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Conserved domains on  [gi|512565473|ref|WP_016449311|]
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MULTISPECIES: flagellar basal body rod protein FlgF [Delftia]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11469171)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-245 1.46e-124

Flagellar basal body rod protein FlgF [Cell motility];


:

Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 353.28  E-value: 1.46e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKTGNQLP---VAV 157
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGD-GGPITIPPGAKVTIGADGTISIVPAGGPPnalAEV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 158 GRVKLATPaEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKT 237
Cdd:COG4787  160 GRLKLVNP-DPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQA 238


                 ....*...
gi 512565473 238 ASQLLSMN 245
Cdd:COG4787  239 ANQLLRLS 246
 
Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-245 1.46e-124

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 353.28  E-value: 1.46e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKTGNQLP---VAV 157
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGD-GGPITIPPGAKVTIGADGTISIVPAGGPPnalAEV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 158 GRVKLATPaEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKT 237
Cdd:COG4787  160 GRLKLVNP-DPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQA 238


                 ....*...
gi 512565473 238 ASQLLSMN 245
Cdd:COG4787  239 ANQLLRLS 246
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-245 5.28e-102

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 296.38  E-value: 5.28e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKT---GNQLPVAV 157
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGD-GGPIAVPPGAKITIGADGTISALPpgdPPNAVAEV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 158 GRVKLATPaEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKT 237
Cdd:PRK12640 160 GRLKLVNP-PAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQA 238


                 ....*...
gi 512565473 238 ASQLLSMN 245
Cdd:PRK12640 239 ANQLLRMS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-224 3.58e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 204.79  E-value: 3.58e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473    3 RIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAG--TRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSgqVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPEST-ISLGSDGTLTAKTGNQLPVAVGR 159
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGGGPITLPPDAGsVSIGEDGTVSATYSNGQTVELGQ 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512565473  160 VKLATPAEDAALVRGNDGLFRT--GNGEPL----PNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQ 224
Cdd:TIGR03506 161 IALANFPNPDGLRKEGGNLYSAtpGSGAALvgapGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-241 1.21e-21

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 85.40  E-value: 1.21e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512565473  169 AALVRGNDGLFRTGNGEP-LPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKTASQL 241
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-245 1.46e-124

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 353.28  E-value: 1.46e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKTGNQLP---VAV 157
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGD-GGPITIPPGAKVTIGADGTISIVPAGGPPnalAEV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 158 GRVKLATPaEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKT 237
Cdd:COG4787  160 GRLKLVNP-DPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQA 238


                 ....*...
gi 512565473 238 ASQLLSMN 245
Cdd:COG4787  239 ANQLLRLS 246
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-245 5.28e-102

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 296.38  E-value: 5.28e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKT---GNQLPVAV 157
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGD-GGPIAVPPGAKITIGADGTISALPpgdPPNAVAEV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 158 GRVKLATPaEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKT 237
Cdd:PRK12640 160 GRLKLVNP-PAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQA 238


                 ....*...
gi 512565473 238 ASQLLSMN 245
Cdd:PRK12640 239 ANQLLRMS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-224 3.58e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 204.79  E-value: 3.58e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473    3 RIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAG--TRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSgqVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPEST-ISLGSDGTLTAKTGNQLPVAVGR 159
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGGGPITLPPDAGsVSIGEDGTVSATYSNGQTVELGQ 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512565473  160 VKLATPAEDAALVRGNDGLFRT--GNGEPL----PNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQ 224
Cdd:TIGR03506 161 IALANFPNPDGLRKEGGNLYSAtpGSGAALvgapGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-243 9.60e-58

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 184.25  E-value: 9.60e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   5 IYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVP---LQGSGAGTRVFALEATSGYVD------------TPG 69
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLyqlIRRPGAPSSQGTQTPVGLQLGtgvrvaatqtdfTQG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  70 PTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLsDGGGPIDIPPEST-ISLGSDGTLTAK 148
Cdd:COG4786   81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPVL-PENGPITIPEDATsITISEDGTVSVT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 149 TGNQLPVAVGRVKLATPAEDAALVRGNDGLFRTGNGEPLP------NDENARLLSGAIEGSNVNSVETMVGMIAAARQFE 222
Cdd:COG4786  160 LADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPivgtpgEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYE 239

                        250       260
                 ....*....|....*....|.
gi 512565473 223 TQMRLLQTAETNDKTASQLLS 243
Cdd:COG4786  240 ANSKVIQTADEMLGKANNLRG 260
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-245 4.97e-42

