MULTISPECIES: helix-turn-helix domain-containing protein [Enterobacteriaceae]
Protein Classification
helix-turn-helix domain-containing protein( domain architecture ID 10019969)
helix-turn-helix (HTH) domain-containing protein that may function in DNA binding, similar to Saccharopolyspora erythraea excisionase, a non-classical excisionase
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
84-131 | 7.94e-13 | ||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] : Pssm-ID: 200128 Cd Length: 49 Bit Score: 59.54 E-value: 7.94e-13
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| Name | Accession | Description | Interval | E-value | ||
| excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
84-131 | 7.94e-13 | ||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 59.54 E-value: 7.94e-13
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| HTH_17 | pfam12728 | Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. |
84-132 | 8.68e-11 | ||
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. Pssm-ID: 463684 [Multi-domain] Cd Length: 51 Bit Score: 54.00 E-value: 8.68e-11
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| HTH_MerR-trunc | cd04762 | Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family ... |
84-129 | 7.23e-05 | ||
Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles. Pssm-ID: 133390 [Multi-domain] Cd Length: 49 Bit Score: 38.33 E-value: 7.23e-05
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| Name | Accession | Description | Interval | E-value | ||
| excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
84-131 | 7.94e-13 | ||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 59.54 E-value: 7.94e-13
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| HTH_17 | pfam12728 | Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. |
84-132 | 8.68e-11 | ||
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. Pssm-ID: 463684 [Multi-domain] Cd Length: 51 Bit Score: 54.00 E-value: 8.68e-11
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| HTH_MerR-trunc | cd04762 | Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family ... |
84-129 | 7.23e-05 | ||
Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles. Pssm-ID: 133390 [Multi-domain] Cd Length: 49 Bit Score: 38.33 E-value: 7.23e-05
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