NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|507041032|ref|WP_016112691|]
View 

MULTISPECIES: DUF3935 domain-containing protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3935 super family cl16076
Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. ...
 2-71 2.00e-26

Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two conserved sequence motifs: FVF and LGV.


The actual alignment was detected with superfamily member pfam13071:

Pssm-ID: 372460  Cd Length: 70  Bit Score: 92.23  E-value: 2.00e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507041032   2 TRVKQIFGIIISFFVFWFSMLGVQMFAEFLDISSLKFIEGKTEAARMFYSPYPFFIVFLITLLSLYFFVV 71
Cdd:pfam13071  1 TKIKQFFGIIISFFIFWFSMLGIQMFAEFFDIESLKFVAGKTAAARAFHSPYPFLIVFIITLLSLYFFVI 70
 
Name Accession Description Interval E-value
DUF3935 pfam13071
Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. ...
 2-71 2.00e-26

Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two conserved sequence motifs: FVF and LGV.


Pssm-ID: 372460  Cd Length: 70  Bit Score: 92.23  E-value: 2.00e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507041032   2 TRVKQIFGIIISFFVFWFSMLGVQMFAEFLDISSLKFIEGKTEAARMFYSPYPFFIVFLITLLSLYFFVV 71
Cdd:pfam13071  1 TKIKQFFGIIISFFIFWFSMLGIQMFAEFFDIESLKFVAGKTAAARAFHSPYPFLIVFIITLLSLYFFVI 70
 
Name Accession Description Interval E-value
DUF3935 pfam13071
Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. ...
 2-71 2.00e-26

Protein of unknown function (DUF3935); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two conserved sequence motifs: FVF and LGV.


Pssm-ID: 372460  Cd Length: 70  Bit Score: 92.23  E-value: 2.00e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507041032   2 TRVKQIFGIIISFFVFWFSMLGVQMFAEFLDISSLKFIEGKTEAARMFYSPYPFFIVFLITLLSLYFFVV 71
Cdd:pfam13071  1 TKIKQFFGIIISFFIFWFSMLGIQMFAEFFDIESLKFVAGKTAAARAFHSPYPFLIVFIITLLSLYFFVI 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH