd:TIGR01786 456 YSYSQGFRApsfdelygtgahpggGPYTFLPN--PNLKP---ETSKNWEIGINLHFDQLDFKVSYFRNDYKDFidlgigv 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 507 -----QLYSGPVGMQTLSNAGKADATGVELEAKWRFAP------GWSWDINGNVIRSE-FTNDSELYHGN--RVPFVPRY 572
Cdd:TIGR01786 531 takgnMAQVGSNTITNYVNIDNARIRGIELSGRYDLGSffsgpdGWTTTLKYGYTKGKdSDTNPWLNAITplKVVLGLGY 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 573 GAGSSVNGV-IDTRYGALMPRLAVNLVGPHYFD--GDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYG-- 647
Cdd:TIGR01786 611 DHPDEKWGVgLTLTFSGAKDAVDAYATYYENGEaaKAGPLRTPSYTVVDLYGYYKPNKNLTLRFGVYNLLDRKYTTWEsa 690
|
730 740
....*....|....*....|....*
gi 506355249 648 YMNGSSAVAQVNMGRTVGINTRIDF 672
Cdd:TIGR01786 691 RQAGPLATGYTAPGRNYKASVEYKF 715
|
|
| TonB-B12 |
TIGR01779 |
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane ... |
19-648 |
3.84e-24 |
|
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins]
Pssm-ID: 273802 [Multi-domain] Cd Length: 614 Bit Score: 107.26 E-value: 3.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 19 IANAQTSQQDESTLVVTASK-QSSRSASANNVssTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNM-LFSTISLRGVS 96
Cdd:TIGR01779 18 SALHANEAQPLDTVVVTANRfAQTASQTLAPV--TIITRQDIERTQAKSLPELLRRLPGVSIAQNGGRgQNTSLFLRGTE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 97 SAQdfynpaVTLYVDGVP-QLSTNTIQALTD-----VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVS 170
Cdd:TIGR01779 96 SDH------VLVLIDGIRfGSAAAGAADFQQlpvelVERIEYVRGPRSSLYGSEAIGGVINIITRRRSGGQGTTLSAGLG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 171 SRDSYRSKFNLSGPIQDGLLYgSVTLLRQVDDGDMINPATGS---DDLGGTRASIGNVKLRLAPDDQpWEMGFAASRECT 247
Cdd:TIGR01779 170 SLDYQEYSIASGVAIGENGWY-SVALGTESTKGINVRPGGPGvydPDRDGFRSDSLLLGGGHRFDES-WSLFVNALRYEN 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 248 RATQDAYV-GWNDIKGRKLsisdgspdpymrrctDSQTLSG--KYTTDDWVFNLISAWQ-QQHYSRTFPSGSLIVNMPQR 323
Cdd:TIGR01779 248 RNDYDNYSfGTRLYKEAEK---------------GDQSFTGgrQRQSERDVSELTLSTGkSKDWDYAYSKGRYSSTSDTR 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 324 WNQDVQELRAATLGDARTvdmvfglyrqntrekLNSAYDMPTMPYLSSTGYTT---------AETLAAYSDLTWHLTDRF 394
Cdd:TIGR01779 313 EQRNIQWQNDLLVGDGWV---------------LAGGVDWQKDSIISSTADKEddrsntaafAQVLQQWGQQLLEASLRR 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 395 DigggvrfshDKSStqyhgsmlgnpFGDQGKsnddqvlGQLSAGYMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFV 474
Cdd:TIGR01779 378 D---------DNQQ-----------FGSHTT-------GSIAWGYQFIEELRFTASYGTAFKAPNLNQLYYPSYGNPNLQ 430
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 475 AEKSINYELGTRYETAEVTLQAATFYTHTKDMQLY-SGPVGMQtlSNAGKADATGVELEAKWRFAPgwsWDINGNVirsE 553
Cdd:TIGR01779 431 PETSKSAELGFYGLFSGGKWSISGYRTKINDLIDYdSHPKGYP--NNIGEARIKGVEATAEFATGG---WTHQLSV---D 502
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 554 FTNDSELYHGNRVPFVPRYgagsSVNGVIDTRYGALMPRLAVNLVGPHYFDGDN-----QLRQGTYATLDSSLGWQATER 628
Cdd:TIGR01779 503 LLDAQNVNTGNTLPRRARQ----MYKWNADRAFEQFDWGASYQYVGKRYDDDYNtyptqNVRLGGYSLLDLRVSYYVTDS 578
|
650 660
....*....|....*....|.
