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Conserved domains on  [gi|506592087|ref|WP_016057761|]
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DUF2681 domain-containing protein [Glaesserella parasuis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2681 super family cl12467
Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins ...
 3-87 5.55e-24

Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins in this family are typically between 81 and 117 amino acids in length.


The actual alignment was detected with superfamily member pfam10883:

Pssm-ID: 402472  Cd Length: 87  Bit Score: 87.60  E-value: 5.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506592087    3 TVKIVTLVLFIASCALF--WLWLKVEKAEERNRKLQAENQQQASKIQAQKTEIKNAQIKQKNHDDVKRSNASVVDQQLHA 80
Cdd:pfam10883   1 MWQMALLVGFAGAVVLYygYLYWQLRKSRKKNAKLQAEKQQLKAEKAVAEAEVKNAKVKQKNEENTRRISRDSVDEQLHQ 80


                  ....*..
gi 506592087   81 HGYFRDD 87
Cdd:pfam10883  81 HGYFRDD 87
 
Name Accession Description Interval E-value
DUF2681 pfam10883
Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins ...
 3-87 5.55e-24

Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins in this family are typically between 81 and 117 amino acids in length.


Pssm-ID: 402472  Cd Length: 87  Bit Score: 87.60  E-value: 5.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506592087    3 TVKIVTLVLFIASCALF--WLWLKVEKAEERNRKLQAENQQQASKIQAQKTEIKNAQIKQKNHDDVKRSNASVVDQQLHA 80
Cdd:pfam10883   1 MWQMALLVGFAGAVVLYygYLYWQLRKSRKKNAKLQAEKQQLKAEKAVAEAEVKNAKVKQKNEENTRRISRDSVDEQLHQ 80


                  ....*..
gi 506592087   81 HGYFRDD 87
Cdd:pfam10883  81 HGYFRDD 87
PilN COG3166
Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];
1-61 1.68e-03

Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];


Pssm-ID: 442399 [Multi-domain]  Cd Length: 185  Bit Score: 36.10  E-value: 1.68e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506592087   1 MMTVKIVTLVLFIASCALFWLWLKVEKAEERNRKLQAENQQQASKIQA-QKTEIKNAQIKQK 61
Cdd:COG3166   23 ALLVLALLLALAVLFLVYLYLQGQIAQQQARNAALQQEIAKLDKQIAEiKELKKQKAELLAR 84
 
Name Accession Description Interval E-value
DUF2681 pfam10883
Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins ...
 3-87 5.55e-24

Protein of unknown function (DUF2681); This family of proteins is found in bacteria. Proteins in this family are typically between 81 and 117 amino acids in length.


Pssm-ID: 402472  Cd Length: 87  Bit Score: 87.60  E-value: 5.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506592087    3 TVKIVTLVLFIASCALF--WLWLKVEKAEERNRKLQAENQQQASKIQAQKTEIKNAQIKQKNHDDVKRSNASVVDQQLHA 80
Cdd:pfam10883   1 MWQMALLVGFAGAVVLYygYLYWQLRKSRKKNAKLQAEKQQLKAEKAVAEAEVKNAKVKQKNEENTRRISRDSVDEQLHQ 80


                  ....*..
gi 506592087   81 HGYFRDD 87
Cdd:pfam10883  81 HGYFRDD 87
PilN COG3166
Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];
1-61 1.68e-03

Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];


Pssm-ID: 442399 [Multi-domain]  Cd Length: 185  Bit Score: 36.10  E-value: 1.68e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506592087   1 MMTVKIVTLVLFIASCALFWLWLKVEKAEERNRKLQAENQQQASKIQA-QKTEIKNAQIKQK 61
Cdd:COG3166   23 ALLVLALLLALAVLFLVYLYLQGQIAQQQARNAALQQEIAKLDKQIAEiKELKKQKAELLAR 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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