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Conserved domains on  [gi|515609505|ref|WP_017042105|]
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site-specific DNA-methyltransferase [Vibrio ordalii]

Protein Classification

DNA-methyltransferase( domain architecture ID 10002921)

DNA methyltransferase catalyzes specific methylation on cytosine or adenine on both strands and protects the DNA from cleavage by endonuclease; belongs to the class I SAM-dependent methyltransferase superfamily

CATH:  2.20.25.110
SCOP:  3000118

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
12-348 3.92e-56

DNA modification methylase [Replication, recombination and repair];


:

Pssm-ID: 440623  Cd Length: 236  Bit Score: 182.82  E-value: 3.92e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  12 TLVNADCLPYLKTLADNSVDLILTDPPYFQVKRNAW----DNQWPDVQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKLA 87
Cdd:COG0863    1 RLICGDCLEVLKELPDESVDLIVTDPPYNLGKKYGLgrreIGNELSFEEYLEFLREWLAECYRVLKPGGSLYVNIGDRYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  88 SDT-EILIRNRFEVFNHIIWAKPSGpwrrMHKPDLRMFFPATERIIFaghynaegYAKGcsgyttqcsqlKKQVFKPlid 166
Cdd:COG0863   81 SRLiAALRDAGFKLRNEIIWRKPNG----VPGPSKRRFRNSHEYILW--------FTKG-----------KKYTFNV--- 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 167 yfmDARKqlgvtakeineatgtqmcshwfsesqwalpnedqylklqrlfdkkrgelvkshhelvgeynylnsqyqtlvre 246
Cdd:COG0863  135 ---DAVK------------------------------------------------------------------------- 138

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 247 fdglkaeyehlrrpfSVTSDVPYTDVWQFAPVQY-YPGKHPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLAL 325
Cdd:COG0863  139 ---------------SIEDGRNPSDVWDIPGVTPkERKGHPTQKPVELLERLILASSNPGDIVLDPFAGSGTTLVAAERL 203

                        330       340
                 ....*....|....*....|...
gi 515609505 326 NRRFIGIEMEEETFDLTLNAMRE 348
Cdd:COG0863  204 GRRFIGIEIDPEYVEVARRRLEE 226
 
Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
12-348 3.92e-56

DNA modification methylase [Replication, recombination and repair];


Pssm-ID: 440623  Cd Length: 236  Bit Score: 182.82  E-value: 3.92e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  12 TLVNADCLPYLKTLADNSVDLILTDPPYFQVKRNAW----DNQWPDVQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKLA 87
Cdd:COG0863    1 RLICGDCLEVLKELPDESVDLIVTDPPYNLGKKYGLgrreIGNELSFEEYLEFLREWLAECYRVLKPGGSLYVNIGDRYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  88 SDT-EILIRNRFEVFNHIIWAKPSGpwrrMHKPDLRMFFPATERIIFaghynaegYAKGcsgyttqcsqlKKQVFKPlid 166
Cdd:COG0863   81 SRLiAALRDAGFKLRNEIIWRKPNG----VPGPSKRRFRNSHEYILW--------FTKG-----------KKYTFNV--- 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 167 yfmDARKqlgvtakeineatgtqmcshwfsesqwalpnedqylklqrlfdkkrgelvkshhelvgeynylnsqyqtlvre 246
Cdd:COG0863  135 ---DAVK------------------------------------------------------------------------- 138

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 247 fdglkaeyehlrrpfSVTSDVPYTDVWQFAPVQY-YPGKHPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLAL 325
Cdd:COG0863  139 ---------------SIEDGRNPSDVWDIPGVTPkERKGHPTQKPVELLERLILASSNPGDIVLDPFAGSGTTLVAAERL 203

                        330       340
                 ....*....|....*....|...
gi 515609505 326 NRRFIGIEMEEETFDLTLNAMRE 348
Cdd:COG0863  204 GRRFIGIEIDPEYVEVARRRLEE 226
N6_N4_Mtase pfam01555
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 ...
 30-342 1.85e-41

DNA methylase; Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.