gi 506355249 629 MNISVYVDNLFDRRYRT-YGY 648
Cdd:TIGR01779 579 WTVQGRIANLFDKDYETaYGY 599
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
25-647 |
4.89e-21 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 97.92 E-value: 4.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 25 SQQDESTLVVTAS--KQSSRSASAnnvSSTVVSAPELSD-AGVTASDKLPRVlPGLNIENSGNMlfSTISLRGVSSAqdf 101
Cdd:PRK13513 31 TATPTDTMVVTASgfQQRIQDAPA---SISVVTREQLENkAYRDVTDALKDV-PGVVVTGGGST--SDISIRGMAAK--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 102 ynpaVTLY-VDGVPQLSTNT-------------IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEG 167
Cdd:PRK13513 102 ----YTLIlVDGKRVDTRSTrpnsdgsgieqgwLPPLAAIERIEVVRGPMSSLYGSDAMGGVINIITRKVQKEWHGSLRA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 168 GVS------SRDSYRSKFNLSGPIQDGLLYGSVT-LLRQVDDGDMINpatGSDDlggTRASIGNVKLRLAPDDQPwEMGF 240
Cdd:PRK13513 178 DATlqedskSGDIFQTNAYASGPLIDGLLGLKVSgLLSHRSEDKIID---GYNE---QRMRNGTATFSLTPDDNN-EFDF 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 241 AASREctraTQDAyvgwNDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYTtddwvFNLISAWQQQHYSRTfPSGSL---- 316
Cdd:PRK13513 251 EIGRY----VQDR----NSTPGRTLALNGTNSDTQYDRNNYAITHNGYYD-----FGNSTSYIQRDETRN-PSRQMksvd 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 317 -IVNmpqrwNQDVQELRAATLgdartvdMVFGLYR----QNTREKLNSAYDMPTMpylsstgytTAETLAAYSDLTWHLT 391
Cdd:PRK13513 317 tIFN-----TQTSFLLDDHTL-------SLGGQYRyeelYDKGNQLPSASDLNKL---------TRWSWALFAEDEWQMT 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 392 DRFDIGGGVRFSHDKS-STQYHGSMLGNpfgdqgKSNDDQ--VLGQLSAGY------MLTDDWrvytrvAQGYKPSGYNI 462
Cdd:PRK13513 376 NDFALTGGIRMDQDQNyGTHWTPRLYGV------WHLADQwtLKGGVSTGYrspdlrQATDNW------GQLTGGGGLPA 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 463 VPTAGLDAKPfvaEKSINYELGTRYETAEVTLQAAT-FYTHTKD--MQL-------------YSGPVG--MQTLSNAGKA 524
Cdd:PRK13513 444 LILGNSDLKP---EKSISQEIGILWDNQENLNASVTlFNTDFKDkiTEVrncdttntdgqcvFNGINYdfISDRINVDKA 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 525 DATGVELEAKWRFAPGWSWDINGNVIRSEftNDSELYHGNRVPFVPRYGAGSSVNgvidtrYGALmPRLA----VNLVG- 599
Cdd:PRK13513 521 NMRGVEATFNWDINQAWSLATNYTFTQSE--QKSGAFAGQPLNQMPKHMANATLN------WQTT-EDFAtwirINYRGk 591
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 506355249 600 -PHYFDgDNQLRQGT--YATLDSSLGWQATERMNISVYVDNLFDRR--YRTYG 647
Cdd:PRK13513 592 tSEYLN-RTSMGSGTpsYTFVDLGASYQLTKELRLMGGVYNLLDKRvdIDVND 643
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
33-234 |
4.99e-20 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 90.70 E-value: 4.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 33 VVTASKqSSRSASANNVSSTVVSAPELSDAGV-TASDKLPRVlPGLNIENSGNML-FSTISLRGVSSAQdfynpaVTLYV 110
Cdd:COG4206 2 VVTATR-LEQSKSDLTGSVTVIDAEELERSGAtSLADALRRV-PGVQVSSSGGPGsAASISIRGLGSNQ------TLVLI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 111 DGVPQLSTNTIQA------LTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGP 184
Cdd:COG4206 74 DGVPLNDPSLGGVdlslipPDDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGG 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 506355249 185 IQDGLLYGSVTLLRQvDDGDMINPATGSDDlgGTRASIGNVKLRLAPDDQ 234
Cdd:COG4206 154 AGKFSYSLSASYRRS-DGYRYNDPDLRNND--GYENTSLNARLGYKLGDN 200
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
29-655 |
5.56e-19 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 91.24 E-value: 5.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 29 ESTLVVTASKQSSRSASANnVSSTVVSAPELSDAGVTASDKLPRVLPGLNIENS-GNMLFSTISLRGVSSAQDFynpavt 107
Cdd:PRK13486 25 EDVMIVSASGYEKKLTNAA-ASVSVISQEELQSSQYHDLAEALRSVEGVDVESGtGKTGGLEISIRGMPASYTL------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 108 LYVDGVPQ-------------LSTNTIQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDS 174
Cdd:PRK13486 98 ILIDGVRQggssdvtpngfsaMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLNLQES 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 175 YR----SKFNL--SGPIQDGLLYGSVTLLRQVDDGDMInpaTGSDDLGGTRasignvkLRLAPDDQPWEMGfaaSRECTR 248
