|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 764.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 1 MFENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQA 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 81 ELEKAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKeRHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 161 PTETSQKPVDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 241 PLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRSVDQEKAEKMA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 321 AKFKKGdDFTLDDFREQLVEMKKMGGMMSMLDKLPGAKNLPDHVKNQVDDKMFIKMEAIINSMTLKERANPDIIKGSRRR 400
Cdd:COG0541 320 KKLKKG-KFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 506420093 401 RIALGSGTQVQDVNKLLKQFDEMQR 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 591.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 2 FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 82 LEKAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 162 TETSQKPVDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 242 LTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRSVDQEKAEKMAA 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 322 KFKKGdDFTLDDFREQLVEMKKMGGMMSMLDKLPGAKNLPDHVKN-QVDDKMFIKMEAIINSMTLKERANPDIIKGSRRR 400
Cdd:TIGR00959 321 KMKKG-QFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDaDLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 506420093 401 RIALGSGTQVQDVNKLLKQFDEMQRMMKK 429
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-435 |
1.06e-166 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 476.62 E-value: 1.06e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 5 LSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAELEK 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 85 AMGEANEGLNLATQPpAVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTET 164
Cdd:PRK00771 81 LLGEETEPLVLPLKP-QTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 165 SQKPVDIAEAALKHAKLNffDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 245 VILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRSVDQEKAEKMAAKFK 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 325 KGdDFTLDDFREQLVEMKKMGGMMSMLDKLPGAK-NLPDHVKNQVDDKMfIKMEAIINSMTLKERANPDIIKGSRRRRIA 403
Cdd:PRK00771 317 KG-KFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410 420 430
....*....|....*....|....*....|..
gi 506420093 404 LGSGTQVQDVNKLLKQFDEMQRMMKKMRKGGM 435
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLKKGKG 426
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
2.51e-116 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 338.80 E-value: 2.51e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 101 AVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 506420093 261 SIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
5.37e-110 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 322.82 E-value: 5.37e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 100 PAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 180 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 506420093 260 LSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
4.54e-98 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 292.52 E-value: 4.54e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERHKKkVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 182 NFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 506420093 262 IRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
101-294 |
7.34e-91 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 273.87 E-value: 7.34e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 101 AVILMAGLQGAGKTTSVGKLAKFLKERHKKkVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKK-VLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAAL 260
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 506420093 261 SIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
7.24e-89 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 273.05 E-value: 7.24e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 1 MFENLSDRLSKTLKNIT--------GKGRLTEDnikdTLREVRIALLEADVALPVVREFINKVKERAIGEEVnkslTPGQ 72
Cdd:COG0552 1 FFERLKEGLSKTRSGLGeklkslfsGKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKKL----KDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 73 EFLKIVQAELEKAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLA 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAE-GKSVLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 153 EALKVDFFPTETSQKPVDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTG 226
Cdd:COG0552 152 ERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTG 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 227 QDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILG 296
Cdd:COG0552 232 QNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-296 |
7.91e-77 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 242.31 E-value: 7.91e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 1 MFENLSDRLSKTLKNITGK--GRLTEDNI-KDTLREVRIALLEADVALPVVREFINKVKERAIGEEVnkslTPGQEFLKI 77
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGinGLFAKKKIdEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNL----KDPEELKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 78 VQAELEKAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKERHKKkVLVVSADVYRPAAIKQLQTLAEALKV 157
Cdd:PRK10416 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 158 DFFPTETSQKPVDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAAN 231
Cdd:PRK10416 171 PVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALS 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 506420093 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILG 296
Cdd:PRK10416 251 QAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-426 |
3.52e-74 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 239.35 E-value: 3.52e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 4 NLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAELE 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 84 KAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTE 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRR-GFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 164 TSQKPVDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 244 GVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRSVDQEKAEKMAAKF 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 324 KKGdDFTLDDFREQLVEMKKMGGMMSMLDKLPG-AKNLPDHVKNQVDDKMFIKMEAIINSMTLKERANPDII---KGSRR 399
Cdd:TIGR01425 323 KEG-TFTLRDWYEQFQNLLKMGPLGNIMSMIPGlSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTAKTmlkDPSRI 401
|
410 420
....*....|....*....|....*..
