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Conserved domains on  [gi|507080641|ref|WP_016151395|]
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MULTISPECIES: lipoprotein toxin entericidin B [Citrobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10081 super family cl22944
lipoprotein toxin entericidin B;
1-48 2.04e-17

lipoprotein toxin entericidin B;


The actual alignment was detected with superfamily member PRK10081:

Pssm-ID: 451461  Cd Length: 48  Bit Score: 67.02  E-value: 2.04e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 507080641  1 MVKKTIAAIFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAATKAQQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
 
Name Accession Description Interval E-value
PRK10081 PRK10081
lipoprotein toxin entericidin B;
1-48 2.04e-17

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 67.02  E-value: 2.04e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 507080641  1 MVKKTIAAIFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAATKAQQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
COG5510 COG5510
Predicted small secreted protein [Function unknown];
4-47 7.70e-12

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 52.54  E-value: 7.70e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 507080641  4 KTIAAIFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAATKAQ 47
Cdd:COG5510   2 KKLILLLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 24-43 6.85e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 32.27  E-value: 6.85e-04
                         10        20
                 ....*....|....*....|
gi 507080641  24 TTKGVGQDISEGGSAISGAA 43
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
 
Name Accession Description Interval E-value
PRK10081 PRK10081
lipoprotein toxin entericidin B;
1-48 2.04e-17

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 67.02  E-value: 2.04e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 507080641  1 MVKKTIAAIFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAATKAQQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
COG5510 COG5510
Predicted small secreted protein [Function unknown];
4-47 7.70e-12

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 52.54  E-value: 7.70e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 507080641  4 KTIAAIFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAATKAQ 47
Cdd:COG5510   2 KKLILLLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 24-43 6.85e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 32.27  E-value: 6.85e-04
                         10        20
                 ....*....|....*....|
gi 507080641  24 TTKGVGQDISEGGSAISGAA 43
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK09810 PRK09810
lipoprotein antitoxin entericidin A;
9-44 4.53e-03

lipoprotein antitoxin entericidin A;


Pssm-ID: 137533  Cd Length: 41  Bit Score: 30.76  E-value: 4.53e-03
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 507080641  9 IFSVLVLSSVLTACNTTKGVGQDISEGGSAISGAAT 44
Cdd:PRK09810  6 IVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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