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Conserved domains on  [gi|506358951|ref|WP_015878670|]
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DNA sulfur modification protein DndE [Tolumonas auensis]

Protein Classification

DndE family protein( domain architecture ID 10556133)

DndE family protein similar to DNA sulfur modification protein DndE, which is a putative carboxylase homologous to NCAIR synthetase and it is encoded by an operon that is associated with a sulphur-based modification to DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DndE pfam08870
DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a ...
 6-108 3.39e-39

DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a putative carboxylase homologous to NCAIR synthetase. It is encoded by an operon that is associated with a sulphur-based modification to DNA.


:

Pssm-ID: 430276  Cd Length: 110  Bit Score: 126.57  E-value: 3.39e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506358951    6 MNLSLSTEEQLKKLKSYTGITP-NISARIAFFRSIESDFRYSGQEAKLDGTLVLDKFTWLGETSDITELMLKLYYPN--- 81
Cdd:pfam08870   1 IRLSKTAKEQLIKLKRRTGITPwNILCRWAFCRSLEEGSPPSPVEIKDDSGLEMNWKTFLGEYGDIFLALLKQRCQHdgy 80

                          90       100
                  ....*....|....*....|....*...
gi 506358951   82 -LDGKKYQQAWAAHVEYGISSLRNHKSL 108
Cdd:pfam08870  81 pTDDETLAKQFRLHLHRGIGYLAGDKNL 108
 
Name Accession Description Interval E-value
DndE pfam08870
DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a ...
 6-108 3.39e-39

DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a putative carboxylase homologous to NCAIR synthetase. It is encoded by an operon that is associated with a sulphur-based modification to DNA.


Pssm-ID: 430276  Cd Length: 110  Bit Score: 126.57  E-value: 3.39e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506358951    6 MNLSLSTEEQLKKLKSYTGITP-NISARIAFFRSIESDFRYSGQEAKLDGTLVLDKFTWLGETSDITELMLKLYYPN--- 81
Cdd:pfam08870   1 IRLSKTAKEQLIKLKRRTGITPwNILCRWAFCRSLEEGSPPSPVEIKDDSGLEMNWKTFLGEYGDIFLALLKQRCQHdgy 80

                          90       100
                  ....*....|....*....|....*...
gi 506358951   82 -LDGKKYQQAWAAHVEYGISSLRNHKSL 108
Cdd:pfam08870  81 pTDDETLAKQFRLHLHRGIGYLAGDKNL 108
DNA_S_dndE TIGR03184
DNA sulfur modification protein DndE; This model describes the DndE protein encoded by an ...
 6-104 8.57e-28

DNA sulfur modification protein DndE; This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases. [DNA metabolism, Restriction/modification]


Pssm-ID: 274474  Cd Length: 105  Bit Score: 97.80  E-value: 8.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506358951    6 MNLSLSTEEQLKKLKSYTGITP-NISARIAFFRSIESDFRYSGQEAKLDGTLVLDKFTWLGETSDITELMLKLY----YP 80
Cdd:TIGR03184   1 IRLSQTAKDQLRRLKRRTGLTPwNILCRWAFCLSLEEGSTPGVADIKLDGGLEIDWYTFAGEYGDIYLALLKQRcvadGP 80

                          90       100
                  ....*....|....*....|....
gi 506358951   81 NLDGKKYQQAWAAHVEYGISSLRN 104
Cdd:TIGR03184  81 ELDDESLAKALNLHVHRGIGYLSG 104
 
Name Accession Description Interval E-value
DndE pfam08870
DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a ...
 6-108 3.39e-39

DNA sulphur modification protein DndE; DndE is a small protein of 126 residues. It is a putative carboxylase homologous to NCAIR synthetase. It is encoded by an operon that is associated with a sulphur-based modification to DNA.


Pssm-ID: 430276  Cd Length: 110  Bit Score: 126.57  E-value: 3.39e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506358951    6 MNLSLSTEEQLKKLKSYTGITP-NISARIAFFRSIESDFRYSGQEAKLDGTLVLDKFTWLGETSDITELMLKLYYPN--- 81
Cdd:pfam08870   1 IRLSKTAKEQLIKLKRRTGITPwNILCRWAFCRSLEEGSPPSPVEIKDDSGLEMNWKTFLGEYGDIFLALLKQRCQHdgy 80

                          90       100
                  ....*....|....*....|....*...
gi 506358951   82 -LDGKKYQQAWAAHVEYGISSLRNHKSL 108
Cdd:pfam08870  81 pTDDETLAKQFRLHLHRGIGYLAGDKNL 108
DNA_S_dndE TIGR03184
DNA sulfur modification protein DndE; This model describes the DndE protein encoded by an ...
 6-104 8.57e-28

DNA sulfur modification protein DndE; This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases. [DNA metabolism, Restriction/modification]


Pssm-ID: 274474  Cd Length: 105  Bit Score: 97.80  E-value: 8.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506358951    6 MNLSLSTEEQLKKLKSYTGITP-NISARIAFFRSIESDFRYSGQEAKLDGTLVLDKFTWLGETSDITELMLKLY----YP 80
Cdd:TIGR03184   1 IRLSQTAKDQLRRLKRRTGLTPwNILCRWAFCLSLEEGSTPGVADIKLDGGLEIDWYTFAGEYGDIYLALLKQRcvadGP 80

                          90       100
                  ....*....|....*....|....
gi 506358951   81 NLDGKKYQQAWAAHVEYGISSLRN 104
Cdd:TIGR03184  81 ELDDESLAKALNLHVHRGIGYLSG 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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