Cdd:PRK13486 178 NKwgnsSQFNFwsSGPLVDDSVSLQVRGSTQQRQGSSV---TSLSDTAATR-------IPYPTESQNYNLG---ARLDWK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 249 ATqDAYVGWNDIkgrklsisDGSPDPYMRRCTDSQTLSGKYT-TDDWVFNLISA----------WQQQ-HYSRTFPSGSL 316
Cdd:PRK13486 245 AS-EQDVLWFDM--------DTTRQRYDNRDGQLGSLTGGYDrTLRYERNKISAgydhtftfgtWKSYlNWNETENKGRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 317 IVN---MPQRW------------NQDVQELRAATLGDARTVdMVFGLYrQNTReklnsaydMPTMPYLSSTGYT-TAETL 380
Cdd:PRK13486 316 LVRsvlKRDKWglagqprelkesNLILNSLLLTPLGESHLV-TVGGEF-QSSS--------MKDGVVLASTGETfRQKSW 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 381 AAYSDLTWHLTDRFDIGGGVRFSHdksstqyhgsmlgnpfgdqgksnDDQVLGQLSA-GYM---LTDDWRVYTRVAQGYK 456
Cdd:PRK13486 386 SVFAEDEWHLTDALALTAGSRYEH-----------------------HEQFGGHFSPrAYLvwdVADAWTLKGGVTTGYK 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 457 P-------------SGYNIVPTAG-LDAKPfvaEKSINYELGTRYET-AEVTLQAATFYT-HTKDMQLYSGPVGMQTLSN 520
Cdd:PRK13486 443 AprmgqlhkgisgvSGQGKTNLLGnPDLKP---EESVSYEAGVYYDNpAGLNANVTGFMTdFSNKIVSYSINDNTNSYVN 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 521 AGKADATGVELEAKWrfaPGWSWDI----NGNVIRSEFTNDSElyHGNRVPFVPRYGAGSSVNGVI--------DTRYGA 588
Cdd:PRK13486 520 SGKARLHGVEFAGTL---PLWSEDVtlslNYTWTRSEQRDGDN--KGAPLSYTPEHMVNAKLNWQIteevaswlGARYRG 594
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506355249 589 LMPRLAVNL-----VGPHYFDGDNQLRQGtYATLDSSLGWQATERMNISVYVDNLFDRRYRTYG-YMNGSSAV 655
Cdd:PRK13486 595 KTPRFTQNYsslsaVQKKVYDEKGEYLKA-WTVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSlYSAGKSTL 666
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
19-672 |
1.15e-17 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 86.98 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 19 IANAQTSQQD-ESTLVVTAS--KQSSRSASAnnvSSTVVSAPELSDAGVTASDKLPRVLPGLNIenSGNMLFSTISLRGV 95
Cdd:PRK13484 19 ISSGYASSDKkEDTLVVTASgfTQQLRNAPA---SVSVITSEQLQKKPVSDLVDAVKDVEGISI--TGGNEKPDISIRGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 96 SSAQDFynpavtLYVDGVPQLSTNT------------IQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTP-- 161
Cdd:PRK13484 94 SGDYTL------ILVDGRRQSGRESrpngsggfeagfIPPVEAIERIEVIRGPMSSLYGSDAIGGVINIITKPVNNQTwd 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 162 -----RGYIEGGVSSRDSYRSKFNLSGP-IQDGL---LYGSVTLLRQvddgDMINPATGSDDLGGTRAsignvKLRLAPD 232
Cdd:PRK13484 168 gvlglGGIIQEHGKFGNSTTNDFYLSGPlIKDKLglqLYGGMNYRKE----DSISQGTPAKDNKNITA-----TLQFTPT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 233 DQP---WEMGfAASRECTRATQDAYVGWNDIKGRKlsisdgSPDPYMRRCTDSQTLSGKYTTD-DWVFNLISAWQQQhYS 308
Cdd:PRK13484 239 ESQkfvFEYG-KNNQVHTLTPGESLDAWTMRGNLK------QPNSKRETHNSRSHWVAAWNAQgEILHPEIAVYQEK-VI 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 309 RTFPSGSliVNMPQRWNQDVQELR---AATLGDARTVD------MVFGLYRQNTREKLNSAYDMPTmpylSSTGYTTAET 379
Cdd:PRK13484 311 REVKSGK--KDKYNHWDLNYESRKpeiTNTIIDAKVTAflpenvLTIGGQFQHAELRDDSATGKKT----TETQSVSIKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 380 LAAYSDLTWHLTDRFDIGGGVRFSHDksstQYHGSMLgNPfgdqgksnddqvlgQLSAGYMLTDDWRVYTRVAQGYK-PS 458
Cdd:PRK13484 385 KAVFIENEYAATDSLALTGGLRLDNH----EIYGSYW-NP--------------RLYAVYNLTDNLTLKGGIAKAFRaPS 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 459 GYNIVPTAGL-------------DAKPfvaEKSINYELGTRYETAEVTLQAATFY-THTKDmQLYS------GPV-GMQT 517
Cdd:PRK13484 446 IREVSPGFGTltqggasimygnrDLKP---ETSVTEEIGIIYSNDSGFSASATLFnTDFKN-KLTSydigtkDPVtGLNT 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 518 L--SNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHGNRV---PF--VPRYGAgssvNGVIDTRYGALM 590
Cdd:PRK13484 522 FiyDNVGEANIRGVELATQIPVYDKWHVSANYTFTDSRRKSDDESLNGKSLkgePLerTPRHAA----NAKLEWDYTQDI 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 591 PRLA-VNLVGPHYFDGDN------QLRQGtYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGYMNGSsavAQVNMGRT 663
Cdd:PRK13484 598 TFYSsLNYTGKQIWAAQRngakvpRVRNG-FTSMDIGLNYQILPDTLINFAVLNVTDRKSEDIDTIDGN---WQVDEGRR 673
|
....*....
