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Conserved domains on  [gi|515605116|ref|WP_017037716|]
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MULTISPECIES: IS66 family insertion sequence element accessory protein TnpB [Vibrio]

Protein Classification

IS66 family insertion sequence element accessory protein TnpB( domain architecture ID 16678254)

IS66 family insertion sequence element accessory protein TnpB is part of a transposase complex that binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803|GO:0003677|GO:0006313|GO:0032196
PubMed:  30454069|11418571|20215432|11418571|20615441|17165262|20079432

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS66_TnpB NF033819
IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion ...
 10-100 4.04e-42

IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.


:

Pssm-ID: 411392  Cd Length: 90  Bit Score: 133.38  E-value: 4.04e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116  10 IYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEkNQVFTL 89
Cdd:NF033819   1 IYLATGPTDMRKGIDGLAALVQEVLGLDPFSGHLFVFRNRRRDRLKILYWDGSGFCLYYKRLEKGRFRWPRAA-DGVVAL 79

                         90
                 ....*....|.
gi 515605116  90 TQFELDRLLSG 100
Cdd:NF033819  80 TPAQLAWLLEG 90
 
Name Accession Description Interval E-value
IS66_TnpB NF033819
IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion ...
 10-100 4.04e-42

IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.


Pssm-ID: 411392  Cd Length: 90  Bit Score: 133.38  E-value: 4.04e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116  10 IYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEkNQVFTL 89
Cdd:NF033819   1 IYLATGPTDMRKGIDGLAALVQEVLGLDPFSGHLFVFRNRRRDRLKILYWDGSGFCLYYKRLEKGRFRWPRAA-DGVVAL 79

                         90
                 ....*....|.
gi 515605116  90 TQFELDRLLSG 100
Cdd:NF033819  80 TPAQLAWLLEG 90
TnpB_IS66 pfam05717
IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The ...
 13-101 2.74e-40

IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.


Pssm-ID: 461723  Cd Length: 96  Bit Score: 129.13  E-value: 2.74e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116   13 YRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEKNQVFTLTQF 92
Cdd:pfam05717   1 ATGPTDMRKGIDGLAALVQEALGLDPFSGHLFVFRNRRRDRIKILYWDGDGFWLYYKRLERGRFVWPRRAGDGVVELTAA 80


                  ....*....
gi 515605116   93 ELDRLLSGF 101
Cdd:pfam05717  81 QLSWLLEGI 89
COG3436 COG3436
Transposase [Mobilome: prophages, transposons];
15-96 3.77e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442662 [Multi-domain]  Cd Length: 416  Bit Score: 44.25  E-value: 3.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116  15 ESVDFRKsINGLAAIIENDT---DLPlgSGALFLFTNkQRDKIKVLYWDKTGfaLWY-----KRLEK------------- 73
Cdd:COG3436   82 EPTDMRK-IDGLAAIGEEVSeelDLD--PGALFVFRN-RRDKYKCLYCDGTG--LVYapapaKRLEKglagpgllahilv 155

                         90       100
                 ....*....|....*....|....*
gi 515605116  74 AKYK--WPSKEKNQVFTLTQFELDR 96
Cdd:COG3436  156 SKFVdhLPLYRQEEIFARLGVELSR 180
 
Name Accession Description Interval E-value
IS66_TnpB NF033819
IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion ...
 10-100 4.04e-42

IS66 family insertion sequence element accessory protein TnpB; The IS66 family insertion sequence element encodes a DDE transposase TnpC, and two accessory proteins, TnpA and TnpB. It has been assumed that the TnpA, TnpB, and TnpC proteins are produced independently in appropriate amounts and form a complex, which acts as a transposase to promote the transposition of an IS66 family element.


Pssm-ID: 411392  Cd Length: 90  Bit Score: 133.38  E-value: 4.04e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116  10 IYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEkNQVFTL 89
Cdd:NF033819   1 IYLATGPTDMRKGIDGLAALVQEVLGLDPFSGHLFVFRNRRRDRLKILYWDGSGFCLYYKRLEKGRFRWPRAA-DGVVAL 79

                         90
                 ....*....|.
gi 515605116  90 TQFELDRLLSG 100
Cdd:NF033819  80 TPAQLAWLLEG 90
TnpB_IS66 pfam05717
IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The ...
 13-101 2.74e-40

IS66 Orf2 like protein; This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.


Pssm-ID: 461723  Cd Length: 96  Bit Score: 129.13  E-value: 2.74e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116   13 YRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEKNQVFTLTQF 92
Cdd:pfam05717   1 ATGPTDMRKGIDGLAALVQEALGLDPFSGHLFVFRNRRRDRIKILYWDGDGFWLYYKRLERGRFVWPRRAGDGVVELTAA 80


                  ....*....
gi 515605116   93 ELDRLLSGF 101
Cdd:pfam05717  81 QLSWLLEGI 89
COG3436 COG3436
Transposase [Mobilome: prophages, transposons];
15-96 3.77e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442662 [Multi-domain]  Cd Length: 416  Bit Score: 44.25  E-value: 3.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515605116  15 ESVDFRKsINGLAAIIENDT---DLPlgSGALFLFTNkQRDKIKVLYWDKTGfaLWY-----KRLEK------------- 73
Cdd:COG3436   82 EPTDMRK-IDGLAAIGEEVSeelDLD--PGALFVFRN-RRDKYKCLYCDGTG--LVYapapaKRLEKglagpgllahilv 155

                         90       100
                 ....*....|....*....|....*
gi 515605116  74 AKYK--WPSKEKNQVFTLTQFELDR 96
Cdd:COG3436  156 SKFVdhLPLYRQEEIFARLGVELSR 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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