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Conserved domains on  [gi|507085446|ref|WP_016156188|]
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MULTISPECIES: flagellar basal body rod protein FlgF [Citrobacter]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.30e-142

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 399.23  E-value: 1.30e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLtqaaqaTRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDD 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 507085446 240 NAGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.30e-142

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 399.23  E-value: 1.30e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLtqaaqaTRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDD 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 507085446 240 NAGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 1.29e-141

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 396.81  E-value: 1.29e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLTQaaqatrGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDD 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 507085446 240 NAGRANQLLSMS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.81e-60

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 189.39  E-value: 3.81e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446    4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLS--LPTRTLVVASTPGADMTPGQMDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   82 LQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEA-GPIAVPE-GSEVTIAADGTISALNPGDpanTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWGgGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507085446  159 GRLKLVKATG-SEVQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANFPNpDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 3.09e-19

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 78.85  E-value: 3.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507085446  169 SEVQRGDDGMFRLTQAAqatrgATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDDNAGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGA-----PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.30e-142

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 399.23  E-value: 1.30e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLtqaaqaTRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDD 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 507085446 240 NAGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 1.29e-141

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 396.81  E-value: 1.29e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLTQaaqatrGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDD 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 507085446 240 NAGRANQLLSMS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-211 2.81e-84

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 250.15  E-value: 2.81e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTSRPLDV 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  81 ALQQDGWLAVQTADGSEGYTRNGAIQVSPTGELTIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVGR 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 507085446 161 LKLVKATGSEVQRGDDGMFRLTQAAQATRGATLQADPSIRvmSGVLEGSNV 211
Cdd:PRK12643 161 IKRVQATAGEMMHGDDGLFHLTPETQQARGAQLPNDPLVK--PGEREHQWL 209
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.81e-60

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 189.39  E-value: 3.81e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446    4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLS--LPTRTLVVASTPGADMTPGQMDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   82 LQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEA-GPIAVPE-GSEVTIAADGTISALNPGDpanTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWGgGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 507085446  159 GRLKLVKATG-SEVQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANFPNpDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-251 3.13e-59

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 187.84  E-value: 3.13e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLN-ALRAVPVEGLSLPTRTLVVASTpgaDMTPGQMDYTSRPLD 79
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFIlAIQNHNVKNLYNSDKKITKEYY---NLSPGTLRYTGRNLD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  80 VALQQDGWLAVQTADGSEGYTRNGAIQVSPTGELTIQGHPVIGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12641  78 LFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 160 RLKLVKATGSEVQRGDDGMFRLTQAAQA--TRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSV 237
Cdd:PRK12641 158 SLKLVQLPSQDLIQKENGLFYLKKNNEInkKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISMC 237

                        250
                 ....*....|....
gi 507085446 238 DDNAGRANQLLSMS 251
Cdd:PRK12641 238 DQNTEYANQLININ 251
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-249 3.16e-53

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 172.69  E-value: 3.16e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   5 IYTA-MGAASQTLNQQaVTASNLANASTPGFRAQ-----------------LNALRAVPVEGLSLPTRTLVVASTPgaDM 66
Cdd:COG4786    1 LYTAaSGMLAQQTRLD-VISNNLANVNTTGFKRDravfedllyqlirrpgaPSSQGTQTPVGLQLGTGVRVAATQT--DF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  67 TPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAVPEG-SEVTIAADGTIS 144
Cdd:COG4786   78 TQGSLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLvTSDGYPVLPENGPITIPEDaTSITISEDGTVS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 145 ALnpgDPANTVAPVGRLKLVKATGSE-VQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIAN 223
Cdd:COG4786  158 VT---LADGDGQQVGQLGLVDFANPAgLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEA 234

                        250       260
                 ....*....|....*....|....*.
gi 507085446 224 ARRFEMQMKIISSVDDNAGRANQLLS 249
Cdd:COG4786  235 QRAYEANSKVIQTADEMLGKANNLRG 260
flgF PRK12689
flagellar basal-body rod protein FlgF;
18-249 1.23e-32