gi 506355249 664 VGINTRIDF 672
Cdd:PRK13484 674 YWANVRVSF 682
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
26-641 |
3.37e-17 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 85.71 E-value: 3.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 26 QQDESTLVVTAS--KQSSRSASAnnvSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMLfSTISLRGVSSAQdfyn 103
Cdd:PRK10064 27 DDDGETMVVTASavEQNLKDAPA---SISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNR-KGVSIRGLDSSY---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 104 paVTLYVDGVPQLSTNTIQALTD----------VQSVELLRGPQGTLYGKSAQGGIINIVTQQ----------PDSTPRG 163
Cdd:PRK10064 99 --TLILIDGKRVNSRNAVFRHNDfdlnwipvdaIERIEVVRGPMSSLYGSDALGGVVNIITKKigqkwhgtvtVDTTIQE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 164 YIEGGvssrDSYRSKFNLSGPIQDGLL----YGSVTlLRQVDDGDMINPATG--SDDLGGTRASIGNVKLRLAP-DDQPW 236
Cdd:PRK10064 177 HRDRG----DTYNGQFFTSGPLIDGVLgmkaYGSLA-KREKDDPQNSTTTDTgeTPRIEGFTSRDGNVEFAWTPnQNHDF 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 237 EMGFAASRE--------CTRATQDAY---------VGWNDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYttddwvfnli 299
Cdd:PRK10064 252 TAGYGFDRQdrdsdsldKNRLERQNYslshngrwdYGNSELKYYGEKVENKNPGNSSPITSESNSIDGKY---------- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 300 sawqqqhysrTFPSGSlivnmpqrWNQDVqelraaTLGdartvdmvfGLYRQntrEKLNSAYDMPTmpylSSTGYTTAET 379
Cdd:PRK10064 322 ----------TLPLTA--------INQFL------TFG---------GEWRH---DKLSDAVNLTG----GTSSKTSASQ 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 380 LAAYSDLTWHLTDRFDIGGGVRFSHDKSstqyhgsmlgnpFGDQGKSNDDQVlgqlsagYMLTDDWRVYTRVAQGYK-PS 458
Cdd:PRK10064 362 YALFVEDEWRIFEPLALTTGVRMDDHET------------YGDHWSPRAYLV-------YNATDTVTVKGGWATAFKaPS 422
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 459 GYNIVPTAGL-------------DAKPfvaEKSINYELGTRYETAE-----VTLQAATFYTHTKDM------------QL 508
Cdd:PRK10064 423 LLQLSPDWTSnscrgackivgspDLKP---ETSESWELGLYYMGEEgwlegVESSVTVFRNDVDDRisisrtsdvnaaPG 499
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 509 YSGPVGMQTLS-----------NAGKADATGVELEAKWRFAPGWSWDINgnvirSEFTNDSELYHGNRVPF--VPRYGAg 575
Cdd:PRK10064 500 YQNFVGFETNGrgrrvpvfryyNVNKARIQGVETELKIPFNDEWKLSLN-----YTYNDGRDVSNGENKPLsdLPFHTA- 573
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506355249 576 ssvNGVIDTRYGALMP---RLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDR 641
Cdd:PRK10064 574 ---NGTLDWKPLALEDwsfYVSGNYTGQKRADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDK 639
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
30-672 |
4.27e-17 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 85.14 E-value: 4.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 30 STLVVTAsKQSSRSASANNVSSTVVSAPELSDAGV-TASDKLPRVlPGLNIENSGNMLFSTISLRGVssaQDFYnpaVTL 108
Cdd:TIGR01785 2 DTVTVTA-TRTRQVLSEAPASVSVISGEQIESKQAnNLADALNTV-PGVDVTGGGRPPGQSINIRGL---QDNR---VLV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 109 YVDGVPQ--------LSTNTIQALTdVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSY----- 175
Cdd:TIGR01785 74 VVDGARQnyqrggahNGSLFVDPEL-LKRIEIVKGPSSSLYGSGALGGVVAFRTKDAADLLRPGQLFGGLAKLSYgsnnn 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 176 RSKFNLSGPIQ-----DGLLYGSVTL---LRQVDDGDMINPATGSDDLGGTrasiGNVKLrlaPDDQPWEMGFAASRECT 247
Cdd:TIGR01785 153 SFGGSVAVAGRlddnlDALVAATYRDggnYRNGNKEEATNSAYVQKNLLAK----LGWQL---DDAQRLEFSYFTTEGSL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 248 RATQDAYVGWNDIKGRKLSISDGSpdpymrRCTDSQTLSGKYTTDD--WVFNLISAWQQQHYSRTFPSGSlivnMPQRWN 325
Cdd:TIGR01785 226 DEAQNSGPGTEYVLGSSSTLLASS------TRDRSATLTYNWTPEDnpWLDATASLYYNRTENDNDRSAR----GVGREE 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 326 QDVQELRAATLGDARTVD------MVFGL-YRQNTREKLNSAYD-MPTMPYLSSTGYTTAETLAAYSDLTWHlTDRFDIG 397
Cdd:TIGR01785 296 GYQYTTYGATLQNTSRFDvaswstLTYGVdWMKDKRRTESFDPNsVTTIVPNPPSAKEYFFGLFLQDNIPLL-DDRLTLS 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 398 GGVRFSHdksstqYHGSMLGNPFGDQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYK----------------PSGYN 461