Pssm-ID: 396230 [Multi-domain]  Cd Length: 221  Bit Score: 144.46  E-value: 1.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505   30 VDLILTDPPYFQVKRNAWDNQWPDVQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKLASDTEILIRNRFEVF---NHIIW 106
Cdd:pfam01555   1 VDLIVTDPPYNLGKDYGQWDDKDSIEEYLEWLEEWLKEVRRVLKPGGSIFINIGDSNIKSLKALALEILGIFkllNDIIW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  107 AKPSGpwrrmhkpdlrMFFPATERiifaghynaegyakgcsgyttqcsqlkkqvFKPLIDYFMdarkqlgvtakeineat 186
Cdd:pfam01555  81 RKPNG-----------MPNSNGER------------------------------FTPAHEYIL----------------- 102

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  187 gtqmcshWFSESQWALPNEDQYLKLQrlFDKKRGELVKShhelvgeynylnsqyqtlvrefdglkaeyehlrrpfSVTSD 266
Cdd:pfam01555 103 -------WFSKTKKYKTFNYDAIKVP--YDEKDKLKKRG------------------------------------SEPNG 137

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  267 VPYTDVWQFAPVQYYP------GKHPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLALNRRFIGIEMEEETFD 340
Cdd:pfam01555 138 KPIGDVWDFSRVQPSEkesggnGKHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVE 217


                  ..
gi 515609505  341 LT 342
Cdd:pfam01555 218 IA 219
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
8-343 1.86e-29

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 114.43  E-value: 1.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505   8 DGRATLVNADCLPYLKTLADNSVDLILTDPPYFQVKRNAWD-NQWPDvQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKL 86
Cdd:PRK11524   6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLiEAWKE-DLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  87 ASDTEILIRNRFEVFNHIIWakpsgpwrrmhkpdlrmffpateriifagHYNAEGYakgcsgyttqcsQLKK---QVFKP 163
Cdd:PRK11524  85 MPFIDLYCRKLFTIKSRIVW-----------------------------SYDSSGV------------QAKKyfgSMYEP 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 164 LIdyfmdarkqlgvtakeineatgtqMCSHwfsesqwalpnedqylklqrlfDKKrgelvkshhelvgeyNY-LNSQyQT 242
Cdd:PRK11524 124 IL------------------------MMVK----------------------DAK---------------NYtFNGD-AI 141

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 243 LVREFDGLKAEYEHLRR----PFSvTSDVPyTDVWQFAPVQY----YPgKHPCEKPQALLEHVLLSSSRENDVVLDAFMG 314
Cdd:PRK11524 142 LVEAKTGAKRALIDYRKnppqPYN-TQKVP-GNVWDFPRVRYlmdeYE-NHPTQKPEALLKRIILASSNPGDIVLDPFAG 218

                        330       340
                 ....*....|....*....|....*....
gi 515609505 315 SGSTGKACLALNRRFIGIEMEEETFDLTL 343
Cdd:PRK11524 219 SFTTGAVAKASGRKFIGIEINSEYIKMGL 247
 
Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
12-348 3.92e-56

DNA modification methylase [Replication, recombination and repair];


Pssm-ID: 440623  Cd Length: 236  Bit Score: 182.82  E-value: 3.92e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  12 TLVNADCLPYLKTLADNSVDLILTDPPYFQVKRNAW----DNQWPDVQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKLA 87
Cdd:COG0863    1 RLICGDCLEVLKELPDESVDLIVTDPPYNLGKKYGLgrreIGNELSFEEYLEFLREWLAECYRVLKPGGSLYVNIGDRYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  88 SDT-EILIRNRFEVFNHIIWAKPSGpwrrMHKPDLRMFFPATERIIFaghynaegYAKGcsgyttqcsqlKKQVFKPlid 166
Cdd:COG0863   81 SRLiAALRDAGFKLRNEIIWRKPNG----VPGPSKRRFRNSHEYILW--------FTKG-----------KKYTFNV--- 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 167 yfmDARKqlgvtakeineatgtqmcshwfsesqwalpnedqylklqrlfdkkrgelvkshhelvgeynylnsqyqtlvre 246
Cdd:COG0863  135 ---DAVK------------------------------------------------------------------------- 138

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 247 fdglkaeyehlrrpfSVTSDVPYTDVWQFAPVQY-YPGKHPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLAL 325
Cdd:COG0863  139 ---------------SIEDGRNPSDVWDIPGVTPkERKGHPTQKPVELLERLILASSNPGDIVLDPFAGSGTTLVAAERL 203

                        330       340
                 ....*....|....*....|...
gi 515609505 326 NRRFIGIEMEEETFDLTLNAMRE 348
Cdd:COG0863  204 GRRFIGIEIDPEYVEVARRRLEE 226
N6_N4_Mtase pfam01555
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 ...
 30-342 1.85e-41

DNA methylase; Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.