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 119.47  E-value: 1.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  18 QQAVTASNLANASTPGFRAQlnalRAVPVEGLS---------LPTRTLVVASTPGA--DMTPGQMDYTSRPLDVALQQDG 86
Cdd:PRK12689  18 QLDVVANNVANVNTNGFKAR----SSLFQEYLMpgahednfqRPDRRVSYVQDRGTplDLSQGPLEQTKNPLDVAIDGDA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  87 WLAVQTADGsEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGPIAV-PEGSEVTIAADGTISALNPGDPANTVApvGRLKLV 164
Cdd:PRK12689  94 FLAVQTPQG-ERYTRDGALEINAQGQLvTSDGYPVLGTGGPITFqPTDTGIAISPDGTVSVNEGTATTDSIR--GKLRLV 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 165 K-ATGSEVQRGDDGMFRLTQAAQAtrgatlqADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDDNAGR 243
Cdd:PRK12689 171 TfANPQALKKEGANLYAATAPARP-------ADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKT 243


                 ....*.
gi 507085446 244 ANQLLS 249
Cdd:PRK12689 244 AIERLA 249
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 4-248 1.56e-32

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 119.38  E-value: 1.56e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446    4 AIYTA-MGAASQTLNQQaVTASNLANASTPGF---RAQLNAL----------------RAVPVeGLSLPTRTLVVASTpg 63
Cdd:TIGR02488   1 ALWTAaTGMNAQQTNMD-VISNNLANVNTTGFkkdRAEFEDLlyqterqpgaqsseqqTILPV-GVQVGLGVRVVATQ-- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   64 ADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEagpIAVPEG-SEVTIAADG 141
Cdd:TIGR02488  77 KLFTQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLvTSNGYPLQPE---ITIPENaTSITVGSDG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  142 TISALNPGDPANTVapVGRLKLVK-ATGSEVQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDM 220
Cdd:TIGR02488 154 EVSVRQGGQTEPQE--VGQITLATfINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDM 231

                         250       260
                  ....*....|....*....|....*...
gi 507085446  221 IANARRFEMQMKIISSVDDNAGRANQLL 248
Cdd:TIGR02488 232 ITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgF PRK12690
flagellar hook-basal body complex protein;
1-239 2.93e-32

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 117.86  E-value: 2.93e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQlNALRAVPVEGLSLPTRTLVVASTPG--ADMTPGQMDYTSRPL 78
Cdd:PRK12690   1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRRE-GLVFSEYVKSLDSGEASLSMARASGrqTDLEQGGLTQTGGQF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  79 DVALQQDGWLAVQTADGsEGYTRNGAIQVSPTGEL-TIQGHPVIGEAG-PIAVPEGSE-VTIAADGTISAlnPGDpantv 155
Cdd:PRK12690  80 DFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELvDPDGNRLLDAGGaPIFIPPDARsVAVGADGTLSA--DGQ----- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 156 aPVGRLKLVKATGS-EVQRGDDGMFRLTQAAQATRGAtlqadpsiRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKII 234
Cdd:PRK12690 152 -PLGQIGLYQPTDPlGLRREGGTRFRAEGGVEPAEGA--------RLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFL 222


                 ....*
gi 507085446 235 SSVDD 239
Cdd:PRK12690 223 DREDE 227
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-248 2.83e-30

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 113.42  E-value: 2.83e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTA-MGAASQTLNQqAVTASNLANASTPGFRAQlnalRAV----------------------PVeGLSLPTRTLV 57
Cdd:PRK12693   1 MIRALWIAkTGLDAQQTNI-DVISNNLANVNTTGFKKS----RAVfedllyqtirqpgaqssqnttlPS-GLQVGTGVRP 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  58 VASTpgADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEagpIAVPEGSE-V 135
Cdd:PRK12693  75 VATQ--KIFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLvTSGGYPLQPE---ITIPENATsI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 136 TIAADGTISALNPGDPANTVapVGRLKLV--------KATGsevqrgdDGMFRLTQAAqatrGATLQADPSIR----VMS 203
Cdd:PRK12693 150 TIGTDGTVSVTQAGQAAPQV--VGQITLTdfinpaglESIG-------ENLYLETAAS----GAPIEGTPGLNglgtLRQ 216

