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Conserved domains on  [gi|510826635|ref|WP_016199776|]
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1,2-phenylacetyl-CoA epoxidase subunit PaaB [Elizabethkingia meningoseptica]

Protein Classification

PaaB family protein( domain architecture ID 10007418)

PaaB family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 2-93 6.41e-49

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 442683  Cd Length: 98  Bit Score: 150.10  E-value: 6.41e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635  2 SQLDMWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHP 81
Cdd:COG3460   7 TEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDAFFDPAADKVYRHP 86

                        90
                ....*....|..
gi 510826635 82 TFYEIPNDVKNM 93
Cdd:COG3460  87 TFYEVPEKVEHM 98
 
Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 2-93 6.41e-49

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442683  Cd Length: 98  Bit Score: 150.10  E-value: 6.41e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635  2 SQLDMWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHP 81
Cdd:COG3460   7 TEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDAFFDPAADKVYRHP 86

                        90
                ....*....|..
gi 510826635 82 TFYEIPNDVKNM 93
Cdd:COG3460  87 TFYEVPEKVEHM 98
PaaB pfam06243
Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to ...
 6-90 3.03e-46

Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.


Pssm-ID: 428844  Cd Length: 88  Bit Score: 142.79  E-value: 3.03e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635   6 MWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHPTFYE 85
Cdd:pfam06243  4 LWEVFVRSKRGLPHQHVGSLHAPDAEMALQNARDVYTRRNEGVSIWVVPSSDITASDPEEKEPFFEPADDKVYRHPTFYG 83


                 ....*
gi 510826635  86 IPNDV 90
Cdd:pfam06243 84 VPEEV 88
PA_CoA_Oxy2 TIGR02157
phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
 6-93 2.96e-37

phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 274002  Cd Length: 90  Bit Score: 120.35  E-value: 2.96e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635   6 MWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHPTFYE 85
Cdd:TIGR02157  3 LYEVFVRSKSGLPHQHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTPDEREEFFDPAEDKVYRHPTFYG 82


                 ....*...
gi 510826635  86 IPNDVKNM 93
Cdd:TIGR02157 83 IPDRVWHM 90
 
Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 2-93 6.41e-49

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442683  Cd Length: 98  Bit Score: 150.10  E-value: 6.41e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635  2 SQLDMWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHP 81
Cdd:COG3460   7 TEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDAFFDPAADKVYRHP 86

                        90
                ....*....|..
gi 510826635 82 TFYEIPNDVKNM 93
Cdd:COG3460  87 TFYEVPEKVEHM 98
PaaB pfam06243
Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to ...
 6-90 3.03e-46

Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.


Pssm-ID: 428844  Cd Length: 88  Bit Score: 142.79  E-value: 3.03e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635   6 MWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHPTFYE 85
Cdd:pfam06243  4 LWEVFVRSKRGLPHQHVGSLHAPDAEMALQNARDVYTRRNEGVSIWVVPSSDITASDPEEKEPFFEPADDKVYRHPTFYG 83


                 ....*
gi 510826635  86 IPNDV 90
Cdd:pfam06243 84 VPEEV 88
PA_CoA_Oxy2 TIGR02157
phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
 6-93 2.96e-37

phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 274002  Cd Length: 90  Bit Score: 120.35  E-value: 2.96e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510826635   6 MWEVFIQTKPGLSHKHAGTVQAPTAEMALQNARDVYTRRKEGTCVWVVPSKYIVSSEGMDQEAFFDPADDKLYRHPTFYE 85
Cdd:TIGR02157  3 LYEVFVRSKSGLPHQHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTPDEREEFFDPAEDKVYRHPTFYG 82


                 ....*...
gi 510826635  86 IPNDVKNM 93
Cdd:TIGR02157 83 IPDRVWHM 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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