Cdd:TIGR01785 375 AGLRYDH------YKLSPKTTADTEAVDRSYSRWSPSLGLSYKPVDWLTLYASYSQGFRapsidelygtgdhpgtPGGYT 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 462 IVPTAGLdaKPfvaEKSINYELGTRYETAEVTLQ-------AATFYTHTKDM---------QLYSGPVGMQTLSNAGKAD 525
Cdd:TIGR01785 449 FAPNPNL--KP---ETSKTWELGANLSFDNLLLDndqlqfkVAYFYNDVKDFidltigvtdNVTAGMNNITQYVNIDGAR 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 526 ATGVELEAKWRFApGWSWDINGNVIRSEFTNdSELYHGNrvpfVPRYGAGSSVNGVIDTRygalmpRLAVNLVGPHYFD- 604
Cdd:TIGR01785 524 IRGIEASASYDAG-LWATGLSYGYTIGKDQN-TNQWLSN----IPPLKLVVTVGYRFPDR------RLDLGAKAAYYERq 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 605 ----------GDNQLRQGTYATLDSSLGWQATER--MNISVYVDNLFDRRYRTYgymngsSAVAQVNMGRTVGINTRIDF 672
Cdd:TIGR01785 592 sespttedvaANGLLTTPGYTVVDLYATYQPNAVkgLTVRFGVNNLTDRKYTPA------QSVPGAGPGRNFKGSVKYQF 665
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
24-672 |
1.09e-15 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 80.84 E-value: 1.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 24 TSQQDESTLVVTASKQSSRSASannVSstVVSAPELSDAGVtASD--KLPRVLPGLNIenSGNmlfST---------ISL 92
Cdd:PRK13524 33 TPASHEDTIVVTAAEQNLQAPG---VS--TITAEDIRKRPP-ANDvsEIIRTMPGVNL--TGN---STsgqrgnnrqIDI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 93 RGVSsaqdfynPAVTL-YVDGVPQLSTNTIQ----------------ALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQ 155
Cdd:PRK13524 102 RGMG-------PENTLiLIDGKPVSSRNSVRygwrgerdtrgdtnwvPPEMIERIEVLRGPAAARYGNGAAGGVVNIITK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 156 QPDSTPRGYIEGGVSSR------DSYRSKFNLSGPIQDGL---LYGSVTlLRQVDDGDmINPATGSDDLGGTRASIG--- 223
Cdd:PRK13524 175 KPTGEWHGSWNTYFNAPehkaegATKRTNFSLSGPLGDELsfrLYGNLN-KTQADAWD-INQGHQSARTGSYAGTLPagr 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 224 --------NVKLRLAPDDQ---PWEMGFaaSREctratQDAYVG--WNDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYt 290
Cdd:PRK13524 253 egvinkdiNGLLRWDFAPLqslELEAGY--SRQ-----GNLYAGdtQNTNSDALVKSLYGKETNRMYRQNYALTHRGGW- 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 291 tdDWVFNLISAWQqqhYSRT----FPSG------SLIVNMPQRWNQdvqelraATLGDART---VDMVFGLYRQNT---- 353
Cdd:PRK13524 325 --DNGVSTSNYAQ---YEHTrnsrLPEGlaggteGIFNEKATQFST-------IDLDDVMLhseVNLPFDLLVNQTltlg 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 354 ----REKLNSAYDMP-------TMPYLSSTG---YTTAETLAAYSDLTWHLTDRFDIGGGVRFSHdksstqyHgSMLGNP 419
Cdd:PRK13524 393 tewnQQRMKDPSSNTqaltsggAIPGVSATGrspYSKAEIFSLFAEDNMELTDSTMLTPGLRFDH-------H-SIVGNN 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 420 FGDqgksnddqvlgQLSAGYMLTDDWRVYTRVAQGYK-PSGYNIVPT-----------AGLDAKPFV-------AEKSIN 480
Cdd:PRK13524 465 WSP-----------SLNLSQGLGDDFTLKMGIARAYKaPNLYQTNPNyilyskgqgcyASAGNGCYLqgnddlkAETSVN 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 481 YELGTRYETAevTLQA-ATFYTHTKDMQLYSGPVGMQTLS----------NAGKADATGVELEAKWRFAPGWSWDINGN- 548
Cdd:PRK13524 534 KEIGLEFKRD--GWLAgLTWFRNDYRNKIEAGYVPVGTNSvgktdiyqweNVPKAVVEGLEGTLNVPVSETVNWTNNLTy 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 549 VIRSEftNDSElyhGNRVPFVPRYGAGSSVNGVID---------TRYGALMPRlAVNLVGPHYfDGDNQLRQGTYATLDS 619
Cdd:PRK13524 612 MLQSK--NKTT---GDPLSIIPEYTLNSTLSWQATedlslqstfTWYGKQKPK-KYNYKGQPV-TGSATKEVSPYSIVGL 684
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 620 SLGWQATERMNISVYVDNLFDRR-YR------TYGYMNGSSAVAQVNMGRTVGINTRIDF 672
Cdd:PRK13524 685 SATYDVTKNVSLTGGVDNLFDKRlWRegnaqtTGDLIAGAGAYTYNEPGRTYYMSLNTHF 744
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
49-149 |
4.42e-14 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 68.45 E-value: 4.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 49 VSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQdfynpaVTLYVDGVPQLSTNTIQA----- 123
Cdd:pfam07715 7 GSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGGGSSISIRGFGSNR------VLVLVDGVPLNSGGGGSVdlnsi 80
|
90 100
....*....|....*....|....*..