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 507085446 204 GVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDDNAGRANQLL 248
Cdd:PRK12693 217 GFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-248 2.06e-26

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 102.82  E-value: 2.06e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVpvegLSLPTRTLVVASTPGADMT---PGQMDYTSRP 77
Cdd:PRK12642   1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTV----VSDTASKKVAFVSQGKSYLsteAGPLTKTGNP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  78 LDVALQQDGWLAVQTADGSeGYTRNGAIQVSPTGEL-TIQGHPVIGEAG-PIAV-PEGSEVTIAADGTISAlnpgdpaNT 154
Cdd:PRK12642  77 LDFAVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELvSVTGYPVLDAGGaPIQLnPGGGEPTIGADGAIYQ-------NG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 155 VaPVGRLKLVKATGSE-VQRGDDGMFRLTQAAQAtrgatLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKI 233
Cdd:PRK12642 149 V-QVGAIGLFEIDADAgLLRYGNSGVIPDKPPQP-----VVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESVSSL 222

                        250
                 ....*....|....*
gi 507085446 234 ISSVDDNAGRANQLL 248
Cdd:PRK12642 223 MRQSESSVSEAIKTL 237
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-244 1.61e-21

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 90.14  E-value: 1.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAqlNALRAVPVEGLSL----------PTRTLVVASTPGADM---- 66
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKS--DNLAFKSFEDVLIenydkkvgnkNVKNIIGGLSMGSKIdevn 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  67 ---TPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGE------AGPIAVPEGsEVT 136
Cdd:PRK12818  79 tlfTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLvNDSGYYVLGRnnatgaREPINVGNG-KFS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 137 IAADGTIS-ALNPGDPANTVAPVGRLKLVKAtgsevqrGDDgMFRLTQAAQATRGATLQadpsirvmsGVLEGSNVKPVA 215
Cdd:PRK12818 158 TDADGNISlDGNASYKFNVADFNDYNSLKKI-------GDN-LYTGNNPQNINGAIVRQ---------NSLEKSNVNVTN 220

                        250       260
                 ....*....|....*....|....*....
gi 507085446 216 AMSDMIANARRFEMQMKIISSVDDNAGRA 244
Cdd:PRK12818 221 EMVNMMTTMRSFETNQKIVQSIDETLGKA 249
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-247 7.57e-20

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 85.51  E-value: 7.57e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQ-----------LNALRAVPVEGLSLPTRTLVVASTPGADMTPGQMDYTS 75
Cdd:PRK12817  10 SGMNAQQEKLD---SISNNLANVNTTGYKREdvsfsdlvyetLDRKGYPTNDKPEIITGTGVKATNWIRDNQQGNLLTTG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  76 RPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGELT--------IQGHPVIGEAGPIAVPEGSEVTIAADGTISALN 147
Cdd:PRK12817  87 NKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVddngnrleIQLEAGVGINNRNTGFDSNNFTVDEDGGISVKN 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 148 PGdpaNTVAPVGRLKLVKATGSE--VQRGDDgMFRLTQAAQATrgatLQADPSIrvMSGVLEGSNVKPVAAMSDMIANAR 225
Cdd:PRK12817 167 VD---GQNKKVGKINIYNAVGNDafISIGDN-LYVPSDGVQVF----LNNDVDI--LQGYLENSNVDLGKEMTDMIITQR 236

                        250       260
                 ....*....|....*....|..
gi 507085446 226 RFEMQMKIISSVDDNAGRANQL 247
Cdd:PRK12817 237 AFQLSSKGIKTADEMWGIINNM 258
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 127-228 1.35e-19