Pssm-ID: 396230 [Multi-domain]  Cd Length: 221  Bit Score: 144.46  E-value: 1.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505   30 VDLILTDPPYFQVKRNAWDNQWPDVQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKLASDTEILIRNRFEVF---NHIIW 106
Cdd:pfam01555   1 VDLIVTDPPYNLGKDYGQWDDKDSIEEYLEWLEEWLKEVRRVLKPGGSIFINIGDSNIKSLKALALEILGIFkllNDIIW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  107 AKPSGpwrrmhkpdlrMFFPATERiifaghynaegyakgcsgyttqcsqlkkqvFKPLIDYFMdarkqlgvtakeineat 186
Cdd:pfam01555  81 RKPNG-----------MPNSNGER------------------------------FTPAHEYIL----------------- 102

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  187 gtqmcshWFSESQWALPNEDQYLKLQrlFDKKRGELVKShhelvgeynylnsqyqtlvrefdglkaeyehlrrpfSVTSD 266
Cdd:pfam01555 103 -------WFSKTKKYKTFNYDAIKVP--YDEKDKLKKRG------------------------------------SEPNG 137

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  267 VPYTDVWQFAPVQYYP------GKHPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLALNRRFIGIEMEEETFD 340
Cdd:pfam01555 138 KPIGDVWDFSRVQPSEkesggnGKHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVE 217


                  ..
gi 515609505  341 LT 342
Cdd:pfam01555 218 IA 219
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
8-343 1.86e-29

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 114.43  E-value: 1.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505   8 DGRATLVNADCLPYLKTLADNSVDLILTDPPYFQVKRNAWD-NQWPDvQSFLAWLDEVILEFWRVLKPSGSLYLFCGSKL 86
Cdd:PRK11524   6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLiEAWKE-DLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  87 ASDTEILIRNRFEVFNHIIWakpsgpwrrmhkpdlrmffpateriifagHYNAEGYakgcsgyttqcsQLKK---QVFKP 163
Cdd:PRK11524  85 MPFIDLYCRKLFTIKSRIVW-----------------------------SYDSSGV------------QAKKyfgSMYEP 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 164 LIdyfmdarkqlgvtakeineatgtqMCSHwfsesqwalpnedqylklqrlfDKKrgelvkshhelvgeyNY-LNSQyQT 242
Cdd:PRK11524 124 IL------------------------MMVK----------------------DAK---------------NYtFNGD-AI 141

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 243 LVREFDGLKAEYEHLRR----PFSvTSDVPyTDVWQFAPVQY----YPgKHPCEKPQALLEHVLLSSSRENDVVLDAFMG 314
Cdd:PRK11524 142 LVEAKTGAKRALIDYRKnppqPYN-TQKVP-GNVWDFPRVRYlmdeYE-NHPTQKPEALLKRIILASSNPGDIVLDPFAG 218

                        330       340
                 ....*....|....*....|....*....
gi 515609505 315 SGSTGKACLALNRRFIGIEMEEETFDLTL 343
Cdd:PRK11524 219 SFTTGAVAKASGRKFIGIEINSEYIKMGL 247
Mod COG2189
Adenine specific DNA methylase Mod [Replication, recombination and repair];
13-347 4.63e-15

Adenine specific DNA methylase Mod [Replication, recombination and repair];


