NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|514429657|ref|WP_016570095|]
View 

MULTISPECIES: DUF4222 domain-containing protein [Enterobacteriaceae]

Protein Classification

DUF4222 domain-containing protein( domain architecture ID 10623526)

DUF4222 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4222 pfam13973
Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For ...
 4-54 8.29e-11

Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.


:

Pssm-ID: 372855  Cd Length: 53  Bit Score: 50.68  E-value: 8.29e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 514429657   4 LNRWFRDGRGLYVHVIRWEpeTQRVIYLRKDYPHECFSPLWKFKRDFVECE 54
Cdd:pfam13973  5 PGDIYRDKHGVTVTVISVD--FNRVTFRRDGYEHPCVAPLYRFNKEFTRVD 53
 
Name Accession Description Interval E-value
DUF4222 pfam13973
Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For ...
 4-54 8.29e-11

Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.


Pssm-ID: 372855  Cd Length: 53  Bit Score: 50.68  E-value: 8.29e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 514429657   4 LNRWFRDGRGLYVHVIRWEpeTQRVIYLRKDYPHECFSPLWKFKRDFVECE 54
Cdd:pfam13973  5 PGDIYRDKHGVTVTVISVD--FNRVTFRRDGYEHPCVAPLYRFNKEFTRVD 53
 
Name Accession Description Interval E-value
DUF4222 pfam13973
Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For ...
 4-54 8.29e-11

Domain of unknown function (DUF4222); This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.


Pssm-ID: 372855  Cd Length: 53  Bit Score: 50.68  E-value: 8.29e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 514429657   4 LNRWFRDGRGLYVHVIRWEpeTQRVIYLRKDYPHECFSPLWKFKRDFVECE 54
Cdd:pfam13973  5 PGDIYRDKHGVTVTVISVD--FNRVTFRRDGYEHPCVAPLYRFNKEFTRVD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH