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Conserved domains on  [gi|507082966|ref|WP_016153715|]
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MULTISPECIES: DUF2542 family protein [Citrobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2542 super family cl12397
Protein of unknown function (DUF2542); This family of proteins with unknown function appears ...
 1-79 7.80e-36

Protein of unknown function (DUF2542); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


The actual alignment was detected with superfamily member pfam10808:

Pssm-ID: 151258  Cd Length: 79  Bit Score: 115.69  E-value: 7.80e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507082966   1 MDVQTLFVVLAFLLIPVFCFREAWKGWRSGAVDKIKKNAREPVYAYRNQEPLQFWSYVLVYAGCGCLSFGMVIYLVFYR 79
Cdd:pfam10808  1 MDVQTIFVVIAFLLVPLFCFREAWKGWRSGAVDKIVKNAREPVYVYRAETPLLYWSYIGLYLGMGVLTLGMIIYLLFYR 79
 
Name Accession Description Interval E-value
DUF2542 pfam10808
Protein of unknown function (DUF2542); This family of proteins with unknown function appears ...
 1-79 7.80e-36

Protein of unknown function (DUF2542); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


Pssm-ID: 151258  Cd Length: 79  Bit Score: 115.69  E-value: 7.80e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507082966   1 MDVQTLFVVLAFLLIPVFCFREAWKGWRSGAVDKIKKNAREPVYAYRNQEPLQFWSYVLVYAGCGCLSFGMVIYLVFYR 79
Cdd:pfam10808  1 MDVQTIFVVIAFLLVPLFCFREAWKGWRSGAVDKIVKNAREPVYVYRAETPLLYWSYIGLYLGMGVLTLGMIIYLLFYR 79
 
Name Accession Description Interval E-value
DUF2542 pfam10808
Protein of unknown function (DUF2542); This family of proteins with unknown function appears ...
 1-79 7.80e-36

Protein of unknown function (DUF2542); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


Pssm-ID: 151258  Cd Length: 79  Bit Score: 115.69  E-value: 7.80e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507082966   1 MDVQTLFVVLAFLLIPVFCFREAWKGWRSGAVDKIKKNAREPVYAYRNQEPLQFWSYVLVYAGCGCLSFGMVIYLVFYR 79
Cdd:pfam10808  1 MDVQTIFVVIAFLLVPLFCFREAWKGWRSGAVDKIVKNAREPVYVYRAETPLLYWSYIGLYLGMGVLTLGMIIYLLFYR 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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