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Conserved domains on  [gi|506990283|ref|WP_016080877|]
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MULTISPECIES: pentapeptide repeat-containing protein [Bacillus cereus group]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 8.71e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 78.83  E-value: 8.71e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357   95 SGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADL 154
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 8.71e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 78.83  E-value: 8.71e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357   95 SGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADL 154
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 202-241 6.17e-12

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 58.89  E-value: 6.17e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 506990283  202 ANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTN 241
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
164-259 3.29e-08

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 53.39  E-value: 3.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 164 LETSELVWKEMNTARKKRIIHRGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSI 243
Cdd:PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI 235

                         90       100
                 ....*....|....*....|
gi 506990283 244 F----LTQVQVNAARGDKYT 259
Cdd:PRK15197 236 LfgsdLTDTKLNGAKLDKIA 255
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 8.71e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 78.83  E-value: 8.71e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357   95 SGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADL 154
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 1.26e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 75.36  E-value: 1.26e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357  105 RGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANL 164
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 2.26e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 74.98  E-value: 2.26e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357   90 SGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 2.43e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 74.59  E-value: 2.43e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357  100 SGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANL 159
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-244 7.46e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 73.44  E-value: 7.46e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506990283 185 RGADLM---GANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:COG1357   82 SGANLAnlsGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANL 144
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-241 9.24e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 73.05  E-value: 9.24e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTN 241
Cdd:COG1357  110 SGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSG 166
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
185-251 1.78e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 66.89  E-value: 1.78e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506990283 185 RGADL----MGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIFLTQVQVN 251
Cdd:COG1357   23 SGANLsgalSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLANLSGAN 93
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
177-244 5.42e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 65.73  E-value: 5.42e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506990283 177 ARKKRIIHRGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLI---GADLRDADIRGTDFTNSIF 244
Cdd:COG1357   39 ANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLAnlsGANLSGANLSGANLRGANL 109
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 202-241 6.17e-12

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 58.89  E-value: 6.17e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 506990283  202 ANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTN 241
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 198-236 3.52e-11

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 56.96  E-value: 3.52e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 506990283  198 NLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRG 236
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 187-224 8.58e-10

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 53.11  E-value: 8.58e-10
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 506990283  187 ADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADL 224
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 185-221 2.62e-08

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 48.88  E-value: 2.62e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 506990283  185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRG 221
Cdd:pfam00805   4 SGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
164-259 3.29e-08

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 53.39  E-value: 3.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 164 LETSELVWKEMNTARKKRIIHRGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSI 243
Cdd:PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI 235

                         90       100
                 ....*....|....*....|
gi 506990283 244 F----LTQVQVNAARGDKYT 259
Cdd:PRK15197 236 LfgsdLTDTKLNGAKLDKIA 255
PRK15196 PRK15196
type III secretion system effector PipB2;
186-254 1.66e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 51.55  E-value: 1.66e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506990283 186 GADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIfLTQVQVNAAR 254
Cdd:PRK15196 266 RADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCT-LTHLRTEDAT 333
PRK15196 PRK15196
type III secretion system effector PipB2;
185-243 2.67e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 50.78  E-value: 2.67e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506990283 185 RGADLMGANLKKKNL-----QGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSI 243
Cdd:PRK15196 155 KGAVLTGANLTAENLcdadlSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSI 218
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 212-244 4.61e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 45.41  E-value: 4.61e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 506990283  212 ANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADL 33
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
198-244 8.58e-07

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 48.01  E-value: 8.58e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 506990283 198 NLQGANLRGAYLIAANLNGADLRGADLIGAdLRDADIRGTDFTNSIF 244
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANL 46
PRK15196 PRK15196
type III secretion system effector PipB2;
198-239 9.80e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 46.15  E-value: 9.80e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 506990283 198 NLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDF 239
Cdd:PRK15196 153 NLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANF 194
PRK15196 PRK15196
type III secretion system effector PipB2;
185-242 1.30e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.77  E-value: 1.30e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506990283 185 RGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRD---ADIRGTDFTNS 242
Cdd:PRK15196 275 QGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDctlTHLRTEDATMS 335
PRK15196 PRK15196
type III secretion system effector PipB2;
186-243 2.42e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.00  E-value: 2.42e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506990283 186 GADLMGANLKKKNLQGANLRGAYLIAANLNGAD-----LRGADLIGADLRDADIRGTDFTNSI 243
Cdd:PRK15196 221 GATLDHANLTGANLQHASLLGCSMIECNCSGANmdhtnLSGATLIRADMSGATLQGATIMAAI 283
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
186-244 4.65e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 40.72  E-value: 4.65e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 506990283  186 GADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIF 244
Cdd:pfam13599  10 GCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNF 68
PRK15197 PRK15197
type III secretion system effector PipB;
188-253 5.30e-05

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 43.76  E-value: 5.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 188 DLMGANLKKKNLQG----------ANLRGA-----YLIAANLNGADLRGADLIGADLRDADIRGTDFTNSiFLTQVQVNA 252
Cdd:PRK15197 155 NLRGVNLAHKDFQGedlsdidasnADFRETtlsnvNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCA-NMSGVNLTA 233


                 .
gi 506990283 253 A 253
Cdd:PRK15197 234 A 234
PRK15196 PRK15196
type III secretion system effector PipB2;
187-253 6.10e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.84  E-value: 6.10e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 506990283 187 ADLMGANLKKKNLQG-----ANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIfLTQVQVNAA 253
Cdd:PRK15196 227 ANLTGANLQHASLLGcsmieCNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAV-LTRANLRKA 297
PRK15196 PRK15196
type III secretion system effector PipB2;
191-242 1.14e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.07  E-value: 1.14e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 506990283 191 GANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNS 242
Cdd:PRK15196 151 GMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT 202
PRK15197 PRK15197
type III secretion system effector PipB;
187-254 1.16e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 42.61  E-value: 1.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 506990283 187 ADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIFLTQVQVNAAR 254
Cdd:PRK15197 204 VNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGSQ 271
PRK15196 PRK15196
type III secretion system effector PipB2;
185-241 1.56e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 39.60  E-value: 1.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506990283 185 RGADLMGANLKKKNLQGANLR-----GAYLIAANLNGADLRGADLIGADLRDADIRGT--DFTN 241
Cdd:PRK15196 195 KGANLSGTSLGDSNFKNACLEdsimcGATLDHANLTGANLQHASLLGCSMIECNCSGAnmDHTN 258
PRK15196 PRK15196
type III secretion system effector PipB2;
154-244 1.74e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 39.22  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 154 MHRAEVNILLLETSELVWKEMNTARKKRIIHRGADLMGANLKKKNLQGANLRGAYLIAANLNGADLRGADLigADLRDAD 233
Cdd:PRK15196 254 MDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL--THLRTED 331

                         90
                 ....*....|.
gi 506990283 234 IRGTDFTNSIF 244
Cdd:PRK15196 332 ATMSTSTQTLF 342
PRK15196 PRK15196
type III secretion system effector PipB2;
186-245 3.50e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.45  E-value: 3.50e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506990283 186 GADLMGANLKKK----------NLQGANLRGAYLIAANLNGADLRGADLIGADLRDADIRGTDFTNSIFL 245
Cdd:PRK15196 171 DADLSGANLEGAvlfmadcegaNFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLL 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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