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Conserved domains on  [gi|515411375|ref|WP_016900377|]
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MULTISPECIES: DUF2835 family protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2835 super family cl12746
Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. ...
 5-72 2.32e-22

Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. One member of this family is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).


The actual alignment was detected with superfamily member pfam11197:

Pssm-ID: 431718  Cd Length: 71  Bit Score: 81.01  E-value: 2.32e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515411375   5 YFYINLSYNECMDYYHGRYSSIQVTADSGKTIRFAAHYLRPFMSSLGIRGRFRLILSNENKFIRLERV 72
Cdd:pfam11197  4 YFDLNISAEEFLRYYQGAASRVVVRARDGRRLQFPASHLRPFVTHDGVRGRFRLEFDEQGKFVSLERL 71
 
Name Accession Description Interval E-value
DUF2835 pfam11197
Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. ...
 5-72 2.32e-22

Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. One member of this family is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).


Pssm-ID: 431718  Cd Length: 71  Bit Score: 81.01  E-value: 2.32e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515411375   5 YFYINLSYNECMDYYHGRYSSIQVTADSGKTIRFAAHYLRPFMSSLGIRGRFRLILSNENKFIRLERV 72
Cdd:pfam11197  4 YFDLNISAEEFLRYYQGAASRVVVRARDGRRLQFPASHLRPFVTHDGVRGRFRLEFDEQGKFVSLERL 71
 
Name Accession Description Interval E-value
DUF2835 pfam11197
Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. ...
 5-72 2.32e-22

Protein of unknown function (DUF2835); This is a bacterial family of uncharacterized proteins. One member of this family is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).


Pssm-ID: 431718  Cd Length: 71  Bit Score: 81.01  E-value: 2.32e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515411375   5 YFYINLSYNECMDYYHGRYSSIQVTADSGKTIRFAAHYLRPFMSSLGIRGRFRLILSNENKFIRLERV 72
Cdd:pfam11197  4 YFDLNISAEEFLRYYQGAASRVVVRARDGRRLQFPASHLRPFVTHDGVRGRFRLEFDEQGKFVSLERL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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