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MULTISPECIES: tRNA epoxyqueuosine(34) reductase QueG [Staphylococcus]
epoxyqueuosine reductase( domain architecture ID 11489053)
epoxyqueuosine reductase catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 | TIGR00276 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
10-342 | 0e+00 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] : Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 507.45 E-value: 0e+00
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
316-370 | 2.46e-03 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. : Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 36.55 E-value: 2.46e-03
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Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 | TIGR00276 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
10-342 | 0e+00 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 507.45 E-value: 0e+00
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QueG | COG1600 | Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ... |
2-346 | 1.79e-157 | ||||||
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441208 [Multi-domain] Cd Length: 345 Bit Score: 446.19 E-value: 1.79e-157
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QueG_DUF1730 | pfam08331 | Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in ... |
57-135 | 8.28e-25 | ||||||
Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in Epoxyqueuosine reductase QueG, an iron-sulfur cluster-binding protein, together with the 4Fe-4S binding domain (pfam00037). QueG catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). Pssm-ID: 462431 [Multi-domain] Cd Length: 77 Bit Score: 96.07 E-value: 8.28e-25
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DMSOR_beta_like | cd16373 | uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
190-273 | 4.84e-05 | ||||||
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system. Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 43.01 E-value: 4.84e-05
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
316-370 | 2.46e-03 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 36.55 E-value: 2.46e-03
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Name | Accession | Description | Interval | E-value | ||||||
TIGR00276 | TIGR00276 | epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there ... |
10-342 | 0e+00 | ||||||
epoxyqueuosine reductase; This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 272993 [Multi-domain] Cd Length: 337 Bit Score: 507.45 E-value: 0e+00
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QueG | COG1600 | Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ... |
2-346 | 1.79e-157 | ||||||
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441208 [Multi-domain] Cd Length: 345 Bit Score: 446.19 E-value: 1.79e-157
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QueG_DUF1730 | pfam08331 | Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in ... |
57-135 | 8.28e-25 | ||||||
Epoxyqueuosine reductase QueG, DUF1730; This domain of unknown function occurs in Epoxyqueuosine reductase QueG, an iron-sulfur cluster-binding protein, together with the 4Fe-4S binding domain (pfam00037). QueG catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). Pssm-ID: 462431 [Multi-domain] Cd Length: 77 Bit Score: 96.07 E-value: 8.28e-25
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Fer4_16 | pfam13484 | 4Fe-4S double cluster binding domain; |
188-250 | 2.95e-23 | ||||||
4Fe-4S double cluster binding domain; Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 91.78 E-value: 2.95e-23
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
299-362 | 3.15e-09 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 53.50 E-value: 3.15e-09
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RDH | TIGR02486 | reductive dehalogenase; This model represents a family of corrin and 8-iron Fe-S ... |
142-262 | 4.64e-09 | ||||||
reductive dehalogenase; This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene. Pssm-ID: 274158 Cd Length: 314 Bit Score: 57.06 E-value: 4.64e-09
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
299-370 | 9.36e-08 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 50.78 E-value: 9.36e-08
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
299-370 | 5.41e-07 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 48.47 E-value: 5.41e-07
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
299-370 | 1.14e-06 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 47.32 E-value: 1.14e-06
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DMSOR_beta_like | cd16373 | uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
190-273 | 4.84e-05 | ||||||
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system. Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 43.01 E-value: 4.84e-05
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
299-340 | 5.87e-05 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 41.17 E-value: 5.87e-05
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DsrA | COG2221 | Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ... |
186-248 | 1.83e-04 | ||||||
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism]; Pssm-ID: 441823 [Multi-domain] Cd Length: 69 Bit Score: 39.26 E-value: 1.83e-04
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HEAT | COG1413 | HEAT repeat [General function prediction only]; |
299-342 | 2.03e-04 | ||||||
HEAT repeat [General function prediction only]; Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 41.15 E-value: 2.03e-04
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NapH | COG0348 | Polyferredoxin NapH [Energy production and conversion]; |
186-250 | 2.47e-04 | ||||||
Polyferredoxin NapH [Energy production and conversion]; Pssm-ID: 440117 [Multi-domain] Cd Length: 263 Bit Score: 42.36 E-value: 2.47e-04
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activase_YjjW | TIGR04041 | glycine radical enzyme activase, YjjW family; Members of this family are radical SAM enzymes, ... |
186-250 | 3.72e-04 | ||||||
glycine radical enzyme activase, YjjW family; Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair] Pssm-ID: 274938 [Multi-domain] Cd Length: 276 Bit Score: 41.85 E-value: 3.72e-04
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COG2768 | COG2768 | Uncharacterized Fe-S cluster protein [Function unknown]; |
186-248 | 6.53e-04 | ||||||
Uncharacterized Fe-S cluster protein [Function unknown]; Pssm-ID: 442050 [Multi-domain] Cd Length: 74 Bit Score: 37.79 E-value: 6.53e-04
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Fer4_7 | pfam12838 | 4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
188-250 | 8.36e-04 | ||||||
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Pssm-ID: 463724 [Multi-domain] Cd Length: 51 Bit Score: 37.12 E-value: 8.36e-04
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IorA | COG4231 | TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ... |
186-248 | 1.07e-03 | ||||||
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion]; Pssm-ID: 443375 [Multi-domain] Cd Length: 76 Bit Score: 37.33 E-value: 1.07e-03
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COG1149 | COG1149 | MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ... |
186-250 | 1.55e-03 | ||||||
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only]; Pssm-ID: 440763 [Multi-domain] Cd Length: 68 Bit Score: 36.63 E-value: 1.55e-03
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RnfB | COG2878 | Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ... |
186-250 | 1.76e-03 | ||||||
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase Pssm-ID: 442125 [Multi-domain] Cd Length: 254 Bit Score: 39.59 E-value: 1.76e-03
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MtMvhB_like | cd10549 | Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
186-250 | 2.10e-03 | ||||||
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction. Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 37.76 E-value: 2.10e-03
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HEAT_2 | pfam13646 | HEAT repeats; This family includes multiple HEAT repeats. |
316-370 | 2.46e-03 | ||||||
HEAT repeats; This family includes multiple HEAT repeats. Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 36.55 E-value: 2.46e-03
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Fer4_9 | pfam13187 | 4Fe-4S dicluster domain; |
188-250 | 4.92e-03 | ||||||
4Fe-4S dicluster domain; Pssm-ID: 463801 [Multi-domain] Cd Length: 50 Bit Score: 34.84 E-value: 4.92e-03
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HEAT_EZ | pfam13513 | HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
299-342 | 5.43e-03 | ||||||
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 34.65 E-value: 5.43e-03
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HycB | COG1142 | Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion]; |
191-248 | 6.64e-03 | ||||||
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion]; Pssm-ID: 440757 [Multi-domain] Cd Length: 138 Bit Score: 36.56 E-value: 6.64e-03
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NuoI | COG1143 | Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ... |
186-248 | 8.93e-03 | ||||||
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase Pssm-ID: 440758 [Multi-domain] Cd Length: 66 Bit Score: 34.72 E-value: 8.93e-03
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Blast search parameters | ||||
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