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 143.54  E-value: 4.97e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVP-LQGSGAGTRVFALEAtsgYVDTPGPTQRTGRALD 79
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFILAIQNHnVKNLYNSDKKITKEY---YNLSPGTLRYTGRNLD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  80 AMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGgpIDIPPESTISLGSDGTLTAKTGNQLPV---A 156
Cdd:PRK12641  78 LFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGN--IIIPKNINLKISSNGVITSIKNNHKHIvetK 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 157 VGRVKLAT-PAEDaaLVRGNDGLF--------RTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRL 227
Cdd:PRK12641 156 IGSLKLVQlPSQD--LIQKENGLFylkknneiNKKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKI 233

                        250
                 ....*....|....*...
gi 512565473 228 LQTAETNDKTASQLLSMN 245
Cdd:PRK12641 234 ISMCDQNTEYANQLININ 251
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 5-242 5.46e-38

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 133.25  E-value: 5.46e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473    5 IYTSMTGANAAAQRQSVLAHNLANAGTNGF---RAEMST--FRSVPLQGS---------------GAGTRVFALEAtsgy 64
Cdd:TIGR02488   2 LWTAATGMNAQQTNMDVISNNLANVNTTGFkkdRAEFEDllYQTERQPGAqsseqqtilpvgvqvGLGVRVVATQK---- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   65 VDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSdgggPIDIPPEST-ISLGSDG 143
Cdd:TIGR02488  78 LFTQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQP----EITIPENATsITVGSDG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  144 TLTAKTGNQL-PVAVGRVKLATPAEDAALVRGNDGLFR--TGNGEP---LPNDENA-RLLSGAIEGSNVNSVETMVGMIA 216
Cdd:TIGR02488 154 EVSVRQGGQTePQEVGQITLATFINPAGLEAVGENLFRetPASGPPqigTPGLDGFgKLRQGFLEASNVNVVQEMVDMIT 233

                         250       260
                  ....*....|....*....|....*.
gi 512565473  217 AARQFETQMRLLQTAETNDKTASQLL 242
Cdd:TIGR02488 234 AQRAYEMNSKAIQASDQMLQTVSQLL 259
flgF PRK12689
flagellar basal-body rod protein FlgF;
15-243 7.39e-38

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 132.95  E-value: 7.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  15 AAQRQ-SVLAHNLANAGTNGFRAEMSTFRSVPLQGS------GAGTRVFALEATSGYVD-TPGPTQRTGRALDAMAMGRA 86
Cdd:PRK12689  14 ALERQlDVVANNVANVNTNGFKARSSLFQEYLMPGAhednfqRPDRRVSYVQDRGTPLDlSQGPLEQTKNPLDVAIDGDA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  87 WFAVQGLDGqEAYTRNGVFEVSPEGQLVNSNGQAVLSDgGGPIDI-PPESTISLGSDGTLTAKTGNQLPVAV-GRVKLAT 164
Cdd:PRK12689  94 FLAVQTPQG-ERYTRDGALEINAQGQLVTSDGYPVLGT-GGPITFqPTDTGIAISPDGTVSVNEGTATTDSIrGKLRLVT 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512565473 165 PAEDAALVRGNDGLFRTGNGePLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKTASQLLS 243
Cdd:PRK12689 172 FANPQALKKEGANLYAATAP-ARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERLA 249
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-242 3.07e-36

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 128.83  E-value: 3.07e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGF---RAEMS-----TFRSVPLQGS-----------GAGTRVFALEAt 61
Cdd:PRK12693   1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFkksRAVFEdllyqTIRQPGAQSSqnttlpsglqvGTGVRPVATQK- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  62 sgyVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDgggpIDIPPEST-ISLG 140
Cdd:PRK12693  80 ---IFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPE----ITIPENATsITIG 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 141 SDGTLTAKT-GNQLPVAVGRVKLATPAEDAALVRGNDGLFR--TGNGEPL---PNDENARLLS-GAIEGSNVNSVETMVG 213
Cdd:PRK12693 153 TDGTVSVTQaGQAAPQVVGQITLTDFINPAGLESIGENLYLetAASGAPIegtPGLNGLGTLRqGFLETSNVNVVEELVN 232

                        250       260
                 ....*....|....*....|....*....
gi 512565473 214 MIAAARQFETQMRLLQTAETNDKTASQLL 242
Cdd:PRK12693 233 MITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgF PRK12690
flagellar hook-basal body complex protein;
1-222 2.23e-35

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 125.95  E-value: 2.23e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTF---------RSVPLQGSGAGTRVFALEatsgyvdtPGPT 71
Cdd:PRK12690   1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFseyvksldsGEASLSMARASGRQTDLE--------QGGL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  72 QRTGRALDAMAMGRAWFAVQGLDGqEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPEST-ISLGSDGTLTAKtG 150
Cdd:PRK12690  73 TQTGGQFDFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELVDPDGNRLLDAGGAPIFIPPDARsVAVGADGTLSAD-G 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512565473 151 NQLpvavGRVKLATPAEDAALVRGNDGLFRTGNG-EPLpndENARLLSGAIEGSNVNSVETMVGMIAAARQFE 222
Cdd:PRK12690 151 QPL----GQIGLYQPTDPLGLRREGGTRFRAEGGvEPA---EGARLLQGFLEGSNVNPVSEIARMIEVQRAYE 216
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-205 8.70e-35

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 123.80  E-value: 8.70e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLvNSNGQAVLSDgGGPIDIPPESTISLGSDGTLTAKTGNQLP---VAV 157
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGD-NGPIDVPPQAAVTIAADGTISALNAGDSPntiAQL 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 512565473 158 GRVKlATPAEDAALVRGNDGLF------RTGNGEPLPNDENARllSGAIEGSNV 205
Cdd:PRK12643 159 GQIK-RVQATAGEMMHGDDGLFhltpetQQARGAQLPNDPLVK--PGEREHQWL 209
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-242 1.29e-34

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 124.01  E-value: 1.29e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVpLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDA 80
Cdd:PRK12642   1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTV-VSDTASKKVAFVSQGKSYLSTEAGPLTKTGNPLDF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  81 MAMGRAWFAVQGLDGQeAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPES-TISLGSDGTLTaKTGNQlpvaVGR 159
Cdd:PRK12642  80 AVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELVSVTGYPVLDAGGAPIQLNPGGgEPTIGADGAIY-QNGVQ----VGA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 160 VKLATPAEDAALVR-GNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKTA 238
Cdd:PRK12642 154 IGLFEIDADAGLLRyGNSGVIPDKPPQPVVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESVSSLMRQSESSVSEA 233


                 ....
gi 512565473 239 SQLL 242
Cdd:PRK12642 234 IKTL 237
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-232 9.45e-30

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 111.77  E-value: 9.45e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFR---SVPLQGSGAGT--------RVFALEATSGYVD--- 66
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKdmvSQTISGASGPTanrggvnsKQVGLGSQLGAIDtih 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  67 TPGPTQRTGRALDAMAMGRAWFAVQGLDGQeAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPE-STISLGSDGTL 145
Cdd:PRK12636  81 TQGSLQTTGRPLDLAISGDGFFRVGDGDNT-AYTRAGNFYLDNEGNIVNADGLYLLGMNGGRIQIPTDaQSFSIGADGTV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 146 T-AKTGNQLPVAvGRVKLATPAEDAALVRGNDGLFR----TGNGEPLPNDEN--ARLLSGAIEGSNVNSVETMVGMIAAA 218
Cdd:PRK12636 160 SyVDAGGELQTA-GQIGLATFANPDGLEKAGDNLYRetlnSGTPSAVVPGEGgtGKIVSGALEMSNVDLAEEFTEMIVAQ 238

                        250
                 ....*....|....
gi 512565473 219 RQFETQMRLLQTAE 232
Cdd:PRK12636 239 RGFQANTRIITTSD 252
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-241 1.99e-28

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 108.36  E-value: 1.99e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGF---RAEMS--TFRSVPLQGS--------------GAGTRVfaleAT 61
Cdd:PRK12816   1 MMRSLWTAASGMNAQQFNIDTIANNLANVNTTGFkkiRAEFEdlIYQTQRRAGTpatedtvtplgvqvGHGVKV----AA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  62 SGYVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSdgggPIDIPP---ESTIS 138
Cdd:PRK12816  77 TQRLFEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLLP----EIIFPEnyiLNSIT 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 139 LGSDGTLTAKTGNQL-PVAVGRVKLATPAEDAALVRGNDGLFR--TGNGEPLPN----DENARLLSGAIEGSNVNSVETM 211
Cdd:PRK12816 153 ISEEGIVSVKVGEDNdPIELGQIELYRFVNPAGLSAIGKNLFKetIASGQEIPGipgsEGFGRVLQGFLEMSNVSIVEEM 232

                        250       260       270
                 ....*....|....*....|....*....|
gi 512565473 212 VGMIAAARQFETQMRLLQTAETNDKTASQL 241
Cdd:PRK12816 233 VTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 1-232 4.92e-27