Pssm-ID: 441792 [Multi-domain]  Cd Length: 491  Bit Score: 75.97  E-value: 4.63e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  13 LVNADCLPYLKTLA---DNSVDLILTDPPYFqVKRNAW--DNQWPDVQSFL---AWLdevilEF--------WRVLKPSG 76
Cdd:COG2189   39 LIEGDNLEALKLLQesyAGKVKCIYIDPPYN-TGNDFFayNDNFETESNGRfhsSWL-----SMmyprlklaRELLSEDG 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505  77 SLYLFCGsklasDTEI----LIRNrfEVF------NHIIWAKPSGPwrrmhKPDLRMFFPATERIIFaghynaegYAKGC 146
Cdd:COG2189  113 VIFVSID-----DNEVhylkLLLD--EIFgeenfvATIIWKKKSSG-----KNDAKFFSRTHEYILV--------YAKNK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 147 SGYTTQCSQLKKQVFK--PLID------YFMDARKQLGVTAKE----INEATGTqmcsHWFSESQWALPNEdqylKLQRL 214
Cdd:COG2189  173 SYLKFNGLPRTEEQLKryKNPDndprgrWRSVPLTAPGGRPNLfypiEHPSTGK----EVYPGRGWRWSKE----TMEEL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505 215 FDKKRGELVKSHHELVGEYNYLNsqyqtlvrefdglkaEYEHLRRPFSVTSDVPYTD------VWQFAPVQY-YPgkhpc 287
Cdd:COG2189  245 IADGRIYFGKDGNGVPRRKRYLD---------------EVKKGVVPTTIWDDIGTNQngtkelKELFGGKVFdTP----- 304

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515609505 288 eKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLALN------RRFIGIEMEEETFDLTLNAMR 347
Cdd:COG2189  305 -KPEKLLKRIIEIATNPGDLVLDFFAGSGTTAHAVMKLNaedggnRRFILVQLGEYADTVTKERLR 369
PRK13699 PRK13699
putative methylase; Provisional
 268-337 3.08e-10

putative methylase; Provisional


Pssm-ID: 184255  Cd Length: 227  Bit Score: 59.46  E-value: 3.08e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515609505 268 PYTDV--WQfapvqyYPGK--HPCEKPQALLEHVLLSSSRENDVVLDAFMGSGSTGKACLALNRRFIGIEMEEE 337
Cdd:PRK13699 129 PLPDVlgWK------YSGNrhHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 8-80 5.74e-04

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 40.90  E-value: 5.74e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515609505   8 DGRATLVNADCLPYLKTLADNSVDLILTDPPYFQVKRnawDNQWPDVQSFLAW------LDEVILEFWRVLKPSGSLYL 80
Cdd:COG4123   87 EDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFKAGS---GRKSPDEARAIARhedaltLEDLIRAAARLLKPGGRFAL 162
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
 6-76 9.31e-04

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 39.55  E-value: 9.31e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515609505   6 LHDGRATLVNAD--CLPylktLADNSVDLILTDPPY-FQVKRNAwdnqwpdvQSFLAWLDEVILEFWRVLKPSG 76
Cdd:COG1041   71 YGYEDADVIRGDarDLP----LADESVDAIVTDPPYgRSSKISG--------EELLELYEKALEEAARVLKPGG 132
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
 297-342 1.76e-03

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 38.78  E-value: 1.76e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 515609505 297 VLLSSSRENDVVLDAFMGSGSTGKACLALNRRFIGIEMEEETFDLT 342
Cdd:COG1041   19 VNLAGAKEGDTVLDPFCGTGTILIEAGLLGRRVIGSDIDPKMVEGA 64
RsmD COG0742
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 8-67 4.76e-03

16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440505 [Multi-domain]  Cd Length: 183  Bit Score: 37.37  E-value: 4.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515609505   8 DGRATLVNADCLPYLKTLADNSVDLILTDPPYFQvkrnawdNQWPDVQSFLA---WLDE---VILE 67
Cdd:COG0742   90 EDRARVIRGDALRFLKRLAGEPFDLVFLDPPYAK-------GLLEKALELLAengLLAPgglIVVE 148
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 10-81 5.89e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 36.90  E-value: 5.89e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515609505  10 RATLVNAD--CLPylktLADNSVDLILTdppyfqvkRNAWDNqWPDVQSFLAwldevilEFWRVLKPSGSLYLF 81
Cdd:COG2226   70 NVEFVVGDaeDLP----FPDGSFDLVIS--------SFVLHH-LPDPERALA-------EIARVLKPGGRLVVV 123
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 3-80 8.67e-03

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 35.33  E-value: 8.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515609505    3 KHTLHDGRATLVNADC--LPylktLADNSVDLILTdppyfqvkRNAWDNqWPDVQSFLAwldevilEFWRVLKPSGSLYL 80
Cdd:pfam08241  35 REKAPREGLTFVVGDAedLP----FPDNSFDLVLS--------SEVLHH-VEDPERALR-------EIARVLKPGGILII 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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