gi 506355249 124 -LTDVQSVELLRGPQGTLYGKSAQGGI 149
Cdd:pfam07715 81 dPEDIERVEVLKGPASALYGSGAIGGV 107
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
72-645 |
2.02e-12 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 70.56 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 72 RVLPGLNIE-NS-----GNMlfSTISLRGVSsaqdfynPAVTL-YVDGVPQLSTNTIQ----------------ALTDVQ 128
Cdd:PRK13528 75 RKMPGVNLTgNSasgtrGNN--RQIDIRGMG-------PENTLiLIDGVPVTSRNSVRyswrgerdtrgdtnwvPPEMVE 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 129 SVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRG----YIEGGVSSR--DSYRSKFNLSGPI-QDGL---LYGSVTlLR 198
Cdd:PRK13528 146 RIEVIRGPAAARYGSGAAGGVVNIITKRPTNDWHGslslYTNQPESSKegATRRANFSLSGPLaGDALtmrLYGNLN-KT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 199 QVDDGDMINPATGSDDLG--GTRASIGNVKLRLAPDDQ---PWEMGFaaSRECTRATQDAYVGWNDIKGRKLsISDGSPD 273
Cdd:PRK13528 225 DADSWDINSSAGTKNAAGreGVRNKDINGVLSWKMTPQqilDFEAGY--SRQGNIYAGDTQNSNSSAVTESL-AKSGKET 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 274 PYMRRCTDSQTLSGKYttdDW-VFNLISAWQQQHYSRTFP--SGSLIVNMPQRWNQDVQELRA-ATLGDART-----VDM 344
Cdd:PRK13528 302 NRLYRQNYGLTHNGIW---DWgQSRLGFYYEKTNNTRMNEglAGGGEGRITADQTFTTSRLESyRTSGELNVplnwlFEQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 345 VFGLYRQNTREKLNSAYDM------PTMPYLSS-----TGYTTAETLAAYSDLTWHLTDRFDIGGGVRFS-HDKSSTQYH 412
Cdd:PRK13528 379 TLTVGAEWNRDELNDPSSTsltvkdGDIGGISGsaadrSSKNKSEISALYVEDNIEPVPGTNLIPGLRFDyHSEFGSNWS 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 413 GSM-----LGNPFGDQG------KSNDdqvLGQLSAGYMLtddwrvYTR---VAQGYKPSGYNIVPTAGLDakpfvAEKS 478
Cdd:PRK13528 459 PSLnlsqeLGDYFKVKAgiarafKAPN---LYQSSEGYLL------YSRgngCPKDITSGGCYLVGNKNLD-----PEIS 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 479 INYELGTRYETAEVTLQAATFYTHTKDmQLYSGPVGMQTLS---------NAGKADATGVELEAKWRFAPGW-SWDINGN 548
Cdd:PRK13528 525 VNKEIGLEFTVDDYHASVTYFRNDYQN-KIVAGDDVIGRTAsgayilqwqNGGKAVVEGLEGNLLVPLMKDRlNWNTNAT 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 549 -VIRSEfTNDSelyhGNRVPFVPRYgagsSVNGVID-------------TRYGALMPRlAVNLVGPHYFDGDNQLRQGTY 614
Cdd:PRK13528 604 yMITSE-QKDT----GNPLSVIPKY----TINSTLDwqitqalsanvnwTLYGKQKPR-THAESRSEETGGLSGKELGAY 673
|
650 660 670
....*....|....*....|....*....|..
gi 506355249 615 ATLDSSLGWQATERMNISVYVDNLFDRR-YRT 645
Cdd:PRK13528 674 SLVGVNVNYDINKNLRLNVGVSNLFDKQiYRE 705
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
26-647 |
8.43e-12 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 68.25 E-value: 8.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 26 QQDESTLVVTAS--KQSS-----------RSASA---------NNVSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSG 83
Cdd:PRK10044 36 EPKEETITVTAApaPQESawgpaatiaakRSATGtktdtpiekTPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 84 -NMLFSTISLRGVSSAQDFYNpavtLYVDGVPQLSTNTIQALTD---VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDS 159
Cdd:PRK10044 116 aSNTYDHLIIRGFAASGQSQN----NYLDGLKLQGNFYNDAVIDpymLERAELMRGPVSVLYGKSNPGGLLNMVSKRPTT 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 160 TPRGYIEGGVSSRDSYRSKFNLSGPIQD-GLLYGSVTLLRQVDDGDMINPATgsddlggTRASIGNvKLRLAPDDQpwem 238
Cdd:PRK10044 192 EPLKEVQFKMGTDNLFQTGFDFSDALDDdGVYSYRLTGLARSANAQQKGSEE-------QRYAIAP-SFTWRPDDK---- 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 239 gfaasrecTRAT---------QDAYVGW--------NDIKGRKLSIS--DGSPDPYMRRCTDSQTLSGKYTTDD-WVF-- 296
Cdd:PRK10044 260 --------TNFTflsyfqnepETGYYGWlpkegtvePLPNGKRLPTDfnEGAKNNTYSRNEKMVGYSFDHEFNDtFTVrq 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 297 NLISAWQQQHYSRTF------PSGSLIVNMPQRWNQDVQELRAATLGDAR----TVD--MVFGLYRQNTREKLNSAY--- 361
Cdd:PRK10044 332 NLRYAENKTSQRSVYgygvcsDKGHYLNRGYVVDDEKLQNFSVDTQLQSKfatgDVDhtLLTGVDFMRMRNDINAWFgya 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 362 ---DMPTMPYLSSTGYTTAETLAAYSDLT-----------------WHLTdrfdIGGGVRFSHDKSSTQYHGSMlgnpfg 421
Cdd:PRK10044 412 dsvPLLNLYGPVNTDFDFNANSGPYQILNkqkqtglyvqdqaewdkWLVT----LGGRYDWADQSSLNRVNGTT------ 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 422 dqGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKPSGYnivptAGLDAKPFVAEKSINYELGTRY--ETAEVTLQAATf 499
Cdd:PRK10044 482 --DKRDDKQFTWRGGVNYLFDNGITPYFSYSESFEPSSG-----TGKDGNIFAPSKGKQYEAGVKYvpKDRPIVVTGAV- 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 500 YTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWrfapgwSWDINGNVIRS------EFTNDSeLYHGNRVPFVPRYG 573
Cdd:PRK10044 554 YQLTKTNNLTADPENSFFSVQGGEIRARGVELEAKA------ALSANVNVTGSytytdaEYTTDT-TYKGNTPAQVPKHM 626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 574 AgsSVNG---VIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQ-ATERM---NISVYVDNLFDRRY--- 643
Cdd:PRK10044 627 A--SLWAdytFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVKYDlARFGMagsSVALNVNNLFDREYvas 704
|
....*.