gi 506420093 400 RRIALGSGTQVQDVNKLLKQFDEMQRM 426
Cdd:TIGR01425 402 RRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
25-295 |
5.15e-70 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 223.67 E-value: 5.15e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 25 DNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVnkslTPGQEFLKIVQAELEKAMGEAN-----EGLNLATQP 99
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAEKLKEILKEYLKEILKEDLlkntdLELIVEENK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 100 PAVILMAGLQGAGKTTSVGKLAKFLKERHKKkVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHA 179
Cdd:TIGR00064 77 PNVILFVGVNGVGKTTTIAKLANKLKKQGKS-VLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 180 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVL------NPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGD 253
Cdd:TIGR00064 156 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIkkvdkdAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGT 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 506420093 254 ARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRIL 295
Cdd:TIGR00064 236 AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
4.12e-69 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 223.31 E-value: 4.12e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 21 RLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAELEKAMGEAN----EGLNLA 96
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDlfdlIEEIKS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 97 TQPPAVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAAL 176
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 177 KHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARG 256
Cdd:PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKG 295
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 506420093 257 GAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILG 296
Cdd:PRK14974 296 GAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
4.63e-67 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 212.82 E-value: 4.63e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAKL 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKK-GYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 182 NFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 506420093 262 IRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-294 |
1.23e-65 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 209.35 E-value: 1.23e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 101 AVILMAGLQGAGKTTSVGKLAKFLKERHKKkVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKK-VVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDA 254
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 506420093 255 RGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
9-296 |
1.50e-40 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 148.47 E-value: 1.50e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 9 LSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVnksltpgqefLKIVQAELEKAMGE 88
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEA----------WRALLEALARRLPV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 89 ANEGLnlaTQPPAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQkp 168
Cdd:COG1419 156 AEDPL---LDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPE-- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 169 vDIAEAALKHAKlnfFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDA-MTGQDAANTAKAFNEaLPLTGVIL 247
Cdd:COG1419 231 -ELKEALERLRD---KDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLDGLIL 305
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 506420093 248 TKVDGDARGGAALSIRQITGKPIKFLGVGEK-TDALEPFHPDRIASRILG 296
Cdd:COG1419 306 TKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
9.78e-37 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 133.89 E-value: 9.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKErHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAKL 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLS-NGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 182 NFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEAL----------PLTGVILTKVD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 506420093 252 G-DARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIAS 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
2.11e-34 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 126.90 E-value: 2.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVdffptetsqkPVDIAE--AALKHA 179
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEdpEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 180 KLNF--FDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMT-GQDAANTAKAFnEALPLTGVILTKVDGDARG 256
Cdd:cd17873 72 LERLsdRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 506420093 257 GAALSIRQITGKPIKFLGVGEKT-DALEPFHPDRIASRI 294
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
329-425 |
2.06e-32 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 118.65 E-value: 2.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 329 FTLDDFREQLVEMKKMGGMMSMLDKLPGAKNLPDHVKnqvDDKMFIKMEAIINSMTLKERANPDIIKGSRRRRIALGSGT 408
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDID---SEKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGT 78
|
90
....*....|....*..
gi 506420093 409 QVQDVNKLLKQFDEMQR 425
Cdd:pfam02978 79 SVQEVNRLLKQFKQMKK 95
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
102-296 |
9.71e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 99.97 E-value: 9.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLA-KFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVdffPTETSQKPVDIAEaALKhaK 180
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLAaRYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI---PVEVVYDPKELAK-ALE--Q 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQ-IHSVLNPIETlFTVDAMTGQ--DAANTAKAFNEaLPLTGVILTKVDGDARGG 257
Cdd:PRK05703 297 LRDCDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDV-YLVLSATTKyeDLKDIYKHFSR-LPLDGLIFTKLDETSSLG 374
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 506420093 258 AALSIRQITGKPIKFLGVG-EKTDALEPFHPDRIASRILG 296
Cdd:PRK05703 375 SILSLLIESGLPISYLTNGqRVPDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
1.39e-20 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 85.21 E-value: 1.39e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 506420093 5 LSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGEEVnksLTPGQEFLKIVQAEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEKK---LKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
2.00e-19 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 82.21 E-value: 2.00e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 506420093 9 LSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIGeEVNKSLTPGQEFLKIVQAELEKAM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
1.30e-16 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 81.55 E-value: 1.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKpvdIAEAALKHAKl 181
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK---FKETLARDGS- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 182 nffDVLIVDTAGRLHVDGEMMEEIQQIHSVL---NPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGA 258
Cdd:PRK12724 301 ---ELILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377
|
170
....*....|....*....
gi 506420093 259 ALSIRQITGKPIKFLGVGE 277
Cdd:PRK12724 378 FLELADTYSKSFTYLSVGQ 396
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
38-193 |
7.68e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 77.76 E-value: 7.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 38 LLEADVALPVVREFINKVKERaigeevnkslTPGQEFLKIVQAELEKAMGEANEGLNLATQPPAVILMaGLQGAGKTTSV 117
Cdd:TIGR03499 143 LLEAGVSEELARELLEKLPED----------ADAEDAWRWLREALEGMLPVKPEEDPILEQGGVIALV-GPTGVGKTTTL 211
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506420093 118 GKLAKFLKERH-KKKVLVVSADVYRPAAIKQLQTLAEALKVDFfptETSQKPVDIAEAAlkhAKLNFFDVLIVDTAG 193
Cdd:TIGR03499 212 AKLAARFALEHgKKKVALITTDTYRIGAVEQLKTYAEILGIPV---KVARDPKELREAL---DRLRDKDLILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
1.68e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 72.08 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLA-KFLKErhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFpteTSQKPVDIAEAALKHAK 180
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGwQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTY 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDA-MTGQDAANTAKAFNEaLPLTGVILTKVDGDARGGAA 259
Cdd:PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDL 361
|
170
....*....|....*...
gi 506420093 260 LSIRQITGKPIKFLGVGE 277
Cdd:PRK12726 362 YTVMQETNLPVLYMTDGQ 379
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-313 |
3.08e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 65.40 E-value: 3.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERHK-KKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEaALKHAK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLRDYK 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 181 LnffdVLIvDTAGRLHVDGEMMEEIQQIHSVlNPIETLFTVDAMTG-QDAANTAKAFNEALPlTGVILTKVDGDARGGAA 259
Cdd:PRK12727 431 L----VLI-DTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHfSDLDEVVRRFAHAKP-QGVVLTKLDETGRFGSA 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 506420093 260 LSIRQITGKPIKFLGVGEktDALEPFHPDRIASRILGMgdvlsliEDLQRSVDQ 313
Cdd:PRK12727 504 LSVVVDHQMPITWVTDGQ--RVPDDLHRANAASLVLRL-------EDLRRAADK 548
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
36-277 |
5.98e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 60.85 E-value: 5.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 36 IALLEADvalPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAELEKAMGEANeglnLATQPPAVILMAGLQGAGKTT 115
Cdd:PRK11889 184 IRMLEQN---DVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTEN----VFEKEVQTIALIGPTGVGKTT 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 116 SVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETsqkpvdiaEAALKHAkLNFF------DVLIV 189
Cdd:PRK11889 257 TLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD--------EAAMTRA-LTYFkeearvDYILI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 190 DTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDA-MTGQDAANTAKAFNEaLPLTGVILTKVDGDARGGAALSIRQITGK 268
Cdd:PRK11889 327 DTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSA 405
|
....*....
gi 506420093 269 PIKFLGVGE 277
Cdd:PRK11889 406 PIVLMTDGQ 414
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-278 |
3.82e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 58.19 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 101 AVILMAGLQGAGKTTSVGKLAKFLKERH-KKKVLVVSADVYRPAAIKQLQTLAEALKVdffPTETSQkpvDIAEAALKHA 179
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFgASKVALLTTDSYRIGGHEQLRIFGKILGV---PVHAVK---DGGDLQLALA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 180 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAAN-TAKAFNE-------ALP-LTGVILTKV 250
Cdd:PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSaagqpkaALPdLAGCILTKL 291
|
170 180
....*....|....*....|....*...
gi 506420093 251 DGDARGGAALSIRQITGKPIKFLGVGEK 278
Cdd:PRK14722 292 DEASNLGGVLDTVIRYKLPVHYVSTGQK 319
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-212 |
1.74e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 99 PPAVILMAGLQGAGKTTSVGKLAKFLKERHkKKVLVVSADVYRPAAIKQLqtlaeaLKVDFFPTETSQKPVDIAEAALKH 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQL------LLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110
....*....|....*....|....*....|....
gi 506420093 179 AKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVL 212
Cdd:smart00382 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
94-277 |
1.13e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 52.83 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 94 NLATQPPAVILMAGLQGAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETsqkpvdiaE 173
Cdd:PRK06731 69 NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD--------E 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 174 AALKHAkLNFF------DVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDA-MTGQDAANTAKAFNEaLPLTGVI 246
Cdd:PRK06731 140 AAMTRA-LTYFkeearvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIV 217
|
170 180 190
....*....|....*....|....*....|.
gi 506420093 247 LTKVDGDARGGAALSIRQITGKPIKFLGVGE 277
Cdd:PRK06731 218 FTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
102-278 |
1.23e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 50.95 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 102 VILMAGLQGAGKTTSVGKLAKFLKERH-KKKVLVVSADVYRPAAIKQLQTLAEALKVdffPTETSQKPVDI--AEAALKH 178
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREgADQLALLTTDSFRIGALEQLRIYGRILGV---PVHAVKDAADLrfALAALGD 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 179 AKLnffdvLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAAN-TAKAF-NEALP-LTGVILTKVDGDAR 255
Cdd:PRK14723 264 KHL-----VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYrHGAGEdVDGCIITKLDEATH 338
|
170 180
....*....|....*....|....*
gi 506420093 256 GGAAL--SIRQITgkPIKFLGVGEK 278
Cdd:PRK14723 339 LGPALdtVIRHRL--PVHYVSTGQK 361
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
93-264 |
2.44e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 49.56 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 93 LNLAT-------QPPAVILMAGLQGAGKTTSVGKLAKFLKERH-KKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTEt 164
Cdd:PRK14721 177 LNLRTiggdeiiEQGGVYALIGPTGVGKTTTTAKLAARAVIRHgADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 165 sqkpvDIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTG 244
Cdd:PRK14721 256 -----DIADLQLMLHELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHG 330
|
170 180
....*....|....*....|..
