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Conserved domains on  [gi|515410900|ref|WP_016899910|]
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MULTISPECIES: YcfL family protein [Pseudoalteromonas]

Protein Classification

YcfL family protein( domain architecture ID 11165433)

YcfL family protein is a DUF1425 domain-containing protein; similar to Escherichia coli protein YcfL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1425 pfam07233
Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial ...
 45-130 7.27e-32

Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.


:

Pssm-ID: 429361  Cd Length: 87  Bit Score: 108.46  E-value: 7.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900   45 LAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYLQYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPSPNAVT 124
Cdd:pfam07233   2 LAAGISVEDPSTRRVGGLLRASVVLSNKSSTDVTLQYRFYWYDADGLEVEPEESPWRSITLHGKETVTLQAVAPNPNATQ 81


                  ....*.
gi 515410900  125 FSLAVR 130
Cdd:pfam07233  82 FRLYVR 87
 
Name Accession Description Interval E-value
DUF1425 pfam07233
Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial ...
 45-130 7.27e-32

Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.


Pssm-ID: 429361  Cd Length: 87  Bit Score: 108.46  E-value: 7.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900   45 LAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYLQYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPSPNAVT 124
Cdd:pfam07233   2 LAAGISVEDPSTRRVGGLLRASVVLSNKSSTDVTLQYRFYWYDADGLEVEPEESPWRSITLHGKETVTLQAVAPNPNATQ 81


                  ....*.
gi 515410900  125 FSLAVR 130
Cdd:pfam07233  82 FRLYVR 87
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-133 4.85e-30

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 105.07  E-value: 4.85e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900   1 MKYILP-IIALFMLSACSSRPvTSGIGVEQTtnaykEQLNVNNPQLAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYL 79
Cdd:COG5633    1 MKKLLIaLLAVLLLAGCSSSP-TSGIPVNSQ-----QPLVMESSVLAAGISAEKPTLSQVGGLLRAQATLSNKSNKPVTL 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 515410900  80 QYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPSPNAVTFSLAVREVS 133
Cdd:COG5633   75 QYRFYWYDKNGLEIHPEESPWRTLTLPGNQTVTIQSVAPNPEAKNYRLYLRLKR 128
DUF1425 cd09030
Putative periplasmic lipoprotein; This bacterial family of proteins contains members described ...
 40-130 2.91e-26

Putative periplasmic lipoprotein; This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.


Pssm-ID: 176923  Cd Length: 101  Bit Score: 94.68  E-value: 2.91e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900  40 VNNPQLAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYLQYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPS 119
Cdd:cd09030   11 VMDSSLAAGISVIEPRISRTNGLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAVAPN 90

                         90
                 ....*....|.
gi 515410900 120 PNAVTFSLAVR 130
Cdd:cd09030   91 PEAKDFRLYLR 101
 
Name Accession Description Interval E-value
DUF1425 pfam07233
Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial ...
 45-130 7.27e-32

Protein of unknown function (DUF1425); This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.


Pssm-ID: 429361  Cd Length: 87  Bit Score: 108.46  E-value: 7.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900   45 LAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYLQYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPSPNAVT 124
Cdd:pfam07233   2 LAAGISVEDPSTRRVGGLLRASVVLSNKSSTDVTLQYRFYWYDADGLEVEPEESPWRSITLHGKETVTLQAVAPNPNATQ 81


                  ....*.
gi 515410900  125 FSLAVR 130
Cdd:pfam07233  82 FRLYVR 87
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-133 4.85e-30

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 105.07  E-value: 4.85e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900   1 MKYILP-IIALFMLSACSSRPvTSGIGVEQTtnaykEQLNVNNPQLAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYL 79
Cdd:COG5633    1 MKKLLIaLLAVLLLAGCSSSP-TSGIPVNSQ-----QPLVMESSVLAAGISAEKPTLSQVGGLLRAQATLSNKSNKPVTL 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 515410900  80 QYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPSPNAVTFSLAVREVS 133
Cdd:COG5633   75 QYRFYWYDKNGLEIHPEESPWRTLTLPGNQTVTIQSVAPNPEAKNYRLYLRLKR 128
DUF1425 cd09030
Putative periplasmic lipoprotein; This bacterial family of proteins contains members described ...
 40-130 2.91e-26

Putative periplasmic lipoprotein; This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.


Pssm-ID: 176923  Cd Length: 101  Bit Score: 94.68  E-value: 2.91e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515410900  40 VNNPQLAKKLLISDVKTRQTNNLTDVVVTLASTYKKSQYLQYQFNWFDKDGFVIKGNHSPWQALTLFGFAKTQLAGLAPS 119
Cdd:cd09030   11 VMDSSLAAGISVIEPRISRTNGLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAVAPN 90

                         90
                 ....*....|.
gi 515410900 120 PNAVTFSLAVR 130
Cdd:cd09030   91 PEAKDFRLYLR 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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