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Conserved domains on  [gi|510801625|ref|WP_016176414|]
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DUF5960 family protein [Enterococcus durans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5960 pfam19385
Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene ...
 8-92 1.00e-20

Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000561) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


:

Pssm-ID: 466064  Cd Length: 83  Bit Score: 78.37  E-value: 1.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510801625    8 HLLWFKYDPSEKFVKDLYKVWDTEVVFLAIETSLLVNLHYSNKNYFKIPAAKTRMKKDVYFLFDVVTNvpDVRAKHKRFD 87
Cdd:pfam19385   1 LQFDYFSDNYDKFEKDFYKYSNTDIPLTFLTDDILLLMAKTQKNYFRLPAENSKDGKDHYFYFEVETL--KDNKLIKLYT 78


                  ....*
gi 510801625   88 YVKYT 92
Cdd:pfam19385  79 YLGHT 83
 
Name Accession Description Interval E-value
DUF5960 pfam19385
Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene ...
 8-92 1.00e-20

Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000561) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


Pssm-ID: 466064  Cd Length: 83  Bit Score: 78.37  E-value: 1.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510801625    8 HLLWFKYDPSEKFVKDLYKVWDTEVVFLAIETSLLVNLHYSNKNYFKIPAAKTRMKKDVYFLFDVVTNvpDVRAKHKRFD 87
Cdd:pfam19385   1 LQFDYFSDNYDKFEKDFYKYSNTDIPLTFLTDDILLLMAKTQKNYFRLPAENSKDGKDHYFYFEVETL--KDNKLIKLYT 78


                  ....*
gi 510801625   88 YVKYT 92
Cdd:pfam19385  79 YLGHT 83
 
Name Accession Description Interval E-value
DUF5960 pfam19385
Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene ...
 8-92 1.00e-20

Family of unknown function (DUF5960); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000561) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


Pssm-ID: 466064  Cd Length: 83  Bit Score: 78.37  E-value: 1.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510801625    8 HLLWFKYDPSEKFVKDLYKVWDTEVVFLAIETSLLVNLHYSNKNYFKIPAAKTRMKKDVYFLFDVVTNvpDVRAKHKRFD 87
Cdd:pfam19385   1 LQFDYFSDNYDKFEKDFYKYSNTDIPLTFLTDDILLLMAKTQKNYFRLPAENSKDGKDHYFYFEVETL--KDNKLIKLYT 78


                  ....*
gi 510801625   88 YVKYT 92
Cdd:pfam19385  79 YLGHT 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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