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 80.37  E-value: 1.35e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  127 IAVPEGSEVTIAADGTISAlnpgdpaNTVaPVGRLKLVKATGSE-VQRGDDGMFRltqaaqATRGATLQADPSIRVMSGV 205
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQ-------DGE-EVGRLGLVNFDNPNqLQREGDGLFR------ATGGGPAPADSNVRVVQGY 66

                          90       100
                  ....*....|....*....|...
gi 507085446  206 LEGSNVKPVAAMSDMIANARRFE 228
Cdd:TIGR02490  67 LEGSNVNAVSEMVDMIEAQRAYE 89
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 3.09e-19

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 78.85  E-value: 3.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 507085446  169 SEVQRGDDGMFRLTQAAqatrgATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDDNAGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGA-----PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-247 4.77e-19

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 83.70  E-value: 4.77e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAmgaASQTLNQQA---VTASNLANASTPGFRAQlnalRAvpvEGLSLPTRTLVVASTPGADMT---------- 67
Cdd:PRK12816   1 MMRSLWTA---ASGMNAQQFnidTIANNLANVNTTGFKKI----RA---EFEDLIYQTQRRAGTPATEDTvtplgvqvgh 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  68 ------------PGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEagpIAVPEG-- 132
Cdd:PRK12816  71 gvkvaatqrlfeQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLvTSNGYRLLPE---IIFPENyi 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 133 -SEVTIAADGTISAL--NPGDPANtvapVGRLKLVK-ATGSEVQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEG 208
Cdd:PRK12816 148 lNSITISEEGIVSVKvgEDNDPIE----LGQIELYRfVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEM 223

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 507085446 209 SNVKPVAAMSDMIANARRFEMQMKIISSVDDNAGRANQL 247
Cdd:PRK12816 224 SNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-239 7.40e-19

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 82.88  E-value: 7.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGF---RAQLNALRAVPVEGLSLPT--------RTLVVASTPGA-D--M 66
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFkksRVTFKDMVSQTISGASGPTanrggvnsKQVGLGSQLGAiDtiH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  67 TPGQMDYTSRPLDVALQQDGWLAVQTADGSEgYTRNGAIQVSPTGEL-TIQGHPVIGEAG-PIAVPEGSE-VTIAADGTI 143
Cdd:PRK12636  81 TQGSLQTTGRPLDLAISGDGFFRVGDGDNTA-YTRAGNFYLDNEGNIvNADGLYLLGMNGgRIQIPTDAQsFSIGADGTV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 144 SALnpgDPANTVAPVGRLKLVK-ATGSEVQRGDDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIA 222
Cdd:PRK12636 160 SYV---DAGGELQTAGQIGLATfANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIV 236

                        250
                 ....*....|....*..
gi 507085446 223 NARRFEMQMKIISSVDD 239
Cdd:PRK12636 237 AQRGFQANTRIITTSDE 253
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 8-242 8.90e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 79.89  E-value: 8.90e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   8 AMGAASQTLNQQaVTASNLANASTPGF---RAQLNALRAVPVEGLSLPTRTLVVASTPGADM-------------TPGQM 71
Cdd:PRK12692   8 ATGMSAQQLNLE-VIANNIANLNTTGFkgaRAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLglgvraaairnlhRQGSL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  72 DYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVigeAGPIAVPEGS-EVTIAADGTISALNPG 149
Cdd:PRK12692  87 AQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLvTMEGYAV---DPAILIPQNTtQVTINESGQVFAKIDG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446 150 DpantVAP--VGRLKLVK-ATGSEVQRGDDGMFRLTqAAQATRGATLQADPSI-RVMSGVLEGSNVKPVAAMSDMIANAR 225
Cdd:PRK12692 164 Q----VAPqnLGQLTLANfANESGLEPLGNGLYRET-PASGAPVVGNPGDVGFgKIQQGYLEGSNVDPVKEITSLITAQR 238

                        250
                 ....*....|....*..
gi 507085446 226 RFEMQMKIISSVDDNAG 242
Cdd:PRK12692 239 AFEMNSKVIQAADEMAG 255
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
7-114 1.93e-09

