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Conserved domains on  [gi|515494723|ref|WP_016927977|]
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MULTISPECIES: type V toxin-antitoxin system endoribonuclease antitoxin GhoS [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GhoS super family cl12641
Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT ...
 9-93 1.22e-19

Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT is inhibited by antitoxin GhoS, which specifically cleaves its mRNA.


The actual alignment was detected with superfamily member pfam11080:

Pssm-ID: 431644  Cd Length: 87  Bit Score: 76.03  E-value: 1.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515494723   9 FVVTFRYQEAGLTDLAKLTGQLTREGFVTSVTDENGVHHELGSNSFAFITVLDQEDVLRLAQGFGQLALGKQPEVAICSC 88
Cdd:pfam11080  3 YVVSVTFHEDYLTEINELNNHLTRMGFLLTLTDEEGIPHELGTNTFGLTSSQSAEEIKALIAGLAESALDKDFEINIMTW 82


                 ....*
gi 515494723  89 EDYLQ 93
Cdd:pfam11080 83 EEWFK 87
 
Name Accession Description Interval E-value
GhoS pfam11080
Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT ...
 9-93 1.22e-19

Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT is inhibited by antitoxin GhoS, which specifically cleaves its mRNA.


Pssm-ID: 431644  Cd Length: 87  Bit Score: 76.03  E-value: 1.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515494723   9 FVVTFRYQEAGLTDLAKLTGQLTREGFVTSVTDENGVHHELGSNSFAFITVLDQEDVLRLAQGFGQLALGKQPEVAICSC 88
Cdd:pfam11080  3 YVVSVTFHEDYLTEINELNNHLTRMGFLLTLTDEEGIPHELGTNTFGLTSSQSAEEIKALIAGLAESALDKDFEINIMTW 82


                 ....*
gi 515494723  89 EDYLQ 93
Cdd:pfam11080 83 EEWFK 87
 
Name Accession Description Interval E-value
GhoS pfam11080
Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT ...
 9-93 1.22e-19

Endoribonuclease GhoS; GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT is inhibited by antitoxin GhoS, which specifically cleaves its mRNA.


Pssm-ID: 431644  Cd Length: 87  Bit Score: 76.03  E-value: 1.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515494723   9 FVVTFRYQEAGLTDLAKLTGQLTREGFVTSVTDENGVHHELGSNSFAFITVLDQEDVLRLAQGFGQLALGKQPEVAICSC 88
Cdd:pfam11080  3 YVVSVTFHEDYLTEINELNNHLTRMGFLLTLTDEEGIPHELGTNTFGLTSSQSAEEIKALIAGLAESALDKDFEINIMTW 82


                 ....*
gi 515494723  89 EDYLQ 93
Cdd:pfam11080 83 EEWFK 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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