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Conserved domains on  [gi|507083070|ref|WP_016153819|]
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MULTISPECIES: 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [Citrobacter]

Protein Classification

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE( domain architecture ID 10014951)

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE

Gene Ontology:  GO:1901505|GO:0009103|GO:0055085|GO:0009245
TCDB:  2.A.7.22.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15051 PRK15051
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
 1-111 6.71e-47

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional


:

Pssm-ID: 185011  Cd Length: 111  Bit Score: 146.11  E-value: 6.71e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070   1 MIWIALVLASLLSVCGQLCQKQASRPVPVRARKRHITLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLA 80
Cdd:PRK15051   1 MIWLTLVFASLLSVAGQLCQKQATRPVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLA 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 507083070  81 AWKIWREPVTPRHWLGVGLIITGIFILGSAV 111
Cdd:PRK15051  81 AVKLWHEPVSPRHWCGVAFIIGGIVILGSTV 111
 
Name Accession Description Interval E-value
PRK15051 PRK15051
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
 1-111 6.71e-47

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional


Pssm-ID: 185011  Cd Length: 111  Bit Score: 146.11  E-value: 6.71e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070   1 MIWIALVLASLLSVCGQLCQKQASRPVPVRARKRHITLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLA 80
Cdd:PRK15051   1 MIWLTLVFASLLSVAGQLCQKQATRPVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLA 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 507083070  81 AWKIWREPVTPRHWLGVGLIITGIFILGSAV 111
Cdd:PRK15051  81 AVKLWHEPVSPRHWCGVAFIIGGIVILGSTV 111
EmrE COG2076
Multidrug transporter EmrE and related cation transporters [Defense mechanisms];
3-107 6.96e-13

Multidrug transporter EmrE and related cation transporters [Defense mechanisms];


Pssm-ID: 441679  Cd Length: 105  Bit Score: 59.34  E-value: 6.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070   3 WIALVLASLLSVCGQLCQKQASRPVPVrarkrhitLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLS-LNFVWVTLAA 81
Cdd:COG2076    2 WLYLLLAGLLEVVWTLALKLSDGFTRL--------LPSVLTVVGYALSFYLLSLALKTLPVGTAYAVWTgIGAVGTALVG 73

                         90       100
                 ....*....|....*....|....*.
gi 507083070  82 WKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:COG2076   74 ILLFGEPLSLARLLGIALIIAGVVGL 99
EamA pfam00892
EamA-like transporter family; This family includes many hypothetical membrane proteins of ...
 40-107 2.75e-04

EamA-like transporter family; This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.


Pssm-ID: 307170  Cd Length: 136  Bit Score: 37.56  E-value: 2.75e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507083070   40 IGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:pfam00892  67 LYLGVLGTFLGFLLYFYGLKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLI 134
 
Name Accession Description Interval E-value
PRK15051 PRK15051
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
 1-111 6.71e-47

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional


Pssm-ID: 185011  Cd Length: 111  Bit Score: 146.11  E-value: 6.71e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070   1 MIWIALVLASLLSVCGQLCQKQASRPVPVRARKRHITLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLA 80
Cdd:PRK15051   1 MIWLTLVFASLLSVAGQLCQKQATRPVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLA 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 507083070  81 AWKIWREPVTPRHWLGVGLIITGIFILGSAV 111
Cdd:PRK15051  81 AVKLWHEPVSPRHWCGVAFIIGGIVILGSTV 111
EmrE COG2076
Multidrug transporter EmrE and related cation transporters [Defense mechanisms];
3-107 6.96e-13

Multidrug transporter EmrE and related cation transporters [Defense mechanisms];


Pssm-ID: 441679  Cd Length: 105  Bit Score: 59.34  E-value: 6.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070   3 WIALVLASLLSVCGQLCQKQASRPVPVrarkrhitLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLS-LNFVWVTLAA 81
Cdd:COG2076    2 WLYLLLAGLLEVVWTLALKLSDGFTRL--------LPSVLTVVGYALSFYLLSLALKTLPVGTAYAVWTgIGAVGTALVG 73

                         90       100
                 ....*....|....*....|....*.
gi 507083070  82 WKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:COG2076   74 ILLFGEPLSLARLLGIALIIAGVVGL 99
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 42-104 1.07e-06

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


Pssm-ID: 235094  Cd Length: 129  Bit Score: 43.83  E-value: 1.07e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 507083070  42 LALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKI--WREPVTPRHWLGVGLIITGI 104
Cdd:PRK02971  53 LGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLpwFNETFSLKKTLGVACIMLGV 117
RhaT COG0697
Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and ...
 23-107 1.23e-05

Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only];


Pssm-ID: 440461 [Multi-domain]  Cd Length: 290  Bit Score: 42.14  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070  23 ASRPVPVRARKRHITLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKIWREPVTPRHWLGVGLIIT 102
Cdd:COG0697   52 LRGRRLPPLSRRDWLLLLLRGLLGLALAFLLFFLALQYTPAALAALLLALAPLFVALLAALLLGERLSRRRWLGLLLGFA 131


                 ....*
gi 507083070 103 GIFIL 107
Cdd:COG0697  132 GVLLI 136
RibN COG2510
Riboflavin transporter RibN, EamA domain [Coenzyme transport and metabolism];
38-107 6.74e-05

Riboflavin transporter RibN, EamA domain [Coenzyme transport and metabolism];


Pssm-ID: 442000  Cd Length: 138  Bit Score: 39.40  E-value: 6.74e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507083070  38 LWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:COG2510   66 LFLLLSGLATGLSWLFYFRALKLGPASIVAPIDKLSPVFTVLLSVLFLGERLTLKQIIGILLIVAGVILL 135
EamA pfam00892
EamA-like transporter family; This family includes many hypothetical membrane proteins of ...
 40-107 2.75e-04

EamA-like transporter family; This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.


Pssm-ID: 307170  Cd Length: 136  Bit Score: 37.56  E-value: 2.75e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507083070   40 IGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:pfam00892  67 LYLGVLGTFLGFLLYFYGLKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLI 134
RhaT COG0697
Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and ...
 34-107 4.11e-04

Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only];


Pssm-ID: 440461 [Multi-domain]  Cd Length: 290  Bit Score: 37.90  E-value: 4.11e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 507083070  34 RHITLWIGLALASLGLAMLLWLAVLQNIPVGIAYPMLSLNFVWVTLAAWKIWREPVTPRHWLGVGLIITGIFIL 107
Cdd:COG0697  208 AAWLALLYLGLFGTALAYLLWFRALRRLGASRAAPLTYLEPVFAVLLGWLLLGEPLTPLQLLGAALILAGVLLA 281
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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