NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|515623599|ref|WP_017056199|]
View 

MULTISPECIES: zinc ribbon domain-containing protein [Vibrio]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10537594)

zinc ribbon domain-containing protein similar to Escherichia coli YfgJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 2.48e-22

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


:

Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 80.78  E-value: 2.48e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515623599   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSSQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 2.48e-22

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 80.78  E-value: 2.48e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515623599   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSSQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
PRK14559 PRK14559
serine/threonine phosphatase;
5-50 3.48e-03

serine/threonine phosphatase;


Pssm-ID: 237756 [Multi-domain]  Cd Length: 645  Bit Score: 33.88  E-value: 3.48e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 515623599   5 ICPKCQSELAWDGKYhCESCQAHFT-KVgfCPECSSQLEKLQA----CGAA 50
Cdd:PRK14559   3 ICPQCQFENPNNNRF-CQKCGTSLThKP--CPQCGTEVPVDEAhcpnCGAE 50
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 6-69 2.48e-22

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 80.78  E-value: 2.48e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515623599   6 CPKCQSELAWDG-KYHCESCQAHFTKVGFCPECSSQLEKLQACGAASYFCNgDCNELKSKSRVKF 69
Cdd:pfam07191  1 CPKCQQELEWRGgHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCN-HCNELISKKRVEF 64
PRK14559 PRK14559
serine/threonine phosphatase;
5-50 3.48e-03

serine/threonine phosphatase;


Pssm-ID: 237756 [Multi-domain]  Cd Length: 645  Bit Score: 33.88  E-value: 3.48e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 515623599   5 ICPKCQSELAWDGKYhCESCQAHFT-KVgfCPECSSQLEKLQA----CGAA 50
Cdd:PRK14559   3 ICPQCQFENPNNNRF-CQKCGTSLThKP--CPQCGTEVPVDEAhcpnCGAE 50
PRK04023 PRK04023
DNA polymerase II large subunit; Validated
 5-71 6.12e-03

DNA polymerase II large subunit; Validated


Pssm-ID: 235202 [Multi-domain]  Cd Length: 1121  Bit Score: 33.34  E-value: 6.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515623599    5 ICPKCQSELAWdgkYHCESCQAHFTKVGFCPECSSQLEklqacgaaSYFCNGDCNELKSKSRVKFEF 71
Cdd:PRK04023  628 KCPSCGKETFY---RRCPFCGTHTEPVYRCPRCGIEVE--------EDECEKCGREPTPYSKRKIDL 683
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH