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Conserved domains on  [gi|506438997|ref|WP_015958714|]
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MULTISPECIES: capsule assembly Wzi family protein [Klebsiella]

Protein Classification

capsule assembly Wzi family protein( domain architecture ID 10624006)

capsule assembly Wzi family protein similar to Escherichia coli Wzi, a carbohydrate binding beta-barrel that plays a role in group 1 capsule assembly by assisting in the formation of the bacterial capsule via direct interaction with capsular polysaccharides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Caps_assemb_Wzi pfam14052
Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated ...
85-468 4.93e-133

Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organization of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.


:

Pssm-ID: 433677  Cd Length: 391  Bit Score: 389.74  E-value: 4.93e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997   85 LSALKADFRVTGYTSTDQPGTPQGFGQTQPADSSLGLAFN---NSGEWWDVHLQGNVEGGERIsNGSRFNANGAYGAVKF 161
Cdd:pfam14052   1 RSANRGGTPVLRDGATDTPLLENDFGRVYREGFNLYVGFEaeaYLGERFAGYVRGEYQYSPQG-DGSTFRLDDAYVAVGL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  162 WNQWLSFGQIPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEqaAPETWWLRWVGPWQYQISASQMNQYTAVPHAK-IIGGR 240
Cdd:pfam14052  80 GNWELEAGKDSQWWGPGYDGSLILSNNARPMPMLRLSNPE--PFETPWLSWLGPWKYTFFASRLEGHRAVPDAPwLHGER 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  241 FTFSPFQSLELGASRIMQWGGEGRPESFSSFWDGFTGHD-----NTGTDNEPGNQLAGFDFKFKLEPtLGWPVSFYGQMV 315
Cdd:pfam14052 158 LSFKPTPNLELGFSRTTQFGGEGQPPSFGDFLKSLFGGGdddsaDVGDDADPGNQLAGFDFRYRLPW-LRNPVSLYGESS 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  316 GEDESG-YLPSANMFLGGVEGHHGWGKDAVNWYVEAHDT---RTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLI 391
Cdd:pfam14052 237 GEDESGpFWPIRASYLAGIYLPHLTGLGKLDLRVEYADTdvpGDETTGGNFYYEHGTYKDGYTYKGMPLGSTIGGDAKDF 316
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506438997  392 AGKVELITEDNQRWSTRLVYAKVNPENQSinKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGAS 468
Cdd:pfam14052 317 QLRVTHWFSPRNRLSLEYRYAKLNKDGRW--GPFPLGEDLLALELSWRKPLYGDLSLSAGLGYERVKNPNLDDGVDR 391
 
Name Accession Description Interval E-value
Caps_assemb_Wzi pfam14052
Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated ...
85-468 4.93e-133

Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organization of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.


Pssm-ID: 433677  Cd Length: 391  Bit Score: 389.74  E-value: 4.93e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997   85 LSALKADFRVTGYTSTDQPGTPQGFGQTQPADSSLGLAFN---NSGEWWDVHLQGNVEGGERIsNGSRFNANGAYGAVKF 161
Cdd:pfam14052   1 RSANRGGTPVLRDGATDTPLLENDFGRVYREGFNLYVGFEaeaYLGERFAGYVRGEYQYSPQG-DGSTFRLDDAYVAVGL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  162 WNQWLSFGQIPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEqaAPETWWLRWVGPWQYQISASQMNQYTAVPHAK-IIGGR 240
Cdd:pfam14052  80 GNWELEAGKDSQWWGPGYDGSLILSNNARPMPMLRLSNPE--PFETPWLSWLGPWKYTFFASRLEGHRAVPDAPwLHGER 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  241 FTFSPFQSLELGASRIMQWGGEGRPESFSSFWDGFTGHD-----NTGTDNEPGNQLAGFDFKFKLEPtLGWPVSFYGQMV 315
Cdd:pfam14052 158 LSFKPTPNLELGFSRTTQFGGEGQPPSFGDFLKSLFGGGdddsaDVGDDADPGNQLAGFDFRYRLPW-LRNPVSLYGESS 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  316 GEDESG-YLPSANMFLGGVEGHHGWGKDAVNWYVEAHDT---RTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLI 391
Cdd:pfam14052 237 GEDESGpFWPIRASYLAGIYLPHLTGLGKLDLRVEYADTdvpGDETTGGNFYYEHGTYKDGYTYKGMPLGSTIGGDAKDF 316
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506438997  392 AGKVELITEDNQRWSTRLVYAKVNPENQSinKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGAS 468
Cdd:pfam14052 317 QLRVTHWFSPRNRLSLEYRYAKLNKDGRW--GPFPLGEDLLALELSWRKPLYGDLSLSAGLGYERVKNPNLDDGVDR 391
 
Name Accession Description Interval E-value
Caps_assemb_Wzi pfam14052
Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated ...
85-468 4.93e-133

Capsule assembly protein Wzi; Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organization of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.


Pssm-ID: 433677  Cd Length: 391  Bit Score: 389.74  E-value: 4.93e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997   85 LSALKADFRVTGYTSTDQPGTPQGFGQTQPADSSLGLAFN---NSGEWWDVHLQGNVEGGERIsNGSRFNANGAYGAVKF 161
Cdd:pfam14052   1 RSANRGGTPVLRDGATDTPLLENDFGRVYREGFNLYVGFEaeaYLGERFAGYVRGEYQYSPQG-DGSTFRLDDAYVAVGL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  162 WNQWLSFGQIPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEqaAPETWWLRWVGPWQYQISASQMNQYTAVPHAK-IIGGR 240
Cdd:pfam14052  80 GNWELEAGKDSQWWGPGYDGSLILSNNARPMPMLRLSNPE--PFETPWLSWLGPWKYTFFASRLEGHRAVPDAPwLHGER 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  241 FTFSPFQSLELGASRIMQWGGEGRPESFSSFWDGFTGHD-----NTGTDNEPGNQLAGFDFKFKLEPtLGWPVSFYGQMV 315
Cdd:pfam14052 158 LSFKPTPNLELGFSRTTQFGGEGQPPSFGDFLKSLFGGGdddsaDVGDDADPGNQLAGFDFRYRLPW-LRNPVSLYGESS 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506438997  316 GEDESG-YLPSANMFLGGVEGHHGWGKDAVNWYVEAHDT---RTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLI 391
Cdd:pfam14052 237 GEDESGpFWPIRASYLAGIYLPHLTGLGKLDLRVEYADTdvpGDETTGGNFYYEHGTYKDGYTYKGMPLGSTIGGDAKDF 316
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506438997  392 AGKVELITEDNQRWSTRLVYAKVNPENQSinKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGAS 468
Cdd:pfam14052 317 QLRVTHWFSPRNRLSLEYRYAKLNKDGRW--GPFPLGEDLLALELSWRKPLYGDLSLSAGLGYERVKNPNLDDGVDR 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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