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 104.77  E-value: 4.92e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTF----------RSVPLQG-----SGAGTRvfaleATSGYV 65
Cdd:PRK12817   1 MLRAFWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFsdlvyetldrKGYPTNDkpeiiTGTGVK-----ATNWIR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  66 DTP-GPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAV---LSDGGGPIDIPPE---STIS 138
Cdd:PRK12817  76 DNQqGNLLTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRLeiqLEAGVGINNRNTGfdsNNFT 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 139 LGSDGTLTAKTGNQLPVAVGRVKLATPAEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSVETMVGMIAAA 218
Cdd:PRK12817 156 VDEDGGISVKNVDGQNKKVGKINIYNAVGNDAFISIGDNLYVPSDGVQVFLNNDVDILQGYLENSNVDLGKEMTDMIITQ 235

                        250
                 ....*....|....
gi 512565473 219 RQFETQMRLLQTAE 232
Cdd:PRK12817 236 RAFQLSSKGIKTAD 249
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 129-222 3.00e-25

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 95.00  E-value: 3.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  129 IDIPPESTISLGSDGTLTAKTgnqlpVAVGRVKLATPAEDAALVRGNDGLFRTGNGEPLPNDENARLLSGAIEGSNVNSV 208
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQDG-----EEVGRLGLVNFDNPNQLQREGDGLFRATGGGPAPADSNVRVVQGYLEGSNVNAV 75

                          90
                  ....*....|....
gi 512565473  209 ETMVGMIAAARQFE 222
Cdd:TIGR02490  76 SEMVDMIEAQRAYE 89
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-241 1.21e-24

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 98.23  E-value: 1.21e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAE---MSTFRSVPLQGS----------------GAGTRVFalEAT 61
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDnlaFKSFEDVLIENYdkkvgnknvkniigglSMGSKID--EVN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  62 SGYvdTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLsdgGGPIDIPPESTISLGS 141
Cdd:PRK12818  79 TLF--TQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVL---GRNNATGAREPINVGN 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 142 DGTLTAKTGNQLPVAVGRVKLATP--AEDAALVRGNDGLFrTGNGEPLPNDENARllSGAIEGSNVNSVETMVGMIAAAR 219
Cdd:PRK12818 154 GKFSTDADGNISLDGNASYKFNVAdfNDYNSLKKIGDNLY-TGNNPQNINGAIVR--QNSLEKSNVNVTNEMVNMMTTMR 230

                        250       260
                 ....*....|....*....|...
gi 512565473 220 QFETQMRLLQTA-ETNDKTASQL 241
Cdd:PRK12818 231 SFETNQKIVQSIdETLGKAVNEV 253
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 3-240 2.88e-22

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 92.22  E-value: 2.88e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   3 RIIYTSMTGANAAAQRQSVLAHNLANAGTNGF---RAEMSTF-------RSVPLQ-GSGA---------GTRVFALEAts 62
Cdd:PRK12692   2 RALAIAATGMSAQQLNLEVIANNIANLNTTGFkgaRAEFTDLlyqaerqQGVPNQaGQEAvpegamlglGVRAAAIRN-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  63 gyVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVlsdggGPIDIPPEST--ISLG 140
Cdd:PRK12692  80 --LHRQGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAV-----DPAILIPQNTtqVTIN 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 141 SDGTLTAKT-GNQLPVAVGRVKLATPAEDAALVRGNDGLFR--TGNGEP---LPNDEN-ARLLSGAIEGSNVNSVETMVG 213
Cdd:PRK12692 153 ESGQVFAKIdGQVAPQNLGQLTLANFANESGLEPLGNGLYRetPASGAPvvgNPGDVGfGKIQQGYLEGSNVDPVKEITS 232

                        250       260
                 ....*....|....*....|....*..
gi 512565473 214 MIAAARQFETQMRLLQTAETNDKTASQ 240
Cdd:PRK12692 233 LITAQRAFEMNSKVIQAADEMAGTVSK 259
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-241 1.21e-21

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 85.40  E-value: 1.21e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512565473  169 AALVRGNDGLFRTGNGEP-LPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKTASQL 241
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-163 5.02e-21

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 90.62  E-value: 5.02e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGS--------GAGTRVfaleATSGYVDTPGPTQ 72
Cdd:COG1749    1 MMMSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLsganptqvGGGVRV----ASVAQIFTQGSLQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  73 RTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLsdgGGPIDIPPESTISLGSDGTLTAKTGNQ 152
Cdd:COG1749   77 STGNALDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQ---GYPADADGTIPDTGGGLEPIQIPTGQL 153