gi 506355249 644 --RTYG 647
Cdd:PRK10044 705 cfNTYG 710
|
|
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
324-672 |
9.54e-10 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 61.97 E-value: 9.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 324 WNQDVQELRAATLGDARTVDMVFGLYRQNTREKLNSAYD--MPTMPYLSSTGYTTA-------------ETLAAYSDLTW 388
Cdd:TIGR01782 437 IIGATGASGLAGVPSDLAGAGLDGGLGGPLTGWDPADLDafLNAARGDAAGGGTYTyastapntytvteDTTAAYAMANF 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 389 HLTDRFDIGGGVRFSHDKSSTQYHGSMLGNPFGDQG------KSNDDQVLGQLSAGYMLTDD-------WRVYTR----- 450
Cdd:TIGR01782 517 DTGLRLRGNVGVRYERTDQTSDGWQSQPAANGTGSVlvpvsaDRDYTDVLPSLNLAYDLTDDlvlrfaaSKTITRpdfgd 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 451 VAQGYKPSGYNIVPTAGL-----DAKPFvaeKSINYELGTRYETAEVT-LQAATFYTHTKD-------MQLYSGPVGMQT 517
Cdd:TIGR01782 597 LAANTSLSDDGTGGTVTVsggnpDLKPY---ESDNLDLSLEWYFGPGGlLSAAVFYKDIKNfivtttsTETNDGGGGLVV 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 518 LS-------NAGKA-DATGVELEAKWRF--APGWsWD-----INGNVIRSEFTNDSELYHGNRVPF--VPRYgagsSVNG 580
Cdd:TIGR01782 674 AGvlvsrpvNGGKAgKIRGVELGYQQTFdfLPGP-LSgfgvqANYTYVDSEADPSVDGVQRRKLPLpgLSKN----TANA 748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 581 VIDTRYGALMPRLAVNLVGPHY------FDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTYGymNGSSA 654
Cdd:TIGR01782 749 TLYYEKGGFSARLSYNYRSDYLldvggsNINRLDRYVDPRGQLDLSASYQVSDHLSLGLQASNLTNEPSRWYT--GGKQR 826
|
410
....*....|....*....
gi 506355249 655 VAQ-VNMGRTVGINTRIDF 672
Cdd:TIGR01782 827 PREyVETGRTYMLGLRYKF 845
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
33-234 |
1.48e-08 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 57.89 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 33 VVTASKQSSRSASANNV---SSTVVSAPELSDAGVTAS-DKLPRVLPGLNIENSGN-----MLFstisLRGVSSAQdfyn 103
Cdd:PRK14050 62 VAKATATGSKTDTPITEipqSVSVVGRQEMDDRGVTNKvDEALRYTPGVLSQPFGTdgdtdWFY----IRGFDATQ---- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 104 paVTLYVDGVPQLSTNTIQALTD---VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFN 180
Cdd:PRK14050 134 --TGVFLDGLNLFSYGFGGFQIDpfmLERVEVLKGPASVLYGGSNPGGIVNMVSKRPLDEPLYYTEIGINSYGNAFTGFD 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 506355249 181 LSGPIQDGLLYgSVTLLRQVDDGDmiNPATGSDDLGGTRASignvKLRLAPDDQ 234
Cdd:PRK14050 212 VGDKLSDDGTV-RYRVTGKVAGGD--NYSDYSEDLRGFIMP----QITYAPDDA 258
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
22-171 |
2.12e-08 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 57.31 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 22 AQTSQQDesTLVVTAS--KQSSRSASAnnvSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNM-LFSTISLRGVSSA 98
Cdd:PRK10641 20 AQDTSPD--TLVVTANrfQQPVSTVLA---PTTVVTRDDIDRWQSKSVNDVLRRLPGVDIAQNGGLgQLSSLFIRGTNSS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 99 QdfynpaVTLYVDGVPqLSTNTIQALTD--------VQSVELLRGPQGTLYGKSAQGGIINIVTQQpdSTPRGYIEGGVS 170
Cdd:PRK10641 95 H------VLVLIDGVR-LNQAGISGSADlsqipislVQRIEYIRGPRSAVYGSDAIGGVVNIITTR--DKPGTTLSAGWG 165
|
.