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 57.10  E-value: 1.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQ--------LNALRAVPVEGLSLPTRTLVVAStpgaDMTPGQMDYTSRPL 78
Cdd:COG1749   10 SGLNAASTALD---VIGNNIANSNTVGFKSSraefadlvAQSLSGANPTQVGGGVRVASVAQ----IFTQGSLQSTGNAL 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 507085446  79 DVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGELT 114
Cdd:COG1749   83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLV 118
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-129 5.22e-09

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 56.00  E-value: 5.22e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   7 TAMGAASQTLNqqaVTASNLANASTPGF---RAQ-----LNALRAVPVE-GLSlptrtlVVASTPGADMTPGQMDYTSRP 77
Cdd:PRK05682   8 SGLNAASNRLD---VIGNNIANANTTGFkssRAEfadlyANSAGTNPTQvGSG------VKVAGVAQQFSQGSITSTGNS 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 507085446  78 LDVALQQDGWLAVqTADGSEGYTRNGAIQVSPTGELT------IQGHPVIGEAGPIAV 129
Cdd:PRK05682  79 LDLAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVnaagyyLQGYPADADGGTPPT 135
flgG PRK12819
flagellar basal-body rod protein FlgG;
21-238 1.11e-08

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 54.11  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  21 VTASNLANASTPGFRAQLNALRAVPVE-------GLSLPTRTLVVASTPGA---DMTPGQMDYTSRPLDVALQ----QDG 86
Cdd:PRK12819  20 VHSNNVANAQTTGFKAENMTSKVFDVQdtyrrgdGAVTNIGSVDYAVVPAAthvNLVQGNIQMTNSDTDFFLDdgpaGTS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446  87 WLAVQTADGSEGYTRNGAIQVSPTGEL-TIQGHPVIGEAGP-IAVPEGSEVTIAADGTISAlnpgdpANTVAPVGRL--K 162
Cdd:PRK12819 100 SFFVTSKNGETFLTRDGSFTLNSDRYLqTASGAFVMGENNErIRIPEGAKVAVQADGTLYD------AVTQNNIARLqtK 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507085446 163 LVKATGSE--VQRGDDgmfRLTQAAQATrgATLQADPSIrVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVD 238
Cdd:PRK12819 174 TVSAEQNDrlVQRENK---SFTLAEGNI--ANLPNGQGI-VKNGMLENSNVDMTKEMADLMTDQRMIQASQRVMTSFD 245
flgE PRK06803
flagellar basal body protein FlaE;
7-120 2.53e-07

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 50.93  E-value: 2.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507085446   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQLNALRAVPVEGLSLptrTLVVASTPGADMTPGQMDYTSRPLDVALQQDG 86
Cdd:PRK06803   8 SGLNATTQQLN---TISNNIANSSTKGFKGSRTEFSSIYNGGQPG---GVEVSSVSQNFSKDGSLTYTGRGLDLAISGGG 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 507085446  87 WLAVQTADGSEGYTRNGAIQVSPTGELT------IQGHPV 120
Cdd:PRK06803  82 FFVLKESDGDTAYTRAGMFRSDVDGYLTdpqgmkLQGYPV 121
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 1.15e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 41.01  E-value: 1.15e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 507085446    5 IYTAMGAASQTLNQQAVTASNLANASTPGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-37 1.32e-04

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 40.66  E-value: 1.32e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 507085446   1 MDHAIYTAMGAASQTLN----QQAVTASNLANASTPGFRAQ 37
Cdd:COG1815    1 MSILFDKTFGLLEKALDlrslRQEVIASNIANADTPGYKAR 41
flgB PRK12627
FlgB family protein;
19-37 8.93e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 35.48  E-value: 8.93e-03
                         10
                 ....*....|....*....
gi 507085446  19 QAVTASNLANASTPGFRAQ 37
Cdd:PRK12627  22 QAVVARNVANADTPGYRAR 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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