                        170
                 ....*....|.
gi 512565473 153 LPVAVGRVKLA 163
Cdd:COG1749  154 PAKATTKVTLG 164
flgE PRK06803
flagellar basal body protein FlaE;
8-118 5.03e-14

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 70.57  E-value: 5.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   8 SMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVfalEATSGYVDTPGPTQRTGRALDAMAMGRAW 87
Cdd:PRK06803   6 ALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEV---SSVSQNFSKDGSLTYTGRGLDLAISGGGF 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 512565473  88 FAVQGLDGQEAYTRNGVFEVSPEGQLVNSNG 118
Cdd:PRK06803  83 FVLKESDGDTAYTRAGMFRSDVDGYLTDPQG 113
flgE PRK05682
flagellar hook protein FlgE; Validated
 6-128 4.41e-12

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 64.86  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   6 YTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGS-------GAGTRVfaleATSGYVDTPGPTQRTGRAL 78
Cdd:PRK05682   4 NTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAgtnptqvGSGVKV----AGVAQQFSQGSITSTGNSL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 512565473  79 DaMAM-GRAWFAVQGlDGQEAYTRNGVFEVSPEGQLVNSNGQ-----AVLSDGGGP 128
Cdd:PRK05682  80 D-LAIsGNGFFVVSN-GGNGFYTRAGAFKLDKNGYLVNAAGYylqgyPADADGGTP 133
flgG PRK12819
flagellar basal-body rod protein FlgG;
5-242 4.63e-12

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 63.74  E-value: 4.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   5 IYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFR-----SVPLQGSGAGTRV----FALEATSGYVD-TPGPTQRT 74
Cdd:PRK12819   4 LYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKvfdvqDTYRRGDGAVTNIgsvdYAVVPAATHVNlVQGNIQMT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  75 GRA----LDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPESTISLGSDGTLTAKTG 150
Cdd:PRK12819  84 NSDtdffLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDAVT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 151 NQLPVAVGRVKLATPAEDAALVRGNDGL-FRTGNGEPLPNDENArLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQ 229
Cdd:PRK12819 164 QNNIARLQTKTVSAEQNDRLVQRENKSFtLAEGNIANLPNGQGI-VKNGMLENSNVDMTKEMADLMTDQRMIQASQRVMT 242

                        250
                 ....*....|....
gi 512565473 230 TAE-TNDKTASQLL 242
Cdd:PRK12819 243 SFDkIYEKEANEIL 256
flgE PRK12637
flagellar hook protein FlgE; Provisional
 8-162 1.03e-05

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 45.90  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473   8 SMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGS-GAGTRVFALEATSgyvdTPGPTQRTGRALD-AMAMGR 85
Cdd:PRK12637   6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRvGLGVKVSAINQRF----TVGNISTTGGEYDmAIDGGK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473  86 AWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVL-----SDGGGPID-------IPPESTISLGSDGTLTAKTG--- 150
Cdd:PRK12637  82 GFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTgypagGVGAQPVDlqlpqgnIAPQATSTAGLQTNLNANAKvid 161

                        170
                 ....*....|...
gi 512565473 151 -NQLPVAVGRVKL 162
Cdd:PRK12637 162 pNDTPAVDGTVEL 174
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-62 2.77e-05

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 42.59  E-value: 2.77e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512565473   1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATS 62
Cdd:COG1815    5 FDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSAGLALATTN 66
flgE PRK05682
flagellar hook protein FlgE; Validated
 135-230 1.39e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 42.52  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512565473 135 STISLGSDGTLTAKTGNQLPVAVGRVKLATPAEDAALVRGNDGLFRTGN--GEPL---PNDENA-RLLSGAIEGSNVNSV 208
Cdd:PRK05682 294 TGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAasGVALigtAGSGGFgTIQSGALESSNVDLS 373

                         90       100
                 ....*....|....*....|....*....
gi 512565473 209 ETMVGMI-------AAARQFETQMRLLQT 230
Cdd:PRK05682 374 TELVNMIvaqrnyqANAKTIKTQDQLLQT 402
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 2-44 1.13e-03

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 38.14  E-value: 1.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 512565473    2 DRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSV 44
Cdd:TIGR01396   2 SNAFGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAE 44
flgB PRK12627
FlgB family protein;
5-71 3.72e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 36.63  E-value: 3.72e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512565473   5 IYTSMtgANAAAQRQSVLAHNLANAGTNGFRAE-----MSTFRSVPLQGSGAgTRVFALEATSGYVDTPGPT 71
Cdd:PRK12627  10 MASAM--ARHAGERQAVVARNVANADTPGYRARdladfAESYRAEGTTGMRA-TRPGHLNGAAAGAADPVVT 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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