gi 506355249 171 S 171
Cdd:PRK10641 166 S 166
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
22-643 |
3.10e-08 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 57.12 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 22 AQTSQQDESTLVVTASKQSSRSASAnnVSS--------------TVVSAPELSDAGVTASDKLPRVLPGLNI----ENSG 83
Cdd:PRK09840 34 AEGQTNADDTLVVEASTPSLYAPDQ--SADpkfsqpladttqtiTVISEQVIKDQGATNLTEALRNVPGVGTffagENGN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 84 NMLFSTISLRGVSSAQdfynpavTLYVDGVPQLSTNTiQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPdsTPRG 163
Cdd:PRK09840 112 TTTGDAIYMRGFDTSN-------SIYVDGIRDIGSIS-RDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQP--RNDS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 164 YIEGGVS--SRDSYRSKFNLSGPIQDGllyGSVTLLRQVDDgdminpatgSDDLGgtRASIGNVKLRLAPD-----DQPW 236
Cdd:PRK09840 182 GIDASASigSAWFRRGTLDVNQVIGDT---TAVRLNVMGEK---------THDAG--RDKVKNERYGVAPSvafglGTAN 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 237 EMGFAASRECTRATQDAYV------GWNDIKGRKLSISD----------GSPDPYMRRCTDSQTLSGKYT-TDDWVFNLI 299
Cdd:PRK09840 248 RLYLNYLHVTQNNTPDGGIptiglpGYSAPSAGRAALNHagkvdthnfyGTDSDYDDSTTDTATMRFEHDiNDNTTLRNT 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 300 SAW--QQQHYSRTFPSGSlIVNMPQRWNQDVQELRAATLGDARTV----------------------DMVFGLyrQNTRE 355
Cdd:PRK09840 328 TRWsrVKQDYLLTAIMGG-ASNITTPTPSDVNTWTWSRTANTKDVsnkiltnqtnltstfytgsighDVSTGV--EFTRE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 356 KLNSaYDMPTM-----------PYLSSTGYT--------TAETLAAYSDLTWHLTDRFDIGGGVRFSHDK----SSTQYH 412
Cdd:PRK09840 405 TQTN-YGVNPVtlpavnlyhpdSSIHPGGLTrnganangQTDTFAIYAFDTLQLTRDWELNGGIRLDNYHteydSATACG 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 413 GSMLGNPFGDQGK-------SNDDQVLGQL---SAG--YMLTDDWRVYTRVAQGYKPSGYN----IVPTAGLDAK--PFV 474
Cdd:PRK09840 484 GSGRGAITCPAGVakgspvtTVDTAKSGNLvnwKAGalYKLTENGNVYINYAVSQQPPGGSnfalAQSGSGNSANrtDFK 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 475 AEKSINYELGTRYETAEVTLQ--AATFYTHTKDmQLYSGPVGmqTLSNAGKADATGVELEAKWRFAPGWSwdingnVIRS 552
Cdd:PRK09840 564 PQKANTSEIGTKWQVLDKRLLltAALFRTDIEN-EVEQNDDG--TYSQYGKKRVEGYELSVAGNITPAWQ------VIAG 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 553 EFTNDSELYHGNRV--------PFVPRYG----------AGSSVNGviDTRYGALMPRLAVNLVG-PHYFDGdnqlrqgt 613
Cdd:PRK09840 635 YTQQKATVKNGKDVaqdgssslPYTPEHAftlwsqyqatDDLSVGG--GARYIGSMHRGSDGAVGtPAFTEG-------- 704
|
730 740 750
....*....|....*....|....*....|
gi 506355249 614 YATLDSSLGWQATERMNISVYVDNLFDRRY 643
Cdd:PRK09840 705 YWVADAKLGYRVNRNLDLQLNVYNLFDTDY 734
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
127-201 |
7.19e-08 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 55.68 E-value: 7.19e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506355249 127 VQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGPIQ--DGLLYGSVTLLRQVD 201
Cdd:PRK14049 157 LEGVSILRGPSSALYGASGAGGLFNLITKRPTEEPLREVQVQYGTNNRYQGQFDFSGPVNetDPVYYRLTGLLRDAD 233
|
|
| OMP_b-brl_3 |
pfam14905 |
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ... |
476-667 |
8.32e-04 |
|
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.
Pssm-ID: 434300 [Multi-domain] Cd Length: 407 Bit Score: 42.26 E-value: 8.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 476 EKSINYELGTRYETaevTLQAATFYTHTKDM------QLYSGPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDINGNV 549
Cdd:pfam14905 215 EYTNSFELGYTYKW---KLSLSLSYRYTNDViqqtfiTDDNDNVTYTTYENLGKSNSYGLELSASFNPTKWWSLNGNLNG 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 550 IRSEFTNDSELYHGNRVpfvprygagSSVNGVIDTRYgALMPRLAVNLVGPHYFDGDN-QLRQGTYATLDSSLGWQ-ATE 627
Cdd:pfam14905 292 YYNKYKIDGSLNSDFSN---------FGFNWNLNNTF-TLPKGWSLQLNGNYRSPRVTgQGKIKPFYSLDLGLSKSfLKK 361
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 506355249 628 RMNISVYVDNLFDRRyRTYGYMNGSSAVAQV----NMGRTVGIN 667
Cdd:pfam14905 362 KLTLSLNVNDIFNTR-KFRSTTNYDNGFIQSynnkWDSRSVRLS 404
|
|
| PRK10003 |
PRK10003 |
ferric-rhodotorulic acid outer membrane transporter; Provisional |
439-646 |
4.62e-03 |
|
ferric-rhodotorulic acid outer membrane transporter; Provisional
Pssm-ID: 236640 [Multi-domain] Cd Length: 729 Bit Score: 40.24 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 439 YMLTDDWRVYTRVAQGYKPSGYNIVPTAGLDakPFVAEksiNYELGTR--YETAEVTLQAATFYTHTKDMQLYSG-PVGM 515
Cdd:PRK10003 500 YDINDNWSTYASYTSIFQPQNDRDSSGKYLA--PITGN---NYELGLKsdWMNSRLTTTLAIFRIEQDNVAQSTGtPIPG 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506355249 516 QTLSNAGKA-DAT---GVELEAKWRFAPGWSW----------DINGNVIRSEFTNDS-ELYHGNRVPFVPRYGAGSSVNg 580
Cdd:PRK10003 575 SNGETAYKAvDGTvskGVEFELNGAITDNWQLtfgatryiaeDNEGNAVNPNLPRTTvKLFTRYRLPVMPELTVGGGVN- 653
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 506355249 581 vidtrygaLMPRLAVNLVGPHyfdGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTY 646
Cdd:PRK10003 654 --------WQNRVYTDTVTPY---GTFRAEQGSYALVDLFTRYQVTKNFSVQGNVNNLFDKTYDTN 708
|
|
| |