gi 506420093 245 VILTKVDGDARGGAALS--IRQ 264
Cdd:PRK14721 331 CIITKVDEAASLGIALDavIRR 352
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
110-275 |
2.45e-05 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 45.41 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 110 GAGKTTSVGKLAKFLKERhKKKVLVVSADVYRPAA---------IKQLQTLAEALK------------------VDFFP- 161
Cdd:pfam01656 9 GVGKTTLAANLARALARR-GLRVLLIDLDPQSNNSsveglegdiAPALQALAEGLKgrvnldpillkeksdeggLDLIPg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 162 ---------TETSQKPVDIAEAALKHAKLNFfDVLIVDTAGRLHVDgeMMEEIQQIHSVLNPI--ETLFTVDAM-TGQDA 229
Cdd:pfam01656 88 nidlekfekELLGPRKEERLREALEALKEDY-DYVIIDGAPGLGEL--LRNALIAADYVIIPLepEVILVEDAKrLGGVI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 506420093 230 ANTAKAFNEA-LPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGV 275
Cdd:pfam01656 165 AALVGGYALLgLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLGV 211
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-262 |
2.59e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 46.43 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 100 PAVILMAGLQGAGKTTSVGKLAKFL---KERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQkpvDIAEAAL 176
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYginSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFK---DLKEEIT 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 177 KHAKlnfFDVLIVDTAGRLHVDGEMMEEIQQIHSVL-NPIETLFTVDAMTgqDAANTAKAFNEALPL--TGVILTKVDGD 253
Cdd:PRK12723 251 QSKD---FDLVLVDTIGKSPKDFMKLAEMKELLNACgRDAEFHLAVSSTT--KTSDVKEIFHQFSPFsyKTVIFTKLDET 325
|
....*....
gi 506420093 254 ARGGAALSI 262
Cdd:PRK12723 326 TCVGNLISL 334
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
107-221 |
6.68e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.63 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 107 GLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIkqLQTLAEALKVDFFPTETSQKPVDIAEAALKHAKLNffDV 186
Cdd:pfam13401 12 GESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPKDL--LRALLRALGLPLSGRLSKEELLAALQQLLLALAVA--VV 87
|
90 100 110
....*....|....*....|....*....|....*
gi 506420093 187 LIVDTAGRLHvdGEMMEEIQQIHsvlNPIETLFTV 221
Cdd:pfam13401 88 LIIDEAQHLS--LEALEELRDLL---NLSSKLLQL 117
|
|
| COG4639 |
COG4639 |
Predicted kinase [General function prediction only]; |
99-179 |
2.77e-03 |
|
Predicted kinase [General function prediction only];
Pssm-ID: 443677 [Multi-domain] Cd Length: 145 Bit Score: 38.27 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 99 PPAVILMAGLQGAGKTTsvgkLAKflkeRHKKKVLVVSADVYRpaaikqlqtlaEALKVDffptETSQKPVDIAEAALKH 178
Cdd:COG4639 1 MLSLVVLIGLPGSGKST----FAR----RLFAPTEVVSSDDIR-----------ALLGGD----ENDQSAWGDVFQLAHE 57
|
.
gi 506420093 179 A 179
Cdd:COG4639 58 I 58
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
104-260 |
4.47e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.18 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506420093 104 LMaGLQGAGKTTSVGKLAKFLKERH-KKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKpVDIAEAALKHAKLn 182
Cdd:PRK06995 261 LM-GPTGVGKTTTTAKLAARCVMRHgASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD-LRLALSELRNKHI- 337
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506420093 183 ffdVLIvDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAAN-TAKAFNEAlPLTGVILTKVDGDARGGAAL 260
Cdd:PRK06995 338 ---VLI-DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNeVVQAYRGP-GLAGCILTKLDEAASLGGAL 411
|
|
| PLN02796 |
PLN02796 |
D-glycerate 3-kinase |
78-154 |
6.06e-03 |
|
D-glycerate 3-kinase
Pssm-ID: 215427 Cd Length: 347 Bit Score: 38.57 E-value: 6.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506420093 78 VQAELEKAMGEANEGlnlATQPPAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAikQLQTLAEA 154
Cdd:PLN02796 81 CEDQLEAHRSKFKDG---DEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAA--DQAKLAEA 152
|
|
| |
