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Conserved domains on  [gi|507064938|ref|WP_016135747|]
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MULTISPECIES: lasso peptide biosynthesis B2 protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transglut_core3 super family cl24259
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 73-121 2.25e-08

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


The actual alignment was detected with superfamily member pfam13471:

Pssm-ID: 474174  Cd Length: 117  Bit Score: 49.67  E-value: 2.25e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 507064938   73 ASCVSISLTNQIVLYSNGIDAKLKIGFKKIDEKLHSHAWVELeNGEVID 121
Cdd:pfam13471  56 SKCLPRALAAALLLRRRGIPATLVIGVRKDDDPFAAHAWVEV-GGRVVT 103
 
Name Accession Description Interval E-value
Transglut_core3 pfam13471
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 73-121 2.25e-08

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


Pssm-ID: 433236  Cd Length: 117  Bit Score: 49.67  E-value: 2.25e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 507064938   73 ASCVSISLTNQIVLYSNGIDAKLKIGFKKIDEKLHSHAWVELeNGEVID 121
Cdd:pfam13471  56 SKCLPRALAAALLLRRRGIPATLVIGVRKDDDPFAAHAWVEV-GGRVVT 103
lasso_biosyn_B2 NF033537
lasso peptide biosynthesis B2 protein;
75-135 7.29e-07

lasso peptide biosynthesis B2 protein;


Pssm-ID: 468068  Cd Length: 130  Bit Score: 45.81  E-value: 7.29e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507064938  75 CVSISLTNQIVLYSNGIDAKLKIGFKKiDEKLHSHAWVELENGEVIDPQNHLGKLQVMHIF 135
Cdd:NF033537  71 CLPRSLAAALLLRRRGIWPTLCIGVRK-DGPFAAHAWVEADGGVLVGEPEPTDRFTPILTV 130
 
Name Accession Description Interval E-value
Transglut_core3 pfam13471
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 73-121 2.25e-08

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


Pssm-ID: 433236  Cd Length: 117  Bit Score: 49.67  E-value: 2.25e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 507064938   73 ASCVSISLTNQIVLYSNGIDAKLKIGFKKIDEKLHSHAWVELeNGEVID 121
Cdd:pfam13471  56 SKCLPRALAAALLLRRRGIPATLVIGVRKDDDPFAAHAWVEV-GGRVVT 103
lasso_biosyn_B2 NF033537
lasso peptide biosynthesis B2 protein;
75-135 7.29e-07

lasso peptide biosynthesis B2 protein;


Pssm-ID: 468068  Cd Length: 130  Bit Score: 45.81  E-value: 7.29e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 507064938  75 CVSISLTNQIVLYSNGIDAKLKIGFKKiDEKLHSHAWVELENGEVIDPQNHLGKLQVMHIF 135
Cdd:NF033537  71 CLPRSLAAALLLRRRGIWPTLCIGVRK-DGPFAAHAWVEADGGVLVGEPEPTDRFTPILTV 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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